data_7XMG # _model_server_result.job_id WGLnaoxGQtHAlefjva5w7g _model_server_result.datetime_utc '2024-10-19 11:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2302}' # _entry.id 7XMG # _exptl.entry_id 7XMG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 516.515 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1~{Z})-~{N}-[2-methyl-3-[(~{E})-[6-[4-[[4-(trifluoromethyloxy)phenyl]methoxy]piperidin-1-yl]-1~{H}-1,3,5-triazin-2-ylidene]amino]phenyl]ethanimidic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XMG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 315 A CYS 315 1_555 A SG CYS 330 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 884 A CYS 895 1_555 C SG CYS 55 F CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? disulf ? disulf3 A SG CYS 886 A CYS 897 1_555 A SG CYS 892 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 924 A CYS 935 1_555 A SG CYS 933 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 1339 A CYS 1350 1_555 A SG CYS 1359 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 1704 A CYS 1715 1_555 A SG CYS 1719 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? disulf ? disulf7 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 50 F CYS 50 1_555 C SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? disulf ? disulf9 C SG CYS 72 F CYS 72 1_555 C SG CYS 75 F CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 1341 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 1355 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 1364 A ASN 1375 1_555 F C1 NAG . A NAG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 B ND2 ASN 93 B ASN 93 1_555 H C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B ND2 ASN 110 B ASN 110 1_555 I C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 B ND2 ASN 114 B ASN 114 1_555 J C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 135 B ASN 135 1_555 K C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C25 H27 F3 N6 O3' _chem_comp.formula_weight 516.515 _chem_comp.id G4I _chem_comp.mon_nstd_flag . _chem_comp.name '(1~{Z})-~{N}-[2-methyl-3-[(~{E})-[6-[4-[[4-(trifluoromethyloxy)phenyl]methoxy]piperidin-1-yl]-1~{H}-1,3,5-triazin-2-ylidene]amino]phenyl]ethanimidic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C30 G4I sing 83 n n N12 C36 G4I doub 84 n n C32 C29 G4I sing 85 n n C30 C29 G4I doub 86 n y C30 C33 G4I sing 87 n y C29 C27 G4I sing 88 n y C33 C34 G4I doub 89 n y C27 N10 G4I sing 90 n n C27 C31 G4I doub 91 n y C34 C31 G4I sing 92 n y N10 C21 G4I doub 93 n n C37 C36 G4I sing 94 n n C36 O06 G4I sing 95 n n C21 N11 G4I sing 96 n n C21 N08 G4I sing 97 n n N11 C24 G4I doub 98 n n F03 C35 G4I sing 99 n n N08 C18 G4I sing 100 n n O05 C35 G4I sing 101 n n O05 C28 G4I sing 102 n n C24 N09 G4I sing 103 n n C25 C28 G4I doub 104 n y C25 C22 G4I sing 105 n y C35 F01 G4I sing 106 n n C35 F02 G4I sing 107 n n C28 C26 G4I sing 108 n y C22 C20 G4I doub 109 n y C18 N09 G4I doub 110 n n C18 N07 G4I sing 111 n n C14 C16 G4I sing 112 n n C14 C13 G4I sing 113 n n C26 C23 G4I doub 114 n y O04 C13 G4I sing 115 n n O04 C19 G4I sing 116 n n C16 N07 G4I sing 117 n n C20 C23 G4I sing 118 n y C20 C19 G4I sing 119 n n N07 C17 G4I sing 120 n n C13 C15 G4I sing 121 n n C15 C17 G4I sing 122 n n C13 H2 G4I sing 123 n n C15 H3 G4I sing 124 n n C15 H4 G4I sing 125 n n C17 H5 G4I sing 126 n n C17 H6 G4I sing 127 n n C22 H7 G4I sing 128 n n C24 H8 G4I sing 129 n n C26 H9 G4I sing 130 n n C14 H10 G4I sing 131 n n C14 H11 G4I sing 132 n n C16 H12 G4I sing 133 n n C16 H13 G4I sing 134 n n C19 H14 G4I sing 135 n n C19 H15 G4I sing 136 n n C23 H16 G4I sing 137 n n C25 H17 G4I sing 138 n n C31 H18 G4I sing 139 n n C32 H19 G4I sing 140 n n C32 H20 G4I sing 141 n n C32 H21 G4I sing 142 n n C33 H22 G4I sing 143 n n C34 H23 G4I sing 144 n n C37 H24 G4I sing 145 n n C37 H25 G4I sing 146 n n C37 H26 G4I sing 147 n n N08 H1 G4I sing 148 n n O06 H27 G4I sing 149 n n # _atom_sites.entry_id 7XMG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2301 2005 NAG NAG . G 6 G4I A 1 2302 2101 G4I LIG . H 5 NAG B 1 501 301 NAG NAG . I 5 NAG B 1 502 302 NAG NAG . J 5 NAG B 1 503 303 NAG NAG . K 5 NAG B 1 504 304 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 G4I . . . G 6 135.924 133.805 126.524 1 47.25 ? N12 G4I 2302 A 1 HETATM 2 C C13 G4I . . . G 6 134.347 130.478 132.072 1 47.25 ? C13 G4I 2302 A 1 HETATM 3 C C15 G4I . . . G 6 132.952 129.89 132.21 1 47.25 ? C15 G4I 2302 A 1 HETATM 4 C C17 G4I . . . G 6 131.967 130.961 132.668 1 47.25 ? C17 G4I 2302 A 1 HETATM 5 C C20 G4I . . . G 6 136.558 127.569 131.738 1 47.25 ? C20 G4I 2302 A 1 HETATM 6 C C21 G4I . . . G 6 130.627 132.64 128.444 1 47.25 ? C21 G4I 2302 A 1 HETATM 7 C C22 G4I . . . G 6 137.154 127.875 130.526 1 47.25 ? C22 G4I 2302 A 1 HETATM 8 C C24 G4I . . . G 6 128.98 131.812 129.81 1 47.25 ? C24 G4I 2302 A 1 HETATM 9 C C26 G4I . . . G 6 137.327 125.306 131.542 1 47.25 ? C26 G4I 2302 A 1 HETATM 10 C C28 G4I . . . G 6 137.925 125.613 130.327 1 47.25 ? C28 G4I 2302 A 1 HETATM 11 C C14 G4I . . . G 6 134.344 131.665 131.11 1 47.25 ? C14 G4I 2302 A 1 HETATM 12 C C16 G4I . . . G 6 133.344 132.727 131.572 1 47.25 ? C16 G4I 2302 A 1 HETATM 13 C C18 G4I . . . G 6 131.088 132.148 130.639 1 47.25 ? C18 G4I 2302 A 1 HETATM 14 C C19 G4I . . . G 6 135.809 128.664 132.498 1 47.25 ? C19 G4I 2302 A 1 HETATM 15 C C23 G4I . . . G 6 136.643 126.283 132.249 1 47.25 ? C23 G4I 2302 A 1 HETATM 16 C C25 G4I . . . G 6 137.835 126.896 129.819 1 47.25 ? C25 G4I 2302 A 1 HETATM 17 C C27 G4I . . . G 6 132.234 134.01 127.039 1 47.25 ? C27 G4I 2302 A 1 HETATM 18 C C29 G4I . . . G 6 133.502 133.481 126.828 1 47.25 ? C29 G4I 2302 A 1 HETATM 19 C C30 G4I . . . G 6 134.596 134.328 126.738 1 47.25 ? C30 G4I 2302 A 1 HETATM 20 C C31 G4I . . . G 6 132.069 135.373 127.161 1 47.25 ? C31 G4I 2302 A 1 HETATM 21 C C32 G4I . . . G 6 133.687 131.967 126.698 1 47.25 ? C32 G4I 2302 A 1 HETATM 22 C C33 G4I . . . G 6 134.426 135.692 126.858 1 47.25 ? C33 G4I 2302 A 1 HETATM 23 C C34 G4I . . . G 6 133.164 136.221 127.067 1 47.25 ? C34 G4I 2302 A 1 HETATM 24 C C35 G4I . . . G 6 139.91 124.383 130.035 1 47.25 ? C35 G4I 2302 A 1 HETATM 25 C C36 G4I . . . G 6 136.753 133.523 127.667 1 47.25 ? C36 G4I 2302 A 1 HETATM 26 C C37 G4I . . . G 6 138.16 132.979 127.474 1 47.25 ? C37 G4I 2302 A 1 HETATM 27 F F01 G4I . . . G 6 140.545 125.553 130.315 1 47.25 ? F01 G4I 2302 A 1 HETATM 28 F F02 G4I . . . G 6 139.882 123.614 131.157 1 47.25 ? F02 G4I 2302 A 1 HETATM 29 F F03 G4I . . . G 6 140.582 123.724 129.05 1 47.25 ? F03 G4I 2302 A 1 HETATM 30 N N07 G4I . . . G 6 132.045 132.091 131.75 1 47.25 ? N07 G4I 2302 A 1 HETATM 31 N N08 G4I . . . G 6 131.487 132.586 129.455 1 47.25 ? N08 G4I 2302 A 1 HETATM 32 N N09 G4I . . . G 6 129.84 131.76 130.818 1 47.25 ? N09 G4I 2302 A 1 HETATM 33 N N10 G4I . . . G 6 131.074 133.126 127.134 1 47.25 ? N10 G4I 2302 A 1 HETATM 34 N N11 G4I . . . G 6 129.377 132.251 128.622 1 47.25 ? N11 G4I 2302 A 1 HETATM 35 O O04 G4I . . . G 6 135.189 129.487 131.542 1 47.25 ? O04 G4I 2302 A 1 HETATM 36 O O05 G4I . . . G 6 138.608 124.633 129.608 1 47.25 ? O05 G4I 2302 A 1 HETATM 37 O O06 G4I . . . G 6 136.338 133.713 128.759 1 47.25 ? O06 G4I 2302 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #