data_7XK9 # _model_server_result.job_id cmJ70Y1hAa5AqXSbCeczVw _model_server_result.datetime_utc '2025-02-22 21:10:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1401}' # _entry.id 7XK9 # _exptl.entry_id 7XK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.295 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,6R)-6-(propan-2-ylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XK9 _cell.length_a 49.6 _cell.length_b 66.56 _cell.length_c 302.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 255 A CYS 1106 1_555 A SG CYS 340 A CYS 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 333 A CYS 1184 1_555 A SG CYS 339 A CYS 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OD1 ASN 252 A ASN 1103 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc2 A O CYS 333 A CYS 1184 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A O GLU 336 A GLU 1187 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc4 A O CYS 339 A CYS 1190 1_555 D NA NA . A NA 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? # _chem_comp.formula 'C13 H19 N O3' _chem_comp.formula_weight 237.295 _chem_comp.id GJ6 _chem_comp.mon_nstd_flag . _chem_comp.name (5R,6R)-6-(propan-2-ylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C11 GJ6 sing 83 n n C12 C11 GJ6 sing 84 n n C11 N1 GJ6 sing 85 n n C8 C7 GJ6 sing 86 n n C8 C9 GJ6 sing 87 n n N1 C9 GJ6 sing 88 n n C7 C5 GJ6 sing 89 n n C9 C10 GJ6 sing 90 n n O1 C4 GJ6 sing 91 n n C5 C4 GJ6 doub 92 n y C5 C6 GJ6 sing 93 n y C10 C6 GJ6 sing 94 n n C10 O3 GJ6 sing 95 n n C4 C3 GJ6 sing 96 n y C6 C1 GJ6 doub 97 n y C3 O2 GJ6 sing 98 n n C3 C2 GJ6 doub 99 n y C1 C2 GJ6 sing 100 n y C11 H13 GJ6 sing 101 n n C7 H4 GJ6 sing 102 n n C7 H3 GJ6 sing 103 n n C8 H5 GJ6 sing 104 n n C8 H6 GJ6 sing 105 n n C9 H7 GJ6 sing 106 n n C10 H8 GJ6 sing 107 n n C12 H15 GJ6 sing 108 n n C12 H16 GJ6 sing 109 n n C12 H14 GJ6 sing 110 n n C13 H18 GJ6 sing 111 n n C13 H19 GJ6 sing 112 n n C13 H17 GJ6 sing 113 n n N1 H20 GJ6 sing 114 n n C1 H1 GJ6 sing 115 n n C2 H2 GJ6 sing 116 n n O1 H9 GJ6 sing 117 n n O2 H10 GJ6 sing 118 n n O3 H11 GJ6 sing 119 n n # _atom_sites.entry_id 7XK9 _atom_sites.fract_transf_matrix[1][1] 0.020161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GJ6 A 1 1401 1 GJ6 DRG . D 4 NA A 1 1402 1402 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GJ6 . . . C 3 0.771 -12.233 -48.21 1 54.8 ? C4 GJ6 1401 A 1 HETATM 2 C C5 GJ6 . . . C 3 -0.45 -12.658 -48.767 1 55.29 ? C5 GJ6 1401 A 1 HETATM 3 C C6 GJ6 . . . C 3 -1.581 -12.779 -47.948 1 53.23 ? C6 GJ6 1401 A 1 HETATM 4 C C11 GJ6 . . . C 3 -4.849 -11.183 -51.079 1 56.5 ? C11 GJ6 1401 A 1 HETATM 5 C C7 GJ6 . . . C 3 -0.529 -13.03 -50.223 1 47 ? C7 GJ6 1401 A 1 HETATM 6 C C8 GJ6 . . . C 3 -1.875 -12.693 -50.834 1 44.72 ? C8 GJ6 1401 A 1 HETATM 7 C C9 GJ6 . . . C 3 -2.991 -12.37 -49.822 1 51.59 ? C9 GJ6 1401 A 1 HETATM 8 C C10 GJ6 . . . C 3 -2.925 -13.188 -48.526 1 50.71 ? C10 GJ6 1401 A 1 HETATM 9 C C12 GJ6 . . . C 3 -6.247 -11.45 -51.61 1 55.05 ? C12 GJ6 1401 A 1 HETATM 10 C C13 GJ6 . . . C 3 -3.943 -10.667 -52.174 1 49.38 ? C13 GJ6 1401 A 1 HETATM 11 N N1 GJ6 . . . C 3 -4.312 -12.427 -50.487 1 53.51 ? N1 GJ6 1401 A 1 HETATM 12 C C3 GJ6 . . . C 3 0.85 -11.891 -46.865 1 53.88 ? C3 GJ6 1401 A 1 HETATM 13 C C1 GJ6 . . . C 3 -1.485 -12.383 -46.615 1 47.94 ? C1 GJ6 1401 A 1 HETATM 14 C C2 GJ6 . . . C 3 -0.283 -11.964 -46.074 1 51.79 ? C2 GJ6 1401 A 1 HETATM 15 O O1 GJ6 . . . C 3 1.885 -12.16 -49.008 1 45.09 ? O1 GJ6 1401 A 1 HETATM 16 O O2 GJ6 . . . C 3 2.058 -11.489 -46.38 1 52.61 ? O2 GJ6 1401 A 1 HETATM 17 O O3 GJ6 . . . C 3 -4.013 -12.847 -47.668 1 45.95 ? O3 GJ6 1401 A 1 HETATM 18 H H13 GJ6 . . . C 3 -4.883 -10.508 -50.372 1 67.48 ? H13 GJ6 1401 A 1 HETATM 19 H H4 GJ6 . . . C 3 0.18 -12.556 -50.707 1 56.07 ? H4 GJ6 1401 A 1 HETATM 20 H H3 GJ6 . . . C 3 -0.361 -13.992 -50.31 1 56.07 ? H3 GJ6 1401 A 1 HETATM 21 H H5 GJ6 . . . C 3 -2.166 -13.453 -51.382 1 53.33 ? H5 GJ6 1401 A 1 HETATM 22 H H6 GJ6 . . . C 3 -1.762 -11.918 -51.425 1 53.33 ? H6 GJ6 1401 A 1 HETATM 23 H H7 GJ6 . . . C 3 -2.809 -11.457 -49.505 1 61.59 ? H7 GJ6 1401 A 1 HETATM 24 H H8 GJ6 . . . C 3 -3.019 -14.164 -48.649 1 60.53 ? H8 GJ6 1401 A 1 HETATM 25 H H15 GJ6 . . . C 3 -6.204 -12.132 -52.303 1 65.74 ? H15 GJ6 1401 A 1 HETATM 26 H H16 GJ6 . . . C 3 -6.613 -10.63 -51.984 1 65.74 ? H16 GJ6 1401 A 1 HETATM 27 H H14 GJ6 . . . C 3 -6.815 -11.759 -50.884 1 65.74 ? H14 GJ6 1401 A 1 HETATM 28 H H18 GJ6 . . . C 3 -3.797 -11.37 -52.831 1 58.93 ? H18 GJ6 1401 A 1 HETATM 29 H H19 GJ6 . . . C 3 -3.091 -10.399 -51.789 1 58.93 ? H19 GJ6 1401 A 1 HETATM 30 H H17 GJ6 . . . C 3 -4.361 -9.901 -52.605 1 58.93 ? H17 GJ6 1401 A 1 HETATM 31 H H20 GJ6 . . . C 3 -4.888 -12.699 -49.886 1 63.88 ? H20 GJ6 1401 A 1 HETATM 32 H H1 GJ6 . . . C 3 -2.253 -12.4 -46.066 1 57.21 ? H1 GJ6 1401 A 1 HETATM 33 H H2 GJ6 . . . C 3 -0.234 -11.729 -45.172 1 61.82 ? H2 GJ6 1401 A 1 HETATM 34 H H9 GJ6 . . . C 3 2.034 -12.926 -49.349 1 53.78 ? H9 GJ6 1401 A 1 HETATM 35 H H10 GJ6 . . . C 3 2.415 -10.914 -46.905 1 62.81 ? H10 GJ6 1401 A 1 HETATM 36 H H11 GJ6 . . . C 3 -3.967 -12.022 -47.477 1 54.82 ? H11 GJ6 1401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 36 #