data_7XMT
#
_model_server_result.job_id            PCeKq5hNtL-JZJP7YJCGQg 
_model_server_result.datetime_utc      '2024-10-11 00:29:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7XMT 
#
_exptl.entry_id    7XMT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              468.569 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-[[(2~{S})-4-azanyl-2-[(4-methylnaphthalen-1-yl)sulfonylamino]butanoyl]amino]-3-phenyl-propanimidic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XMT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 128 R CYS 119 1_555 A SG CYS 207 R CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 188 S CYS 159 1_555 C SG CYS 258 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C24 H28 N4 O4 S' 
_chem_comp.formula_weight    468.569 
_chem_comp.id                I8B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-[[(2~{S})-4-azanyl-2-[(4-methylnaphthalen-1-yl)sulfonylamino]butanoyl]amino]-3-phenyl-propanimidic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 I8B doub 150 n y 
C15 C16 I8B sing 151 n y 
C14 C13 I8B sing 152 n y 
C16 C11 I8B doub 153 n y 
C13 C12 I8B doub 154 n y 
O1 S I8B doub 155 n n 
C11 C12 I8B sing 156 n y 
C11 C9 I8B sing 157 n y 
C12 C6 I8B sing 158 n y 
C10 C9 I8B sing 159 n n 
C9 C8 I8B doub 160 n y 
C6 S I8B sing 161 n n 
C6 C7 I8B doub 162 n y 
S N3 I8B sing 163 n n 
S O I8B doub 164 n n 
C8 C7 I8B sing 165 n y 
N3 C3 I8B sing 166 n n 
C4 C3 I8B sing 167 n n 
C4 C5 I8B sing 168 n n 
C3 C2 I8B sing 169 n n 
N2 C5 I8B sing 170 n n 
C2 N1 I8B sing 171 n n 
C2 O2 I8B doub 172 n n 
N1 C1 I8B sing 173 n n 
O3 C I8B sing 174 n n 
C20 C19 I8B doub 175 n y 
C20 C21 I8B sing 176 n y 
C19 C18 I8B sing 177 n y 
C21 C22 I8B doub 178 n y 
C C1 I8B sing 179 n n 
C N I8B doub 180 n n 
C1 C17 I8B sing 181 n n 
C18 C17 I8B sing 182 n n 
C18 C23 I8B doub 183 n y 
C22 C23 I8B sing 184 n y 
C1 H1 I8B sing 185 n n 
C3 H2 I8B sing 186 n n 
C4 H3 I8B sing 187 n n 
C4 H4 I8B sing 188 n n 
C5 H5 I8B sing 189 n n 
C5 H6 I8B sing 190 n n 
C8 H7 I8B sing 191 n n 
C7 H8 I8B sing 192 n n 
C10 H9 I8B sing 193 n n 
C10 H10 I8B sing 194 n n 
C10 H11 I8B sing 195 n n 
C13 H12 I8B sing 196 n n 
C14 H13 I8B sing 197 n n 
C15 H14 I8B sing 198 n n 
C16 H15 I8B sing 199 n n 
C17 H16 I8B sing 200 n n 
C17 H17 I8B sing 201 n n 
C19 H18 I8B sing 202 n n 
C20 H19 I8B sing 203 n n 
C21 H20 I8B sing 204 n n 
C22 H21 I8B sing 205 n n 
C23 H22 I8B sing 206 n n 
N H23 I8B sing 207 n n 
N1 H25 I8B sing 208 n n 
N2 H26 I8B sing 209 n n 
N2 H27 I8B sing 210 n n 
N3 H29 I8B sing 211 n n 
O3 H30 I8B sing 212 n n 
#
_atom_sites.entry_id                     7XMT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           I8B 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       I8B 
_pdbx_nonpoly_scheme.auth_mon_id      156 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I8B . . . F 6 151.841 116.765 145.616 1 83.75 ? C1 I8B 401 R 1 
HETATM 2 C C2 I8B . . . F 6 152.298 118.296 143.776 1 83.75 ? C2 I8B 401 R 1 
HETATM 3 C C3 I8B . . . F 6 151.904 118.768 142.377 1 83.75 ? C3 I8B 401 R 1 
HETATM 4 C C4 I8B . . . F 6 150.451 119.243 142.367 1 83.75 ? C4 I8B 401 R 1 
HETATM 5 C C5 I8B . . . F 6 150.192 120.418 143.297 1 83.75 ? C5 I8B 401 R 1 
HETATM 6 C C8 I8B . . . F 6 156.222 120.369 141.247 1 83.75 ? C8 I8B 401 R 1 
HETATM 7 C C9 I8B . . . F 6 155.803 121.421 140.465 1 83.75 ? C9 I8B 401 R 1 
HETATM 8 C C6 I8B . . . F 6 154.377 119.002 140.579 1 83.75 ? C6 I8B 401 R 1 
HETATM 9 C C7 I8B . . . F 6 155.525 119.178 141.306 1 83.75 ? C7 I8B 401 R 1 
HETATM 10 C C10 I8B . . . F 6 156.589 122.703 140.436 1 83.75 ? C10 I8B 401 R 1 
HETATM 11 C C11 I8B . . . F 6 154.61 121.271 139.69 1 83.75 ? C11 I8B 401 R 1 
HETATM 12 C C12 I8B . . . F 6 153.878 120.045 139.741 1 83.75 ? C12 I8B 401 R 1 
HETATM 13 C C13 I8B . . . F 6 152.699 119.929 138.961 1 83.75 ? C13 I8B 401 R 1 
HETATM 14 C C14 I8B . . . F 6 152.272 120.96 138.177 1 83.75 ? C14 I8B 401 R 1 
HETATM 15 C C15 I8B . . . F 6 152.981 122.146 138.125 1 83.75 ? C15 I8B 401 R 1 
HETATM 16 C C16 I8B . . . F 6 154.12 122.309 138.858 1 83.75 ? C16 I8B 401 R 1 
HETATM 17 C C17 I8B . . . F 6 150.589 116.843 146.506 1 83.75 ? C17 I8B 401 R 1 
HETATM 18 C C18 I8B . . . F 6 149.462 115.952 146.043 1 83.75 ? C18 I8B 401 R 1 
HETATM 19 C C19 I8B . . . F 6 148.659 116.319 144.973 1 83.75 ? C19 I8B 401 R 1 
HETATM 20 C C20 I8B . . . F 6 147.624 115.501 144.551 1 83.75 ? C20 I8B 401 R 1 
HETATM 21 C C21 I8B . . . F 6 147.378 114.309 145.192 1 83.75 ? C21 I8B 401 R 1 
HETATM 22 C C22 I8B . . . F 6 148.165 113.932 146.256 1 83.75 ? C22 I8B 401 R 1 
HETATM 23 C C23 I8B . . . F 6 149.202 114.747 146.679 1 83.75 ? C23 I8B 401 R 1 
HETATM 24 O O1 I8B . . . F 6 153.327 116.933 139.408 1 83.75 ? O1 I8B 401 R 1 
HETATM 25 O O2 I8B . . . F 6 153.233 118.825 144.372 1 83.75 ? O2 I8B 401 R 1 
HETATM 26 O O3 I8B . . . F 6 152.061 114.652 144.508 1 83.75 ? O3 I8B 401 R 1 
HETATM 27 N N I8B . . . F 6 153.054 114.862 146.516 1 83.75 ? N I8B 401 R 1 
HETATM 28 C C I8B . . . F 6 152.335 115.324 145.505 1 83.75 ? C I8B 401 R 1 
HETATM 29 O O I8B . . . F 6 154.277 116.647 141.673 1 83.75 ? O I8B 401 R 1 
HETATM 30 N N1 I8B . . . F 6 151.574 117.298 144.291 1 83.75 ? N1 I8B 401 R 1 
HETATM 31 N N2 I8B . . . F 6 148.798 120.869 143.258 1 83.75 ? N2 I8B 401 R 1 
HETATM 32 N N3 I8B . . . F 6 152.1 117.721 141.373 1 83.75 ? N3 I8B 401 R 1 
HETATM 33 S S I8B . . . F 6 153.554 117.441 140.727 1 83.75 ? S I8B 401 R 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#