data_7XMN # _model_server_result.job_id 4HSXIqWUXlOmPrIZ-lCAJA _model_server_result.datetime_utc '2024-11-18 09:41:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7XMN # _exptl.entry_id 7XMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XMN _cell.length_a 140.088 _cell.length_b 146.693 _cell.length_c 74.718 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC A 401 MAL 3 n C GLC 2 C 2 GLC A 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 5 B CYS 20 1_555 B SG CYS 5 B CYS 20 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 10 B CYS 25 1_555 B SG CYS 75 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 22 B CYS 37 1_555 B SG CYS 87 B CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 46 B CYS 61 1_555 B SG CYS 68 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B ND2 ASN 63 B ASN 78 1_555 H C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 242 n n O1 C6 MES sing 243 n n C2 C3 MES sing 244 n n C2 H21 MES sing 245 n n C2 H22 MES sing 246 n n C3 N4 MES sing 247 n n C3 H31 MES sing 248 n n C3 H32 MES sing 249 n n N4 C5 MES sing 250 n n N4 C7 MES sing 251 n n N4 HN4 MES sing 252 n n C5 C6 MES sing 253 n n C5 H51 MES sing 254 n n C5 H52 MES sing 255 n n C6 H61 MES sing 256 n n C6 H62 MES sing 257 n n C7 C8 MES sing 258 n n C7 H71 MES sing 259 n n C7 H72 MES sing 260 n n C8 S MES sing 261 n n C8 H81 MES sing 262 n n C8 H82 MES sing 263 n n S O1S MES doub 264 n n S O2S MES doub 265 n n S O3S MES sing 266 n n # _atom_sites.entry_id 7XMN _atom_sites.fract_transf_matrix[1][1] 0.007138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MES A 1 401 402 MES MES . E 5 SO4 A 1 402 3 SO4 SO4 . F 5 SO4 A 1 403 4 SO4 SO4 . G 5 SO4 A 1 404 5 SO4 SO4 . H 6 NAG B 1 201 201 NAG NAG . I 7 NNH B 1 202 202 NNH NNH . J 5 SO4 B 1 203 1 SO4 SO4 . K 5 SO4 B 1 204 2 SO4 SO4 . L 8 HOH A 1 501 7 HOH HOH . L 8 HOH A 2 502 2 HOH HOH . L 8 HOH A 3 503 63 HOH HOH . L 8 HOH A 4 504 27 HOH HOH . L 8 HOH A 5 505 50 HOH HOH . L 8 HOH A 6 506 51 HOH HOH . L 8 HOH A 7 507 37 HOH HOH . L 8 HOH A 8 508 10 HOH HOH . L 8 HOH A 9 509 38 HOH HOH . L 8 HOH A 10 510 6 HOH HOH . L 8 HOH A 11 511 39 HOH HOH . L 8 HOH A 12 512 56 HOH HOH . L 8 HOH A 13 513 72 HOH HOH . L 8 HOH A 14 514 28 HOH HOH . L 8 HOH A 15 515 74 HOH HOH . L 8 HOH A 16 516 34 HOH HOH . L 8 HOH A 17 517 22 HOH HOH . L 8 HOH A 18 518 4 HOH HOH . L 8 HOH A 19 519 3 HOH HOH . L 8 HOH A 20 520 45 HOH HOH . L 8 HOH A 21 521 1 HOH HOH . L 8 HOH A 22 522 76 HOH HOH . L 8 HOH A 23 523 25 HOH HOH . L 8 HOH A 24 524 84 HOH HOH . L 8 HOH A 25 525 33 HOH HOH . L 8 HOH A 26 526 77 HOH HOH . L 8 HOH A 27 527 85 HOH HOH . L 8 HOH A 28 528 11 HOH HOH . L 8 HOH A 29 529 67 HOH HOH . L 8 HOH A 30 530 17 HOH HOH . L 8 HOH A 31 531 64 HOH HOH . L 8 HOH A 32 532 18 HOH HOH . L 8 HOH A 33 533 35 HOH HOH . L 8 HOH A 34 534 66 HOH HOH . L 8 HOH A 35 535 19 HOH HOH . L 8 HOH A 36 536 23 HOH HOH . L 8 HOH A 37 537 29 HOH HOH . L 8 HOH A 38 538 40 HOH HOH . L 8 HOH A 39 539 20 HOH HOH . L 8 HOH A 40 540 80 HOH HOH . L 8 HOH A 41 541 41 HOH HOH . L 8 HOH A 42 542 43 HOH HOH . L 8 HOH A 43 543 9 HOH HOH . L 8 HOH A 44 544 26 HOH HOH . L 8 HOH A 45 545 52 HOH HOH . L 8 HOH A 46 546 58 HOH HOH . L 8 HOH A 47 547 70 HOH HOH . L 8 HOH A 48 548 71 HOH HOH . L 8 HOH A 49 549 81 HOH HOH . L 8 HOH A 50 550 31 HOH HOH . L 8 HOH A 51 551 42 HOH HOH . L 8 HOH A 52 552 36 HOH HOH . L 8 HOH A 53 553 55 HOH HOH . L 8 HOH A 54 554 48 HOH HOH . L 8 HOH A 55 555 86 HOH HOH . L 8 HOH A 56 556 65 HOH HOH . L 8 HOH A 57 557 54 HOH HOH . M 8 HOH B 1 301 32 HOH HOH . M 8 HOH B 2 302 62 HOH HOH . M 8 HOH B 3 303 8 HOH HOH . M 8 HOH B 4 304 78 HOH HOH . M 8 HOH B 5 305 5 HOH HOH . M 8 HOH B 6 306 16 HOH HOH . M 8 HOH B 7 307 15 HOH HOH . M 8 HOH B 8 308 47 HOH HOH . M 8 HOH B 9 309 61 HOH HOH . M 8 HOH B 10 310 12 HOH HOH . M 8 HOH B 11 311 30 HOH HOH . M 8 HOH B 12 312 79 HOH HOH . M 8 HOH B 13 313 73 HOH HOH . M 8 HOH B 14 314 59 HOH HOH . M 8 HOH B 15 315 69 HOH HOH . M 8 HOH B 16 316 14 HOH HOH . M 8 HOH B 17 317 83 HOH HOH . M 8 HOH B 18 318 21 HOH HOH . M 8 HOH B 19 319 60 HOH HOH . M 8 HOH B 20 320 53 HOH HOH . M 8 HOH B 21 321 46 HOH HOH . M 8 HOH B 22 322 49 HOH HOH . M 8 HOH B 23 323 24 HOH HOH . M 8 HOH B 24 324 44 HOH HOH . M 8 HOH B 25 325 68 HOH HOH . M 8 HOH B 26 326 82 HOH HOH . M 8 HOH B 27 327 57 HOH HOH . M 8 HOH B 28 328 13 HOH HOH . M 8 HOH B 29 329 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 4 35.378 49.457 11.361 1 52.19 ? O1 MES 401 A 1 HETATM 2 C C2 MES . . . D 4 34.176 48.73 11.1 1 39.37 ? C2 MES 401 A 1 HETATM 3 C C3 MES . . . D 4 33.576 49.094 9.748 1 42.91 ? C3 MES 401 A 1 HETATM 4 N N4 MES . . . D 4 34.704 49.165 8.824 1 43.22 ? N4 MES 401 A 1 HETATM 5 C C5 MES . . . D 4 35.708 50.195 9.066 1 41.88 ? C5 MES 401 A 1 HETATM 6 C C6 MES . . . D 4 35.568 50.604 10.528 1 39.37 ? C6 MES 401 A 1 HETATM 7 C C7 MES . . . D 4 34.526 48.699 7.449 1 46.68 ? C7 MES 401 A 1 HETATM 8 C C8 MES . . . D 4 33.054 48.312 7.331 1 55.08 ? C8 MES 401 A 1 HETATM 9 S S MES . . . D 4 32.574 48.109 5.755 1 59.32 ? S MES 401 A 1 HETATM 10 O O1S MES . . . D 4 33.731 48.184 4.835 1 49.78 ? O1S MES 401 A 1 HETATM 11 O O2S MES . . . D 4 31.593 49.172 5.44 1 61.49 ? O2S MES 401 A 1 HETATM 12 O O3S MES . . . D 4 31.905 46.796 5.619 1 50.7 ? O3S MES 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #