data_7XLQ # _model_server_result.job_id 2bfg6jKP_cTt1CEru4H-tg _model_server_result.datetime_utc '2024-11-04 22:59:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xlq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":2410}' # _entry.id 7XLQ # _exptl.entry_id 7XLQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XLQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 J N N ? 6 L N N ? 6 N N N ? 6 P N N ? 6 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 5 3 2 BMA NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG C 1 NAG 4 n D NAG 2 C 2 NAG C 2 NAG 4 n D BMA 3 C 3 BMA C 3 BMA 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG 4 n E BMA 3 E 3 BMA E 3 BMA 5 n F NAG 1 F 1 NAG F 1 NAG 5 n F NAG 2 F 2 NAG F 2 NAG 5 n F BMA 3 F 3 BMA F 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 251 A CYS 251 1_555 A SG CYS 273 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 268 A CYS 268 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 1318 A CYS 1318 1_555 A SG CYS 1329 A CYS 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 1678 A CYS 1678 1_555 A SG CYS 1694 A CYS 1694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 277 D CYS 303 1_555 B SG CYS 1018 D CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 328 D CYS 354 1_555 B SG CYS 1033 D CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 B SG CYS 378 D CYS 404 1_555 B SG CYS 1045 D CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 B SG CYS 641 D CYS 667 1_555 B SG CYS 671 D CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 878 D CYS 904 1_555 B SG CYS 948 D CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 970 D CYS 996 1_555 B SG CYS 1000 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 973 D CYS 999 1_555 B SG CYS 998 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B ND2 ASN 66 D ASN 92 1_555 BA C1 NAG . D NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 158 D ASN 184 1_555 Z C1 NAG . D NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 B ND2 ASN 298 D ASN 324 1_555 CA C1 NAG . D NAG 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 322 D ASN 348 1_555 DA C1 NAG . D NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 B ND2 ASN 442 D ASN 468 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 578 D ASN 604 1_555 V C1 NAG . D NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 B ND2 ASN 587 D ASN 613 1_555 W C1 NAG . D NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 B ND2 ASN 649 D ASN 675 1_555 X C1 NAG . D NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 B ND2 ASN 798 D ASN 824 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 B ND2 ASN 862 D ASN 888 1_555 Y C1 NAG . D NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 B ND2 ASN 869 D ASN 895 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 F O3 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OD2 ASP 116 A ASP 116 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 A OE1 GLU 309 A GLU 309 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc3 A OE2 GLU 309 A GLU 309 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc4 A OE1 GLU 1372 A GLU 1372 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 A O GLY 1662 A GLY 1662 1_555 S CA CA . A CA 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc6 B OG SER 235 D SER 261 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc7 B OG SER 237 D SER 263 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc8 B OG1 THR 305 D THR 331 1_555 AA CA CA . D CA 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7XLQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 Y01 A 1 2401 2402 Y01 Y01 . H 7 R16 A 1 2402 2403 R16 R16 . I 7 R16 A 1 2403 2404 R16 R16 . J 6 Y01 A 1 2404 2405 Y01 Y01 . K 7 R16 A 1 2405 2406 R16 R16 . L 6 Y01 A 1 2406 2407 Y01 Y01 . M 7 R16 A 1 2407 2408 R16 R16 . N 6 Y01 A 1 2408 2409 Y01 Y01 . O 8 3PE A 1 2409 2410 3PE 3PE . P 6 Y01 A 1 2410 2414 Y01 Y01 . Q 7 R16 A 1 2411 2416 R16 R16 . R 7 R16 A 1 2412 2417 R16 R16 . S 9 CA A 1 2413 2418 CA CA . T 7 R16 A 1 2414 2419 R16 R16 . U 6 Y01 A 1 2415 2420 Y01 Y01 . V 10 NAG D 1 1201 1205 NAG NAG . W 10 NAG D 1 1202 1206 NAG NAG . X 10 NAG D 1 1203 1207 NAG NAG . Y 10 NAG D 1 1204 1208 NAG NAG . Z 10 NAG D 1 1205 1209 NAG NAG . AA 9 CA D 1 1206 1201 CA CA . BA 10 NAG D 1 1207 1202 NAG NAG . CA 10 NAG D 1 1208 1203 NAG NAG . DA 10 NAG D 1 1209 1204 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . P 6 173.557 128.417 163.213 1 58.91 ? CAA Y01 2410 A 1 HETATM 2 C CBA Y01 . . . P 6 174.762 129.345 163.236 1 58.91 ? CBA Y01 2410 A 1 HETATM 3 C CAB Y01 . . . P 6 174.91 129.991 164.605 1 58.91 ? CAB Y01 2410 A 1 HETATM 4 C CAN Y01 . . . P 6 174.684 130.399 162.124 1 58.91 ? CAN Y01 2410 A 1 HETATM 5 C CAJ Y01 . . . P 6 174.727 129.89 160.693 1 58.91 ? CAJ Y01 2410 A 1 HETATM 6 C CAO Y01 . . . P 6 176.129 129.66 160.164 1 58.91 ? CAO Y01 2410 A 1 HETATM 7 C CBB Y01 . . . P 6 176.844 128.409 160.699 1 58.91 ? CBB Y01 2410 A 1 HETATM 8 C CAC Y01 . . . P 6 176.188 127.143 160.154 1 58.91 ? CAC Y01 2410 A 1 HETATM 9 C CBE Y01 . . . P 6 178.367 128.451 160.461 1 58.91 ? CBE Y01 2410 A 1 HETATM 10 C CAP Y01 . . . P 6 178.805 128.906 159.043 1 58.91 ? CAP Y01 2410 A 1 HETATM 11 C CAQ Y01 . . . P 6 180.306 129.254 159.176 1 58.91 ? CAQ Y01 2410 A 1 HETATM 12 C CBG Y01 . . . P 6 180.635 128.884 160.623 1 58.91 ? CBG Y01 2410 A 1 HETATM 13 C CBI Y01 . . . P 6 179.341 129.247 161.378 1 58.91 ? CBI Y01 2410 A 1 HETATM 14 C CAE Y01 . . . P 6 179.06 130.757 161.331 1 58.91 ? CAE Y01 2410 A 1 HETATM 15 C CAU Y01 . . . P 6 179.47 128.76 162.824 1 58.91 ? CAU Y01 2410 A 1 HETATM 16 C CAS Y01 . . . P 6 180.737 129.309 163.484 1 58.91 ? CAS Y01 2410 A 1 HETATM 17 C CBF Y01 . . . P 6 181.998 128.897 162.714 1 58.91 ? CBF Y01 2410 A 1 HETATM 18 C CBD Y01 . . . P 6 181.943 129.36 161.247 1 58.91 ? CBD Y01 2410 A 1 HETATM 19 C CAK Y01 . . . P 6 183.127 128.788 160.471 1 58.91 ? CAK Y01 2410 A 1 HETATM 20 C CAI Y01 . . . P 6 184.382 128.651 161.275 1 58.91 ? CAI Y01 2410 A 1 HETATM 21 C CAZ Y01 . . . P 6 184.497 128.866 162.577 1 58.91 ? CAZ Y01 2410 A 1 HETATM 22 C CAV Y01 . . . P 6 185.828 128.667 163.272 1 58.91 ? CAV Y01 2410 A 1 HETATM 23 C CBH Y01 . . . P 6 183.313 129.293 163.44 1 58.91 ? CBH Y01 2410 A 1 HETATM 24 C CAD Y01 . . . P 6 183.413 130.811 163.678 1 58.91 ? CAD Y01 2410 A 1 HETATM 25 C CAT Y01 . . . P 6 183.344 128.549 164.796 1 58.91 ? CAT Y01 2410 A 1 HETATM 26 C CAR Y01 . . . P 6 184.725 128.447 165.441 1 58.91 ? CAR Y01 2410 A 1 HETATM 27 C CBC Y01 . . . P 6 185.679 127.787 164.488 1 58.91 ? CBC Y01 2410 A 1 HETATM 28 O OAW Y01 . . . P 6 186.972 127.582 165.14 1 58.91 ? OAW Y01 2410 A 1 HETATM 29 C CAY Y01 . . . P 6 187.584 128.612 165.718 1 58.91 ? CAY Y01 2410 A 1 HETATM 30 O OAG Y01 . . . P 6 187.868 129.626 165.154 1 58.91 ? OAG Y01 2410 A 1 HETATM 31 C CAM Y01 . . . P 6 187.843 128.368 167.178 1 58.91 ? CAM Y01 2410 A 1 HETATM 32 C CAL Y01 . . . P 6 189.282 128.5 167.63 1 58.91 ? CAL Y01 2410 A 1 HETATM 33 C CAX Y01 . . . P 6 189.464 128.581 169.135 1 58.91 ? CAX Y01 2410 A 1 HETATM 34 O OAH Y01 . . . P 6 190.069 129.568 169.602 1 58.91 ? OAH Y01 2410 A 1 HETATM 35 O OAF Y01 . . . P 6 188.991 127.665 169.837 1 58.91 ? OAF Y01 2410 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #