data_7XLQ # _model_server_result.job_id 74DHRGp50_xcuxOW8Io1pg _model_server_result.datetime_utc '2024-11-04 22:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xlq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2407}' # _entry.id 7XLQ # _exptl.entry_id 7XLQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 226.441 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XLQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 K N N ? 7 M N N ? 7 Q N N ? 7 R N N ? 7 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 5 3 2 BMA NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG C 1 NAG 4 n D NAG 2 C 2 NAG C 2 NAG 4 n D BMA 3 C 3 BMA C 3 BMA 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG 4 n E BMA 3 E 3 BMA E 3 BMA 5 n F NAG 1 F 1 NAG F 1 NAG 5 n F NAG 2 F 2 NAG F 2 NAG 5 n F BMA 3 F 3 BMA F 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 251 A CYS 251 1_555 A SG CYS 273 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 268 A CYS 268 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 1318 A CYS 1318 1_555 A SG CYS 1329 A CYS 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 1678 A CYS 1678 1_555 A SG CYS 1694 A CYS 1694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 277 D CYS 303 1_555 B SG CYS 1018 D CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 328 D CYS 354 1_555 B SG CYS 1033 D CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 B SG CYS 378 D CYS 404 1_555 B SG CYS 1045 D CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 641 D CYS 667 1_555 B SG CYS 671 D CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 878 D CYS 904 1_555 B SG CYS 948 D CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 970 D CYS 996 1_555 B SG CYS 1000 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 973 D CYS 999 1_555 B SG CYS 998 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B ND2 ASN 66 D ASN 92 1_555 BA C1 NAG . D NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 158 D ASN 184 1_555 Z C1 NAG . D NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 B ND2 ASN 298 D ASN 324 1_555 CA C1 NAG . D NAG 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 322 D ASN 348 1_555 DA C1 NAG . D NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 B ND2 ASN 442 D ASN 468 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 578 D ASN 604 1_555 V C1 NAG . D NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 B ND2 ASN 587 D ASN 613 1_555 W C1 NAG . D NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 B ND2 ASN 649 D ASN 675 1_555 X C1 NAG . D NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 B ND2 ASN 798 D ASN 824 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 B ND2 ASN 862 D ASN 888 1_555 Y C1 NAG . D NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 B ND2 ASN 869 D ASN 895 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 F O3 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OD2 ASP 116 A ASP 116 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A OE1 GLU 309 A GLU 309 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc3 A OE2 GLU 309 A GLU 309 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc4 A OE1 GLU 1372 A GLU 1372 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 A O GLY 1662 A GLY 1662 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc6 B OG SER 235 D SER 261 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 B OG SER 237 D SER 263 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc8 B OG1 THR 305 D THR 331 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7XLQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 Y01 A 1 2401 2402 Y01 Y01 . H 7 R16 A 1 2402 2403 R16 R16 . I 7 R16 A 1 2403 2404 R16 R16 . J 6 Y01 A 1 2404 2405 Y01 Y01 . K 7 R16 A 1 2405 2406 R16 R16 . L 6 Y01 A 1 2406 2407 Y01 Y01 . M 7 R16 A 1 2407 2408 R16 R16 . N 6 Y01 A 1 2408 2409 Y01 Y01 . O 8 3PE A 1 2409 2410 3PE 3PE . P 6 Y01 A 1 2410 2414 Y01 Y01 . Q 7 R16 A 1 2411 2416 R16 R16 . R 7 R16 A 1 2412 2417 R16 R16 . S 9 CA A 1 2413 2418 CA CA . T 7 R16 A 1 2414 2419 R16 R16 . U 6 Y01 A 1 2415 2420 Y01 Y01 . V 10 NAG D 1 1201 1205 NAG NAG . W 10 NAG D 1 1202 1206 NAG NAG . X 10 NAG D 1 1203 1207 NAG NAG . Y 10 NAG D 1 1204 1208 NAG NAG . Z 10 NAG D 1 1205 1209 NAG NAG . AA 9 CA D 1 1206 1201 CA CA . BA 10 NAG D 1 1207 1202 NAG NAG . CA 10 NAG D 1 1208 1203 NAG NAG . DA 10 NAG D 1 1209 1204 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 R16 . . . M 7 186.326 165.715 153.809 1 13.76 ? C27 R16 2407 A 1 HETATM 2 C C28 R16 . . . M 7 185.548 167.002 153.92 1 13.76 ? C28 R16 2407 A 1 HETATM 3 C C29 R16 . . . M 7 184.209 166.848 154.588 1 13.76 ? C29 R16 2407 A 1 HETATM 4 C C30 R16 . . . M 7 183.316 165.835 153.921 1 13.76 ? C30 R16 2407 A 1 HETATM 5 C C31 R16 . . . M 7 181.885 165.867 154.388 1 13.76 ? C31 R16 2407 A 1 HETATM 6 C C32 R16 . . . M 7 181.002 164.853 153.713 1 13.76 ? C32 R16 2407 A 1 HETATM 7 C C33 R16 . . . M 7 179.525 165.074 153.916 1 13.76 ? C33 R16 2407 A 1 HETATM 8 C C34 R16 . . . M 7 179.034 166.421 153.448 1 13.76 ? C34 R16 2407 A 1 HETATM 9 C C35 R16 . . . M 7 177.552 166.485 153.176 1 13.76 ? C35 R16 2407 A 1 HETATM 10 C C36 R16 . . . M 7 176.685 166.055 154.328 1 13.76 ? C36 R16 2407 A 1 HETATM 11 C C37 R16 . . . M 7 175.209 166.074 154.027 1 13.76 ? C37 R16 2407 A 1 HETATM 12 C C38 R16 . . . M 7 174.656 167.44 153.718 1 13.76 ? C38 R16 2407 A 1 HETATM 13 C C39 R16 . . . M 7 173.177 167.462 153.429 1 13.76 ? C39 R16 2407 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #