data_7XME
#
_model_server_result.job_id            NVLIzX3tlZRkWorjorXYEA 
_model_server_result.datetime_utc      '2024-11-12 20:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xme 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":202}' 
#
_entry.id    7XME 
#
_exptl.entry_id    7XME 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              489.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S},3~{S})-3-[[5-dimethoxyphosphoryl-4-(5-fluoranyl-1~{H}-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.31 
_cell.angle_gamma         90 
_cell.entry_id            7XME 
_cell.length_a            176.791 
_cell.length_b            31.306 
_cell.length_c            114.552 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XME 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C22 H25 F N5 O5 P' 
_chem_comp.formula_weight    489.437 
_chem_comp.id                GIH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S},3~{S})-3-[[5-dimethoxyphosphoryl-4-(5-fluoranyl-1~{H}-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-2-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C05 GIH sing 83 n n 
C10 C09 GIH sing 84 n n 
C05 C06 GIH sing 85 n n 
C05 C04 GIH sing 86 n n 
C06 C07 GIH sing 87 n n 
O01 C02 GIH doub 88 n n 
C09 C08 GIH sing 89 n n 
C07 C08 GIH sing 90 n n 
C04 C02 GIH sing 91 n n 
C04 C11 GIH sing 92 n n 
C02 O03 GIH sing 93 n n 
C08 C11 GIH sing 94 n n 
C11 N12 GIH sing 95 n n 
F23 C22 GIH sing 96 n n 
N12 C13 GIH sing 97 n n 
C22 C24 GIH doub 98 n y 
C22 C21 GIH sing 99 n y 
C24 C25 GIH sing 100 n y 
C13 N14 GIH doub 101 n y 
C13 N34 GIH sing 102 n y 
C21 N20 GIH doub 103 n y 
N14 C15 GIH sing 104 n y 
N34 C33 GIH doub 105 n y 
C25 C19 GIH doub 106 n y 
C25 C16 GIH sing 107 n y 
N20 C19 GIH sing 108 n y 
C15 C16 GIH sing 109 n n 
C15 C26 GIH doub 110 n y 
C19 N18 GIH sing 111 n y 
C33 C26 GIH sing 112 n y 
C16 C17 GIH doub 113 n y 
C26 P27 GIH sing 114 n n 
N18 C17 GIH sing 115 n y 
C32 O31 GIH sing 116 n n 
P27 O29 GIH sing 117 n n 
P27 O31 GIH sing 118 n n 
P27 O28 GIH doub 119 n n 
O29 C30 GIH sing 120 n n 
C10 H102 GIH sing 121 n n 
C10 H101 GIH sing 122 n n 
N12 H121 GIH sing 123 n n 
C17 H171 GIH sing 124 n n 
C21 H211 GIH sing 125 n n 
C24 H241 GIH sing 126 n n 
O03 H1 GIH sing 127 n n 
C04 H041 GIH sing 128 n n 
C05 H051 GIH sing 129 n n 
C06 H061 GIH sing 130 n n 
C06 H062 GIH sing 131 n n 
C07 H071 GIH sing 132 n n 
C07 H072 GIH sing 133 n n 
C08 H081 GIH sing 134 n n 
C09 H091 GIH sing 135 n n 
C09 H092 GIH sing 136 n n 
C11 H111 GIH sing 137 n n 
N18 H181 GIH sing 138 n n 
C30 H303 GIH sing 139 n n 
C30 H301 GIH sing 140 n n 
C30 H302 GIH sing 141 n n 
C32 H322 GIH sing 142 n n 
C32 H323 GIH sing 143 n n 
C32 H321 GIH sing 144 n n 
C33 H331 GIH sing 145 n n 
#
_atom_sites.entry_id                     7XME 
_atom_sites.fract_transf_matrix[1][1]    0.005656 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000526 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IOD A 1 201 1 IOD IOD . 
F 3 GIH A 1 202 5 GIH LIG . 
G 2 IOD B 1 201 6 IOD IOD . 
H 3 GIH B 1 202 6 GIH LIG . 
I 2 IOD C 1 201 2 IOD IOD . 
J 3 GIH C 1 202 3 GIH LIG . 
K 2 IOD D 1 201 4 IOD IOD . 
L 3 GIH D 1 202 4 GIH LIG . 
M 4 HOH A 1 301 18 HOH HOH . 
M 4 HOH A 2 302 56 HOH HOH . 
M 4 HOH A 3 303 29 HOH HOH . 
M 4 HOH A 4 304 54 HOH HOH . 
M 4 HOH A 5 305 31 HOH HOH . 
M 4 HOH A 6 306 33 HOH HOH . 
M 4 HOH A 7 307 5 HOH HOH . 
M 4 HOH A 8 308 2 HOH HOH . 
M 4 HOH A 9 309 59 HOH HOH . 
M 4 HOH A 10 310 30 HOH HOH . 
M 4 HOH A 11 311 24 HOH HOH . 
M 4 HOH A 12 312 71 HOH HOH . 
M 4 HOH A 13 313 67 HOH HOH . 
M 4 HOH A 14 314 57 HOH HOH . 
N 4 HOH B 1 301 13 HOH HOH . 
N 4 HOH B 2 302 12 HOH HOH . 
N 4 HOH B 3 303 41 HOH HOH . 
N 4 HOH B 4 304 40 HOH HOH . 
N 4 HOH B 5 305 60 HOH HOH . 
N 4 HOH B 6 306 47 HOH HOH . 
N 4 HOH B 7 307 46 HOH HOH . 
N 4 HOH B 8 308 52 HOH HOH . 
N 4 HOH B 9 309 49 HOH HOH . 
N 4 HOH B 10 310 63 HOH HOH . 
N 4 HOH B 11 311 36 HOH HOH . 
N 4 HOH B 12 312 45 HOH HOH . 
O 4 HOH C 1 301 7 HOH HOH . 
O 4 HOH C 2 302 69 HOH HOH . 
O 4 HOH C 3 303 68 HOH HOH . 
O 4 HOH C 4 304 70 HOH HOH . 
O 4 HOH C 5 305 66 HOH HOH . 
O 4 HOH C 6 306 21 HOH HOH . 
O 4 HOH C 7 307 28 HOH HOH . 
O 4 HOH C 8 308 16 HOH HOH . 
O 4 HOH C 9 309 65 HOH HOH . 
O 4 HOH C 10 310 38 HOH HOH . 
O 4 HOH C 11 311 50 HOH HOH . 
P 4 HOH D 1 301 48 HOH HOH . 
P 4 HOH D 2 302 25 HOH HOH . 
P 4 HOH D 3 303 58 HOH HOH . 
P 4 HOH D 4 304 61 HOH HOH . 
P 4 HOH D 5 305 23 HOH HOH . 
P 4 HOH D 6 306 11 HOH HOH . 
P 4 HOH D 7 307 15 HOH HOH . 
P 4 HOH D 8 308 51 HOH HOH . 
P 4 HOH D 9 309 6 HOH HOH . 
P 4 HOH D 10 310 14 HOH HOH . 
P 4 HOH D 11 311 32 HOH HOH . 
P 4 HOH D 12 312 22 HOH HOH . 
P 4 HOH D 13 313 53 HOH HOH . 
P 4 HOH D 14 314 37 HOH HOH . 
P 4 HOH D 15 315 64 HOH HOH . 
P 4 HOH D 16 316 27 HOH HOH . 
P 4 HOH D 17 317 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 GIH . . . H 3 5.781 10.622 19.787 1 30 ? C10 GIH 202 B 1 
HETATM 2 N N12 GIH . . . H 3 2.222 11.224 18.337 1 30 ? N12 GIH 202 B 1 
HETATM 3 C C13 GIH . . . H 3 1.066 11.007 17.604 1 30 ? C13 GIH 202 B 1 
HETATM 4 C C15 GIH . . . H 3 -0.396 9.697 16.412 1 30 ? C15 GIH 202 B 1 
HETATM 5 C C17 GIH . . . H 3 -1.558 8.008 14.949 1 30 ? C17 GIH 202 B 1 
HETATM 6 C C21 GIH . . . H 3 0.762 4.812 16.597 1 30 ? C21 GIH 202 B 1 
HETATM 7 C C22 GIH . . . H 3 1.299 5.754 17.35 1 30 ? C22 GIH 202 B 1 
HETATM 8 C C24 GIH . . . H 3 0.904 7.016 17.214 1 30 ? C24 GIH 202 B 1 
HETATM 9 C C26 GIH . . . H 3 -1.122 10.827 16.208 1 30 ? C26 GIH 202 B 1 
HETATM 10 O O01 GIH . . . H 3 2.361 10.717 21.908 1 30 ? O01 GIH 202 B 1 
HETATM 11 C C02 GIH . . . H 3 2.337 9.976 21.004 1 30 ? C02 GIH 202 B 1 
HETATM 12 O O03 GIH . . . H 3 1.447 9.12 21.005 1 30 ? O03 GIH 202 B 1 
HETATM 13 C C04 GIH . . . H 3 3.464 10.386 20.049 1 30 ? C04 GIH 202 B 1 
HETATM 14 C C05 GIH . . . H 3 4.727 9.736 20.409 1 30 ? C05 GIH 202 B 1 
HETATM 15 C C06 GIH . . . H 3 4.887 8.466 19.685 1 30 ? C06 GIH 202 B 1 
HETATM 16 C C07 GIH . . . H 3 4.906 8.708 18.206 1 30 ? C07 GIH 202 B 1 
HETATM 17 C C08 GIH . . . H 3 4.282 9.984 17.823 1 30 ? C08 GIH 202 B 1 
HETATM 18 C C09 GIH . . . H 3 5.312 10.966 18.28 1 30 ? C09 GIH 202 B 1 
HETATM 19 C C11 GIH . . . H 3 3.082 10.1 18.663 1 30 ? C11 GIH 202 B 1 
HETATM 20 N N14 GIH . . . H 3 0.709 9.845 17.12 1 30 ? N14 GIH 202 B 1 
HETATM 21 C C16 GIH . . . H 3 -0.688 8.428 15.905 1 30 ? C16 GIH 202 B 1 
HETATM 22 N N18 GIH . . . H 3 -1.468 6.757 14.797 1 30 ? N18 GIH 202 B 1 
HETATM 23 C C19 GIH . . . H 3 -0.565 6.314 15.577 1 30 ? C19 GIH 202 B 1 
HETATM 24 N N20 GIH . . . H 3 -0.146 5.107 15.751 1 30 ? N20 GIH 202 B 1 
HETATM 25 F F23 GIH . . . H 3 2.227 5.502 18.207 1 30 ? F23 GIH 202 B 1 
HETATM 26 C C25 GIH . . . H 3 -0.064 7.294 16.289 1 30 ? C25 GIH 202 B 1 
HETATM 27 P P27 GIH . . . H 3 -2.647 11.004 15.375 1 30 ? P27 GIH 202 B 1 
HETATM 28 O O28 GIH . . . H 3 -3.621 10.136 15.791 1 30 ? O28 GIH 202 B 1 
HETATM 29 O O29 GIH . . . H 3 -3.051 12.491 15.651 1 30 ? O29 GIH 202 B 1 
HETATM 30 C C30 GIH . . . H 3 -4.334 12.91 15.947 1 30 ? C30 GIH 202 B 1 
HETATM 31 O O31 GIH . . . H 3 -2.698 11.045 13.822 1 30 ? O31 GIH 202 B 1 
HETATM 32 C C32 GIH . . . H 3 -1.843 11.821 13.09 1 30 ? C32 GIH 202 B 1 
HETATM 33 C C33 GIH . . . H 3 -0.699 11.996 16.72 1 30 ? C33 GIH 202 B 1 
HETATM 34 N N34 GIH . . . H 3 0.392 12.025 17.397 1 30 ? N34 GIH 202 B 1 
HETATM 35 H H102 GIH . . . H 3 5.864 11.415 20.283 1 30 ? H102 GIH 202 B 1 
HETATM 36 H H101 GIH . . . H 3 6.605 10.171 19.769 1 30 ? H101 GIH 202 B 1 
HETATM 37 H H121 GIH . . . H 3 2.431 12.025 18.598 1 30 ? H121 GIH 202 B 1 
HETATM 38 H H171 GIH . . . H 3 -2.137 8.561 14.477 1 30 ? H171 GIH 202 B 1 
HETATM 39 H H211 GIH . . . H 3 1.029 3.928 16.699 1 30 ? H211 GIH 202 B 1 
HETATM 40 H H241 GIH . . . H 3 1.292 7.692 17.718 1 30 ? H241 GIH 202 B 1 
HETATM 41 H H041 GIH . . . H 3 3.585 11.314 20.128 1 30 ? H041 GIH 202 B 1 
HETATM 42 H H051 GIH . . . H 3 4.837 9.643 21.337 1 30 ? H051 GIH 202 B 1 
HETATM 43 H H061 GIH . . . H 3 4.172 7.897 19.897 1 30 ? H061 GIH 202 B 1 
HETATM 44 H H062 GIH . . . H 3 5.694 8.061 19.944 1 30 ? H062 GIH 202 B 1 
HETATM 45 H H071 GIH . . . H 3 4.446 8.009 17.781 1 30 ? H071 GIH 202 B 1 
HETATM 46 H H072 GIH . . . H 3 5.797 8.708 17.911 1 30 ? H072 GIH 202 B 1 
HETATM 47 H H081 GIH . . . H 3 4.1 10.043 16.904 1 30 ? H081 GIH 202 B 1 
HETATM 48 H H091 GIH . . . H 3 6.055 10.926 17.706 1 30 ? H091 GIH 202 B 1 
HETATM 49 H H092 GIH . . . H 3 4.948 11.831 18.257 1 30 ? H092 GIH 202 B 1 
HETATM 50 H H111 GIH . . . H 3 2.589 9.301 18.628 1 30 ? H111 GIH 202 B 1 
HETATM 51 H H181 GIH . . . H 3 -1.924 6.283 14.231 1 30 ? H181 GIH 202 B 1 
HETATM 52 H H303 GIH . . . H 3 -4.82 12.195 16.313 1 30 ? H303 GIH 202 B 1 
HETATM 53 H H301 GIH . . . H 3 -4.755 13.206 15.161 1 30 ? H301 GIH 202 B 1 
HETATM 54 H H302 GIH . . . H 3 -4.298 13.614 16.567 1 30 ? H302 GIH 202 B 1 
HETATM 55 H H322 GIH . . . H 3 -2.134 12.713 13.111 1 30 ? H322 GIH 202 B 1 
HETATM 56 H H323 GIH . . . H 3 -1.827 11.517 12.202 1 30 ? H323 GIH 202 B 1 
HETATM 57 H H321 GIH . . . H 3 -0.979 11.764 13.455 1 30 ? H321 GIH 202 B 1 
HETATM 58 H H331 GIH . . . H 3 -1.208 12.766 16.616 1 30 ? H331 GIH 202 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           58 
#