data_7XMC
#
_model_server_result.job_id            4z8eO8YAejLVT6NpmJzrvg 
_model_server_result.datetime_utc      '2025-02-27 01:42:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xmc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":702}' 
#
_entry.id    7XMC 
#
_exptl.entry_id    7XMC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XMC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XMC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 106 A HIS 106 1_555 F FE HEM . A HEM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc2 A ND1 HIS 284 A HIS 284 1_555 G CU CU . A CU 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc3 A NE2 HIS 333 A HIS 333 1_555 G CU CU . A CU 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc4 A NE2 HIS 334 A HIS 334 1_555 G CU CU . A CU 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc5 A NE2 HIS 419 A HIS 419 1_555 E FE HEO . A HEO 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 A NE2 HIS 421 A HIS 421 1_555 F FE HEM . A HEM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7XMC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEO A 1 701 1002 HEO HEO . 
F 6 HEM A 1 702 1001 HEM HEM . 
G 7 CU A 1 703 1003 CU CU . 
H 8 PEE A 1 704 1004 PEE PEE . 
I 9 UNX B 1 401 1005 UNX UNX . 
J 8 PEE C 1 301 301 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 6 176.709 175.622 158.799 1 68.8 ? CHA HEM 702 A 1 
HETATM 2 C CHB HEM . . . F 6 172.927 173.609 156.55 1 68.8 ? CHB HEM 702 A 1 
HETATM 3 C CHC HEM . . . F 6 170.759 172.926 160.858 1 68.8 ? CHC HEM 702 A 1 
HETATM 4 C CHD HEM . . . F 6 174.705 174.604 163.089 1 68.8 ? CHD HEM 702 A 1 
HETATM 5 C C1A HEM . . . F 6 175.837 175.156 157.85 1 68.8 ? C1A HEM 702 A 1 
HETATM 6 C C2A HEM . . . F 6 176.057 175.261 156.469 1 68.8 ? C2A HEM 702 A 1 
HETATM 7 C C3A HEM . . . F 6 175.006 174.701 155.832 1 68.8 ? C3A HEM 702 A 1 
HETATM 8 C C4A HEM . . . F 6 174.119 174.239 156.814 1 68.8 ? C4A HEM 702 A 1 
HETATM 9 C CMA HEM . . . F 6 174.822 174.596 154.346 1 68.8 ? CMA HEM 702 A 1 
HETATM 10 C CAA HEM . . . F 6 177.248 175.887 155.812 1 68.8 ? CAA HEM 702 A 1 
HETATM 11 C CBA HEM . . . F 6 178.306 174.818 155.577 1 68.8 ? CBA HEM 702 A 1 
HETATM 12 C CGA HEM . . . F 6 179.525 175.535 155.09 1 68.8 ? CGA HEM 702 A 1 
HETATM 13 O O1A HEM . . . F 6 180.585 175.46 155.741 1 68.8 ? O1A HEM 702 A 1 
HETATM 14 O O2A HEM . . . F 6 179.462 176.217 154.045 1 68.8 ? O2A HEM 702 A 1 
HETATM 15 C C1B HEM . . . F 6 172.034 173.274 157.567 1 68.8 ? C1B HEM 702 A 1 
HETATM 16 C C2B HEM . . . F 6 170.781 172.689 157.268 1 68.8 ? C2B HEM 702 A 1 
HETATM 17 C C3B HEM . . . F 6 170.142 172.482 158.448 1 68.8 ? C3B HEM 702 A 1 
HETATM 18 C C4B HEM . . . F 6 171.065 172.974 159.499 1 68.8 ? C4B HEM 702 A 1 
HETATM 19 C CMB HEM . . . F 6 170.262 172.358 155.894 1 68.8 ? CMB HEM 702 A 1 
HETATM 20 C CAB HEM . . . F 6 168.803 171.888 158.614 1 68.8 ? CAB HEM 702 A 1 
HETATM 21 C CBB HEM . . . F 6 168.563 170.952 159.527 1 68.8 ? CBB HEM 702 A 1 
HETATM 22 C C1C HEM . . . F 6 171.673 173.26 161.842 1 68.8 ? C1C HEM 702 A 1 
HETATM 23 C C2C HEM . . . F 6 171.511 173.016 163.211 1 68.8 ? C2C HEM 702 A 1 
HETATM 24 C C3C HEM . . . F 6 172.648 173.501 163.844 1 68.8 ? C3C HEM 702 A 1 
HETATM 25 C C4C HEM . . . F 6 173.486 174.037 162.84 1 68.8 ? C4C HEM 702 A 1 
HETATM 26 C CMC HEM . . . F 6 170.305 172.347 163.823 1 68.8 ? CMC HEM 702 A 1 
HETATM 27 C CAC HEM . . . F 6 172.996 173.504 165.276 1 68.8 ? CAC HEM 702 A 1 
HETATM 28 C CBC HEM . . . F 6 172.101 173.736 166.228 1 68.8 ? CBC HEM 702 A 1 
HETATM 29 C C1D HEM . . . F 6 175.541 175.017 162.059 1 68.8 ? C1D HEM 702 A 1 
HETATM 30 C C2D HEM . . . F 6 176.841 175.619 162.352 1 68.8 ? C2D HEM 702 A 1 
HETATM 31 C C3D HEM . . . F 6 177.398 175.904 161.165 1 68.8 ? C3D HEM 702 A 1 
HETATM 32 C C4D HEM . . . F 6 176.44 175.467 160.148 1 68.8 ? C4D HEM 702 A 1 
HETATM 33 C CMD HEM . . . F 6 177.424 175.865 163.717 1 68.8 ? CMD HEM 702 A 1 
HETATM 34 C CAD HEM . . . F 6 178.74 176.533 160.914 1 68.8 ? CAD HEM 702 A 1 
HETATM 35 C CBD HEM . . . F 6 178.664 178.044 161.11 1 68.8 ? CBD HEM 702 A 1 
HETATM 36 C CGD HEM . . . F 6 180.001 178.639 160.763 1 68.8 ? CGD HEM 702 A 1 
HETATM 37 O O1D HEM . . . F 6 180.786 178.009 160.022 1 68.8 ? O1D HEM 702 A 1 
HETATM 38 O O2D HEM . . . F 6 180.324 179.761 161.207 1 68.8 ? O2D HEM 702 A 1 
HETATM 39 N NA HEM . . . F 6 174.637 174.526 158.047 1 68.8 ? NA HEM 702 A 1 
HETATM 40 N NB HEM . . . F 6 172.173 173.43 158.89 1 68.8 ? NB HEM 702 A 1 
HETATM 41 N NC HEM . . . F 6 172.87 173.876 161.634 1 68.8 ? NC HEM 702 A 1 
HETATM 42 N ND HEM . . . F 6 175.35 174.95 160.734 1 68.8 ? ND HEM 702 A 1 
HETATM 43 FE FE HEM . . . F 6 173.859 174.259 159.844 1 68.8 ? FE HEM 702 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#