data_7XM9 # _model_server_result.job_id BBMkkurJ5pTjMx4yON--YA _model_server_result.datetime_utc '2024-10-19 20:16:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2302}' # _entry.id 7XM9 # _exptl.entry_id 7XM9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.396 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(7~{R})-1'-pentylspiro[6~{H}-furo[3,2-f][1,3]benzodioxole-7,3'-indole]-2'-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XM9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 315 A CYS 315 1_555 A SG CYS 330 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? disulf ? disulf2 A SG CYS 884 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? disulf ? disulf3 A SG CYS 886 A CYS 897 1_555 A SG CYS 892 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 924 A CYS 935 1_555 A SG CYS 933 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 1339 A CYS 1350 1_555 A SG CYS 1359 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 1704 A CYS 1715 1_555 A SG CYS 1719 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? disulf ? disulf10 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 1341 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 1355 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 1364 A ASN 1375 1_555 F C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 93 B ASN 93 1_555 I C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 110 B ASN 110 1_555 J C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 114 B ASN 114 1_555 K C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 B ND2 ASN 135 B ASN 135 1_555 L C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C21 H21 N O4' _chem_comp.formula_weight 351.396 _chem_comp.id G2E _chem_comp.mon_nstd_flag . _chem_comp.name "(7~{R})-1'-pentylspiro[6~{H}-furo[3,2-f][1,3]benzodioxole-7,3'-indole]-2'-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7XM9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2301 2005 NAG NAG . G 6 G2E A 1 2302 2101 G2E LIG . H 7 6OU A 1 2303 2201 6OU 6OU . I 5 NAG B 1 501 301 NAG NAG . J 5 NAG B 1 502 302 NAG NAG . K 5 NAG B 1 503 303 NAG NAG . L 5 NAG B 1 504 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 G2E . . . G 6 136.037 129.328 133.738 1 46.79 ? C10 G2E 2302 A 1 HETATM 2 C C13 G2E . . . G 6 137.431 127.338 132.723 1 46.79 ? C13 G2E 2302 A 1 HETATM 3 C C15 G2E . . . G 6 132.657 127.631 134.83 1 46.79 ? C15 G2E 2302 A 1 HETATM 4 C C17 G2E . . . G 6 134.624 125.664 133.577 1 46.79 ? C17 G2E 2302 A 1 HETATM 5 C C20 G2E . . . G 6 132.222 133.001 133.049 1 46.79 ? C20 G2E 2302 A 1 HETATM 6 C C21 G2E . . . G 6 132.262 126.144 134.69 1 46.79 ? C21 G2E 2302 A 1 HETATM 7 C C22 G2E . . . G 6 138.447 125.057 132.269 1 46.79 ? C22 G2E 2302 A 1 HETATM 8 C C24 G2E . . . G 6 138.88 124.711 130.837 1 46.79 ? C24 G2E 2302 A 1 HETATM 9 C C26 G2E . . . G 6 140.192 123.988 130.869 1 46.79 ? C26 G2E 2302 A 1 HETATM 10 C C06 G2E . . . G 6 134.665 129.453 134.35 1 46.79 ? C06 G2E 2302 A 1 HETATM 11 C C07 G2E . . . G 6 134.031 128.103 134.338 1 46.79 ? C07 G2E 2302 A 1 HETATM 12 C C08 G2E . . . G 6 133.778 130.553 133.823 1 46.79 ? C08 G2E 2302 A 1 HETATM 13 C C09 G2E . . . G 6 135.244 130.051 135.674 1 46.79 ? C09 G2E 2302 A 1 HETATM 14 C C11 G2E . . . G 6 134.997 127.136 133.724 1 46.79 ? C11 G2E 2302 A 1 HETATM 15 C C12 G2E . . . G 6 134.089 131.669 134.438 1 46.79 ? C12 G2E 2302 A 1 HETATM 16 C C14 G2E . . . G 6 132.628 130.522 132.725 1 46.79 ? C14 G2E 2302 A 1 HETATM 17 C C16 G2E . . . G 6 137.133 125.92 132.223 1 46.79 ? C16 G2E 2302 A 1 HETATM 18 C C18 G2E . . . G 6 133.306 133.021 134.083 1 46.79 ? C18 G2E 2302 A 1 HETATM 19 C C19 G2E . . . G 6 131.887 131.799 132.39 1 46.79 ? C19 G2E 2302 A 1 HETATM 20 C C23 G2E . . . G 6 133.236 125.165 134.068 1 46.79 ? C23 G2E 2302 A 1 HETATM 21 C C25 G2E . . . G 6 130.319 133.363 131.965 1 46.79 ? C25 G2E 2302 A 1 HETATM 22 N N05 G2E . . . G 6 136.236 127.898 133.352 1 46.79 ? N05 G2E 2302 A 1 HETATM 23 O O01 G2E . . . G 6 135.253 131.384 135.459 1 46.79 ? O01 G2E 2302 A 1 HETATM 24 O O02 G2E . . . G 6 136.83 130.205 133.576 1 46.79 ? O02 G2E 2302 A 1 HETATM 25 O O03 G2E . . . G 6 130.894 132.074 131.527 1 46.79 ? O03 G2E 2302 A 1 HETATM 26 O O04 G2E . . . G 6 131.347 134.038 132.518 1 46.79 ? O04 G2E 2302 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #