data_7XMN # _model_server_result.job_id h8ppXiLA8owd_JFyYA5SWA _model_server_result.datetime_utc '2024-11-18 09:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 7XMN # _exptl.entry_id 7XMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.174 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NOR-N-OMEGA-HYDROXY-L-ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XMN _cell.length_a 140.088 _cell.length_b 146.693 _cell.length_c 74.718 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC A 401 MAL 3 n C GLC 2 C 2 GLC A 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 5 B CYS 20 1_555 B SG CYS 5 B CYS 20 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 10 B CYS 25 1_555 B SG CYS 75 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 22 B CYS 37 1_555 B SG CYS 87 B CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 46 B CYS 61 1_555 B SG CYS 68 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 63 B ASN 78 1_555 H C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? # _chem_comp.formula 'C5 H12 N4 O3' _chem_comp.formula_weight 176.174 _chem_comp.id NNH _chem_comp.mon_nstd_flag n _chem_comp.name NOR-N-OMEGA-HYDROXY-L-ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA NNH sing 316 n n N H NNH sing 317 n n N H2 NNH sing 318 n n CA C NNH sing 319 n n CA CB NNH sing 320 n n CA HA NNH sing 321 n n C O NNH doub 322 n n C OXT NNH sing 323 n n CB CG NNH sing 324 n n CB HB2 NNH sing 325 n n CB HB3 NNH sing 326 n n CG ND NNH sing 327 n n CG HG2 NNH sing 328 n n CG HG3 NNH sing 329 n n ND CE NNH sing 330 n n ND HD NNH sing 331 n n CE NH1 NNH sing 332 n n CE NH2 NNH doub 333 n n NH1 OH1 NNH sing 334 n n NH1 HH1 NNH sing 335 n n NH2 HH2 NNH sing 336 n n OH1 HO1 NNH sing 337 n n OXT HXT NNH sing 338 n n # _atom_sites.entry_id 7XMN _atom_sites.fract_transf_matrix[1][1] 0.007138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MES A 1 401 402 MES MES . E 5 SO4 A 1 402 3 SO4 SO4 . F 5 SO4 A 1 403 4 SO4 SO4 . G 5 SO4 A 1 404 5 SO4 SO4 . H 6 NAG B 1 201 201 NAG NAG . I 7 NNH B 1 202 202 NNH NNH . J 5 SO4 B 1 203 1 SO4 SO4 . K 5 SO4 B 1 204 2 SO4 SO4 . L 8 HOH A 1 501 7 HOH HOH . L 8 HOH A 2 502 2 HOH HOH . L 8 HOH A 3 503 63 HOH HOH . L 8 HOH A 4 504 27 HOH HOH . L 8 HOH A 5 505 50 HOH HOH . L 8 HOH A 6 506 51 HOH HOH . L 8 HOH A 7 507 37 HOH HOH . L 8 HOH A 8 508 10 HOH HOH . L 8 HOH A 9 509 38 HOH HOH . L 8 HOH A 10 510 6 HOH HOH . L 8 HOH A 11 511 39 HOH HOH . L 8 HOH A 12 512 56 HOH HOH . L 8 HOH A 13 513 72 HOH HOH . L 8 HOH A 14 514 28 HOH HOH . L 8 HOH A 15 515 74 HOH HOH . L 8 HOH A 16 516 34 HOH HOH . L 8 HOH A 17 517 22 HOH HOH . L 8 HOH A 18 518 4 HOH HOH . L 8 HOH A 19 519 3 HOH HOH . L 8 HOH A 20 520 45 HOH HOH . L 8 HOH A 21 521 1 HOH HOH . L 8 HOH A 22 522 76 HOH HOH . L 8 HOH A 23 523 25 HOH HOH . L 8 HOH A 24 524 84 HOH HOH . L 8 HOH A 25 525 33 HOH HOH . L 8 HOH A 26 526 77 HOH HOH . L 8 HOH A 27 527 85 HOH HOH . L 8 HOH A 28 528 11 HOH HOH . L 8 HOH A 29 529 67 HOH HOH . L 8 HOH A 30 530 17 HOH HOH . L 8 HOH A 31 531 64 HOH HOH . L 8 HOH A 32 532 18 HOH HOH . L 8 HOH A 33 533 35 HOH HOH . L 8 HOH A 34 534 66 HOH HOH . L 8 HOH A 35 535 19 HOH HOH . L 8 HOH A 36 536 23 HOH HOH . L 8 HOH A 37 537 29 HOH HOH . L 8 HOH A 38 538 40 HOH HOH . L 8 HOH A 39 539 20 HOH HOH . L 8 HOH A 40 540 80 HOH HOH . L 8 HOH A 41 541 41 HOH HOH . L 8 HOH A 42 542 43 HOH HOH . L 8 HOH A 43 543 9 HOH HOH . L 8 HOH A 44 544 26 HOH HOH . L 8 HOH A 45 545 52 HOH HOH . L 8 HOH A 46 546 58 HOH HOH . L 8 HOH A 47 547 70 HOH HOH . L 8 HOH A 48 548 71 HOH HOH . L 8 HOH A 49 549 81 HOH HOH . L 8 HOH A 50 550 31 HOH HOH . L 8 HOH A 51 551 42 HOH HOH . L 8 HOH A 52 552 36 HOH HOH . L 8 HOH A 53 553 55 HOH HOH . L 8 HOH A 54 554 48 HOH HOH . L 8 HOH A 55 555 86 HOH HOH . L 8 HOH A 56 556 65 HOH HOH . L 8 HOH A 57 557 54 HOH HOH . M 8 HOH B 1 301 32 HOH HOH . M 8 HOH B 2 302 62 HOH HOH . M 8 HOH B 3 303 8 HOH HOH . M 8 HOH B 4 304 78 HOH HOH . M 8 HOH B 5 305 5 HOH HOH . M 8 HOH B 6 306 16 HOH HOH . M 8 HOH B 7 307 15 HOH HOH . M 8 HOH B 8 308 47 HOH HOH . M 8 HOH B 9 309 61 HOH HOH . M 8 HOH B 10 310 12 HOH HOH . M 8 HOH B 11 311 30 HOH HOH . M 8 HOH B 12 312 79 HOH HOH . M 8 HOH B 13 313 73 HOH HOH . M 8 HOH B 14 314 59 HOH HOH . M 8 HOH B 15 315 69 HOH HOH . M 8 HOH B 16 316 14 HOH HOH . M 8 HOH B 17 317 83 HOH HOH . M 8 HOH B 18 318 21 HOH HOH . M 8 HOH B 19 319 60 HOH HOH . M 8 HOH B 20 320 53 HOH HOH . M 8 HOH B 21 321 46 HOH HOH . M 8 HOH B 22 322 49 HOH HOH . M 8 HOH B 23 323 24 HOH HOH . M 8 HOH B 24 324 44 HOH HOH . M 8 HOH B 25 325 68 HOH HOH . M 8 HOH B 26 326 82 HOH HOH . M 8 HOH B 27 327 57 HOH HOH . M 8 HOH B 28 328 13 HOH HOH . M 8 HOH B 29 329 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NNH . . . I 7 49.83 -4.704 -13.616 1 55.08 ? N NNH 202 B 1 HETATM 2 C CA NNH . . . I 7 49.115 -5.878 -14.061 1 48.96 ? CA NNH 202 B 1 HETATM 3 C C NNH . . . I 7 47.679 -5.501 -14.396 1 50.66 ? C NNH 202 B 1 HETATM 4 O O NNH . . . I 7 47.352 -5.707 -15.699 1 52.1 ? O NNH 202 B 1 HETATM 5 C CB NNH . . . I 7 49.074 -7.029 -13.038 1 51.98 ? CB NNH 202 B 1 HETATM 6 C CG NNH . . . I 7 49.03 -8.366 -13.777 1 64.18 ? CG NNH 202 B 1 HETATM 7 N ND NNH . . . I 7 49.433 -9.491 -12.954 1 51.44 ? ND NNH 202 B 1 HETATM 8 C CE NNH . . . I 7 49.511 -10.824 -13.478 1 63.43 ? CE NNH 202 B 1 HETATM 9 N NH1 NNH . . . I 7 49.137 -10.874 -14.92 1 71.88 ? NH1 NNH 202 B 1 HETATM 10 N NH2 NNH . . . I 7 49.872 -11.841 -12.744 1 62.51 ? NH2 NNH 202 B 1 HETATM 11 O OH1 NNH . . . I 7 49.132 -12.004 -15.635 1 66.55 ? OH1 NNH 202 B 1 HETATM 12 O OXT NNH . . . I 7 46.801 -5.044 -13.664 1 60.13 ? OXT NNH 202 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #