data_7XJP # _model_server_result.job_id J26_omHAXN-uvmL9MeD-IQ _model_server_result.datetime_utc '2025-03-04 19:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7XJP # _exptl.entry_id 7XJP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XJP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id C1D _struct_conn.ptnr1_label_comp_id APR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id APR _struct_conn.ptnr1_auth_seq_id 702 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O2' _struct_conn.ptnr2_label_comp_id ATP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id ATP _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.418 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 132 n n PG O2G ATP sing 133 n n PG O3G ATP sing 134 n n PG O3B ATP sing 135 n n O2G HOG2 ATP sing 136 n n O3G HOG3 ATP sing 137 n n PB O1B ATP doub 138 n n PB O2B ATP sing 139 n n PB O3B ATP sing 140 n n PB O3A ATP sing 141 n n O2B HOB2 ATP sing 142 n n PA O1A ATP doub 143 n n PA O2A ATP sing 144 n n PA O3A ATP sing 145 n n PA O5' ATP sing 146 n n O2A HOA2 ATP sing 147 n n O5' C5' ATP sing 148 n n C5' C4' ATP sing 149 n n C5' "H5'1" ATP sing 150 n n C5' "H5'2" ATP sing 151 n n C4' O4' ATP sing 152 n n C4' C3' ATP sing 153 n n C4' H4' ATP sing 154 n n O4' C1' ATP sing 155 n n C3' O3' ATP sing 156 n n C3' C2' ATP sing 157 n n C3' H3' ATP sing 158 n n O3' HO3' ATP sing 159 n n C2' O2' ATP sing 160 n n C2' C1' ATP sing 161 n n C2' H2' ATP sing 162 n n O2' HO2' ATP sing 163 n n C1' N9 ATP sing 164 n n C1' H1' ATP sing 165 n n N9 C8 ATP sing 166 n y N9 C4 ATP sing 167 n y C8 N7 ATP doub 168 n y C8 H8 ATP sing 169 n n N7 C5 ATP sing 170 n y C5 C6 ATP sing 171 n y C5 C4 ATP doub 172 n y C6 N6 ATP sing 173 n n C6 N1 ATP doub 174 n y N6 HN61 ATP sing 175 n n N6 HN62 ATP sing 176 n n N1 C2 ATP sing 177 n y C2 N3 ATP doub 178 n y C2 H2 ATP sing 179 n n N3 C4 ATP sing 180 n y # _atom_sites.entry_id 7XJP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IPA A 1 701 702 IPA IPA . D 4 APR A 1 702 601 APR GGG . E 5 ATP B 1 601 601 ATP GGG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 135.67 117.4 124.55 1 70.25 ? PG ATP 601 B 1 HETATM 2 O O1G ATP . . . E 5 134.481 117.993 123.837 1 84 ? O1G ATP 601 B 1 HETATM 3 O O2G ATP . . . E 5 135.317 116.229 125.43 1 45.33 ? O2G ATP 601 B 1 HETATM 4 O O3G ATP . . . E 5 136.589 118.409 125.192 1 71.46 ? O3G ATP 601 B 1 HETATM 5 P PB ATP . . . E 5 138.143 116.686 123.416 1 61.11 ? PB ATP 601 B 1 HETATM 6 O O1B ATP . . . E 5 138.72 117.795 122.575 1 80.02 ? O1B ATP 601 B 1 HETATM 7 O O2B ATP . . . E 5 138.549 116.524 124.854 1 44.05 ? O2B ATP 601 B 1 HETATM 8 O O3B ATP . . . E 5 136.538 116.753 123.358 1 54.48 ? O3B ATP 601 B 1 HETATM 9 P PA ATP . . . E 5 137.85 114.867 121.286 1 38.96 ? PA ATP 601 B 1 HETATM 10 O O1A ATP . . . E 5 136.352 114.745 121.403 1 75.33 ? O1A ATP 601 B 1 HETATM 11 O O2A ATP . . . E 5 138.477 115.72 120.214 1 41.78 ? O2A ATP 601 B 1 HETATM 12 O O3A ATP . . . E 5 138.466 115.287 122.707 1 82.14 ? O3A ATP 601 B 1 HETATM 13 O O5' ATP . . . E 5 138.459 113.391 121.192 1 61.12 ? O5' ATP 601 B 1 HETATM 14 C C5' ATP . . . E 5 138.051 112.43 122.158 1 41.88 ? C5' ATP 601 B 1 HETATM 15 C C4' ATP . . . E 5 138.704 111.109 121.81 1 33.96 ? C4' ATP 601 B 1 HETATM 16 O O4' ATP . . . E 5 138.594 110.177 122.878 1 37.04 ? O4' ATP 601 B 1 HETATM 17 C C3' ATP . . . E 5 138.002 110.465 120.637 1 35.81 ? C3' ATP 601 B 1 HETATM 18 O O3' ATP . . . E 5 138.826 110.578 119.48 1 39.07 ? O3' ATP 601 B 1 HETATM 19 C C2' ATP . . . E 5 137.871 109.008 121.006 1 38.24 ? C2' ATP 601 B 1 HETATM 20 O O2' ATP . . . E 5 138.46 108.257 119.958 1 36.58 ? O2' ATP 601 B 1 HETATM 21 C C1' ATP . . . E 5 138.641 108.875 122.309 1 42.65 ? C1' ATP 601 B 1 HETATM 22 N N9 ATP . . . E 5 137.95 107.892 123.177 1 38.94 ? N9 ATP 601 B 1 HETATM 23 C C8 ATP . . . E 5 136.643 107.901 123.488 1 33.51 ? C8 ATP 601 B 1 HETATM 24 N N7 ATP . . . E 5 136.325 106.852 124.288 1 40.36 ? N7 ATP 601 B 1 HETATM 25 C C5 ATP . . . E 5 137.449 106.146 124.489 1 33.98 ? C5 ATP 601 B 1 HETATM 26 C C6 ATP . . . E 5 137.817 104.924 125.232 1 38.98 ? C6 ATP 601 B 1 HETATM 27 N N6 ATP . . . E 5 136.896 104.231 125.938 1 34.39 ? N6 ATP 601 B 1 HETATM 28 N N1 ATP . . . E 5 139.102 104.522 125.184 1 42.16 ? N1 ATP 601 B 1 HETATM 29 C C2 ATP . . . E 5 140.028 105.2 124.488 1 37.16 ? C2 ATP 601 B 1 HETATM 30 N N3 ATP . . . E 5 139.764 106.315 123.79 1 33.59 ? N3 ATP 601 B 1 HETATM 31 C C4 ATP . . . E 5 138.514 106.828 123.748 1 37.16 ? C4 ATP 601 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 31 #