data_7XKJ # _model_server_result.job_id odnTtkhsTkiOvorekQsoPA _model_server_result.datetime_utc '2025-07-06 19:17:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7XKJ # _exptl.entry_id 7XKJ _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 600.633 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XKJ _cell.length_a 38.88 _cell.length_b 49.28 _cell.length_c 87.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE1 GLU 168 A GLU 168 1_555 B N3 GDP . A GDP 201 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.182 ? metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 B O3B GDP . A GDP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? # _chem_comp.formula 'C33 H31 F3 N6 O2' _chem_comp.formula_weight 600.633 _chem_comp.id 6IC _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MRTX-1133 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O02 C17 6IC sing 1 n n C17 C16 6IC doub 2 n y C17 C18 6IC sing 3 n y C16 C08 6IC sing 4 n y C18 C19 6IC doub 5 n y N03 C05 6IC doub 6 n y N03 C06 6IC sing 7 n y C08 C06 6IC sing 8 n n C08 C20 6IC doub 9 n y C05 C01 6IC sing 10 n y C06 C07 6IC doub 11 n y C19 C20 6IC sing 12 n y C19 C21 6IC sing 13 n y C20 C24 6IC sing 14 n y C01 C02 6IC doub 15 n y C01 C04 6IC sing 16 n y C07 C02 6IC sing 17 n y C07 F01 6IC sing 18 n n C13 N04 6IC sing 19 n n C13 C12 6IC sing 20 n n C29 N06 6IC sing 21 n n C29 C30 6IC sing 22 n n N04 C04 6IC sing 23 n n N04 C10 6IC sing 24 n n C02 N01 6IC sing 25 n y C04 N02 6IC doub 26 n y C21 C22 6IC doub 27 n y N06 C28 6IC sing 28 n n N06 C25 6IC sing 29 n n C10 C11 6IC sing 30 n n C30 C31 6IC sing 31 n n N02 C03 6IC sing 32 n y C28 C27 6IC sing 33 n n N01 C03 6IC doub 34 n y C03 O01 6IC sing 35 n n C12 N05 6IC sing 36 n n C12 C14 6IC sing 37 n n N05 C11 6IC sing 38 n n C24 C32 6IC sing 39 n n C24 C23 6IC doub 40 n y O01 C09 6IC sing 41 n n C09 C25 6IC sing 42 n n C11 C15 6IC sing 43 n n C22 C23 6IC sing 44 n y C25 C31 6IC sing 45 n n C25 C26 6IC sing 46 n n C32 C33 6IC trip 47 n n C23 F23 6IC sing 48 n n C27 F02 6IC sing 49 n n C27 C26 6IC sing 50 n n C14 C15 6IC sing 51 n n C22 H1 6IC sing 52 n n C21 H2 6IC sing 53 n n C14 H3 6IC sing 54 n n C14 H4 6IC sing 55 n n C13 H5 6IC sing 56 n n C13 H6 6IC sing 57 n n C18 H7 6IC sing 58 n n C05 H8 6IC sing 59 n n C09 H9 6IC sing 60 n n C09 H10 6IC sing 61 n n C10 H11 6IC sing 62 n n C10 H12 6IC sing 63 n n C11 H13 6IC sing 64 n n C12 H14 6IC sing 65 n n C15 H15 6IC sing 66 n n C15 H16 6IC sing 67 n n C16 H17 6IC sing 68 n n C26 H18 6IC sing 69 n n C26 H19 6IC sing 70 n n C27 H20 6IC sing 71 n n C28 H21 6IC sing 72 n n C28 H22 6IC sing 73 n n C29 H23 6IC sing 74 n n C29 H24 6IC sing 75 n n C30 H25 6IC sing 76 n n C30 H26 6IC sing 77 n n C31 H27 6IC sing 78 n n C31 H28 6IC sing 79 n n C33 H29 6IC sing 80 n n N05 H30 6IC sing 81 n n O02 H33 6IC sing 82 n n # _atom_sites.entry_id 7XKJ _atom_sites.fract_transf_matrix[1][1] 0.02572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 6IC A 1 202 202 6IC 6IC . D 4 MG A 1 203 203 MG MG . E 5 HOH A 1 301 15 HOH HOH . E 5 HOH A 2 302 13 HOH HOH . E 5 HOH A 3 303 10 HOH HOH . E 5 HOH A 4 304 11 HOH HOH . E 5 HOH A 5 305 16 HOH HOH . E 5 HOH A 6 306 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 6IC . . . C 3 -5.11 3.342 -21.819 1 26.74 ? C22 6IC 202 A 1 HETATM 2 C C21 6IC . . . C 3 -5.232 3.448 -23.212 1 20.97 ? C21 6IC 202 A 1 HETATM 3 C C23 6IC . . . C 3 -3.827 3.288 -21.259 1 26.58 ? C23 6IC 202 A 1 HETATM 4 C C20 6IC . . . C 3 -2.824 3.469 -23.566 1 16.12 ? C20 6IC 202 A 1 HETATM 5 C C24 6IC . . . C 3 -2.73 3.353 -22.144 1 19.53 ? C24 6IC 202 A 1 HETATM 6 C C19 6IC . . . C 3 -4.097 3.506 -24.059 1 23.09 ? C19 6IC 202 A 1 HETATM 7 C C17 6IC . . . C 3 -3.182 3.651 -26.295 1 28.16 ? C17 6IC 202 A 1 HETATM 8 C C14 6IC . . . C 3 6.475 2.551 -21.027 1 21.01 ? C14 6IC 202 A 1 HETATM 9 C C13 6IC . . . C 3 6.078 2.565 -23.607 1 29.96 ? C13 6IC 202 A 1 HETATM 10 C C18 6IC . . . C 3 -4.293 3.599 -25.451 1 27.6 ? C18 6IC 202 A 1 HETATM 11 C C01 6IC . . . C 3 2.519 3.385 -23.684 1 29.27 ? C01 6IC 202 A 1 HETATM 12 C C02 6IC . . . C 3 1.813 4.485 -23.351 1 22.38 ? C02 6IC 202 A 1 HETATM 13 C C03 6IC . . . C 3 3.832 5.424 -22.511 1 17.53 ? C03 6IC 202 A 1 HETATM 14 C C04 6IC . . . C 3 3.901 3.336 -23.411 1 28.57 ? C04 6IC 202 A 1 HETATM 15 C C05 6IC . . . C 3 1.832 2.31 -24.312 1 24.91 ? C05 6IC 202 A 1 HETATM 16 C C06 6IC . . . C 3 -0.19 3.47 -24.239 1 21.12 ? C06 6IC 202 A 1 HETATM 17 C C07 6IC . . . C 3 0.449 4.509 -23.641 1 19.73 ? C07 6IC 202 A 1 HETATM 18 C C08 6IC . . . C 3 -1.718 3.535 -24.464 1 17.93 ? C08 6IC 202 A 1 HETATM 19 C C09 6IC . . . C 3 4.861 7.05 -21.188 1 21.51 ? C09 6IC 202 A 1 HETATM 20 C C10 6IC . . . C 3 4.184 0.923 -22.656 1 18.27 ? C10 6IC 202 A 1 HETATM 21 C C11 6IC . . . C 3 5.307 0.652 -21.682 1 20.83 ? C11 6IC 202 A 1 HETATM 22 C C12 6IC . . . C 3 6.858 1.927 -22.446 1 26.46 ? C12 6IC 202 A 1 HETATM 23 C C15 6IC . . . C 3 5.325 1.819 -20.668 1 19.54 ? C15 6IC 202 A 1 HETATM 24 C C16 6IC . . . C 3 -1.886 3.605 -25.824 1 21.79 ? C16 6IC 202 A 1 HETATM 25 C C25 6IC . . . C 3 5.494 8.499 -21.445 1 34.57 ? C25 6IC 202 A 1 HETATM 26 C C26 6IC . . . C 3 4.61 9.514 -20.58 1 32.05 ? C26 6IC 202 A 1 HETATM 27 C C27 6IC . . . C 3 4.132 10.463 -21.389 1 28.33 ? C27 6IC 202 A 1 HETATM 28 C C28 6IC . . . C 3 4.525 10.058 -23.017 1 20.85 ? C28 6IC 202 A 1 HETATM 29 C C29 6IC . . . C 3 6.822 9.744 -23.23 1 21.98 ? C29 6IC 202 A 1 HETATM 30 C C30 6IC . . . C 3 7.665 9.048 -22.425 1 18.83 ? C30 6IC 202 A 1 HETATM 31 C C31 6IC . . . C 3 6.781 8.518 -21.106 1 21.91 ? C31 6IC 202 A 1 HETATM 32 C C32 6IC . . . C 3 -1.37 3.284 -21.462 1 18.06 ? C32 6IC 202 A 1 HETATM 33 C C33 6IC . . . C 3 -0.29 3.229 -20.989 1 22.18 ? C33 6IC 202 A 1 HETATM 34 F F01 6IC . . . C 3 -0.517 5.437 -23.447 1 21.32 ? F01 6IC 202 A 1 HETATM 35 F F02 6IC . . . C 3 4.736 11.611 -20.973 1 24.78 ? F02 6IC 202 A 1 HETATM 36 F F23 6IC . . . C 3 -3.744 3.195 -19.901 1 17.41 ? F23 6IC 202 A 1 HETATM 37 N N01 6IC . . . C 3 2.483 5.52 -22.764 1 20.6 ? N01 6IC 202 A 1 HETATM 38 N N02 6IC . . . C 3 4.505 4.339 -22.852 1 23.23 ? N02 6IC 202 A 1 HETATM 39 N N03 6IC . . . C 3 0.508 2.373 -24.565 1 22.8 ? N03 6IC 202 A 1 HETATM 40 N N04 6IC . . . C 3 4.518 2.068 -23.82 1 28.21 ? N04 6IC 202 A 1 HETATM 41 N N05 6IC . . . C 3 6.514 0.702 -22.264 1 28.55 ? N05 6IC 202 A 1 HETATM 42 N N06 6IC . . . C 3 5.454 9.094 -22.99 1 19.33 ? N06 6IC 202 A 1 HETATM 43 O O01 6IC . . . C 3 3.713 6.719 -21.978 1 23.35 ? O01 6IC 202 A 1 HETATM 44 O O02 6IC . . . C 3 -3.392 3.761 -27.671 1 37.47 ? O02 6IC 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #