data_7XL9 # _model_server_result.job_id Rz31j-IkRPFFpS-ifMZdXg _model_server_result.datetime_utc '2024-11-15 09:01:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7XL9 # _exptl.entry_id 7XL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.11 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'URIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XL9 _cell.length_a 44.73 _cell.length_b 44.73 _cell.length_c 283.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N4 O3' _chem_comp.formula_weight 168.11 _chem_comp.id URC _chem_comp.mon_nstd_flag . _chem_comp.name 'URIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,9-DIHYDRO-1H-PURINE-2,6,8(3H)-TRIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URC sing 322 n y N1 C6 URC sing 323 n y N1 HN1 URC sing 324 n n C2 N3 URC sing 325 n y C2 O11 URC doub 326 n n C6 C5 URC sing 327 n y C6 O13 URC doub 328 n n N3 C4 URC sing 329 n y N3 HN3 URC sing 330 n n C4 C5 URC doub 331 n y C4 N9 URC sing 332 n y C5 N7 URC sing 333 n y N9 C8 URC sing 334 n y N9 HN9 URC sing 335 n n N7 C8 URC sing 336 n y N7 HN7 URC sing 337 n n C8 O24 URC doub 338 n n # _atom_sites.entry_id 7XL9 _atom_sites.fract_transf_matrix[1][1] 0.022356 _atom_sites.fract_transf_matrix[1][2] 0.012907 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 3 URC A 1 202 100 URC URC . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 78 HOH HOH . D 4 HOH A 3 303 16 HOH HOH . D 4 HOH A 4 304 38 HOH HOH . D 4 HOH A 5 305 28 HOH HOH . D 4 HOH A 6 306 47 HOH HOH . D 4 HOH A 7 307 15 HOH HOH . D 4 HOH A 8 308 42 HOH HOH . D 4 HOH A 9 309 3 HOH HOH . D 4 HOH A 10 310 73 HOH HOH . D 4 HOH A 11 311 14 HOH HOH . D 4 HOH A 12 312 36 HOH HOH . D 4 HOH A 13 313 18 HOH HOH . D 4 HOH A 14 314 35 HOH HOH . D 4 HOH A 15 315 13 HOH HOH . D 4 HOH A 16 316 9 HOH HOH . D 4 HOH A 17 317 4 HOH HOH . D 4 HOH A 18 318 24 HOH HOH . D 4 HOH A 19 319 44 HOH HOH . D 4 HOH A 20 320 80 HOH HOH . D 4 HOH A 21 321 25 HOH HOH . D 4 HOH A 22 322 6 HOH HOH . D 4 HOH A 23 323 12 HOH HOH . D 4 HOH A 24 324 77 HOH HOH . D 4 HOH A 25 325 50 HOH HOH . D 4 HOH A 26 326 82 HOH HOH . D 4 HOH A 27 327 26 HOH HOH . D 4 HOH A 28 328 69 HOH HOH . D 4 HOH A 29 329 66 HOH HOH . D 4 HOH A 30 330 46 HOH HOH . D 4 HOH A 31 331 81 HOH HOH . D 4 HOH A 32 332 34 HOH HOH . D 4 HOH A 33 333 75 HOH HOH . D 4 HOH A 34 334 71 HOH HOH . D 4 HOH A 35 335 21 HOH HOH . D 4 HOH A 36 336 74 HOH HOH . D 4 HOH A 37 337 31 HOH HOH . D 4 HOH A 38 338 23 HOH HOH . D 4 HOH A 39 339 49 HOH HOH . D 4 HOH A 40 340 17 HOH HOH . D 4 HOH A 41 341 67 HOH HOH . D 4 HOH A 42 342 5 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 19 HOH HOH . D 4 HOH A 45 345 76 HOH HOH . D 4 HOH A 46 346 41 HOH HOH . D 4 HOH A 47 347 7 HOH HOH . D 4 HOH A 48 348 2 HOH HOH . D 4 HOH A 49 349 8 HOH HOH . D 4 HOH A 50 350 79 HOH HOH . D 4 HOH A 51 351 27 HOH HOH . D 4 HOH A 52 352 29 HOH HOH . D 4 HOH A 53 353 70 HOH HOH . D 4 HOH A 54 354 65 HOH HOH . D 4 HOH A 55 355 62 HOH HOH . D 4 HOH A 56 356 72 HOH HOH . D 4 HOH A 57 357 40 HOH HOH . D 4 HOH A 58 358 58 HOH HOH . D 4 HOH A 59 359 48 HOH HOH . D 4 HOH A 60 360 39 HOH HOH . D 4 HOH A 61 361 59 HOH HOH . D 4 HOH A 62 362 51 HOH HOH . D 4 HOH A 63 363 54 HOH HOH . D 4 HOH A 64 364 30 HOH HOH . D 4 HOH A 65 365 55 HOH HOH . D 4 HOH A 66 366 56 HOH HOH . D 4 HOH A 67 367 60 HOH HOH . D 4 HOH A 68 368 61 HOH HOH . D 4 HOH A 69 369 52 HOH HOH . D 4 HOH A 70 370 53 HOH HOH . D 4 HOH A 71 371 57 HOH HOH . D 4 HOH A 72 372 64 HOH HOH . D 4 HOH A 73 373 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URC . . . C 3 15.67 -7.766 5.481 1 147.16 ? N1 URC 202 A 1 HETATM 2 C C2 URC . . . C 3 16.663 -6.937 5.082 1 146.85 ? C2 URC 202 A 1 HETATM 3 C C6 URC . . . C 3 15.904 -8.845 6.255 1 135.65 ? C6 URC 202 A 1 HETATM 4 N N3 URC . . . C 3 17.961 -7.136 5.432 1 143.95 ? N3 URC 202 A 1 HETATM 5 O O11 URC . . . C 3 16.366 -5.966 4.349 1 144.11 ? O11 URC 202 A 1 HETATM 6 C C4 URC . . . C 3 18.34 -8.178 6.207 1 134.05 ? C4 URC 202 A 1 HETATM 7 C C5 URC . . . C 3 17.299 -9.122 6.665 1 132.31 ? C5 URC 202 A 1 HETATM 8 N N9 URC . . . C 3 19.498 -8.643 6.711 1 124.55 ? N9 URC 202 A 1 HETATM 9 O O13 URC . . . C 3 14.981 -9.605 6.618 1 121.26 ? O13 URC 202 A 1 HETATM 10 N N7 URC . . . C 3 17.898 -10.06 7.394 1 130.34 ? N7 URC 202 A 1 HETATM 11 C C8 URC . . . C 3 19.188 -9.738 7.381 1 121.98 ? C8 URC 202 A 1 HETATM 12 O O24 URC . . . C 3 20.074 -10.424 7.994 1 116.16 ? O24 URC 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #