data_7XN1 # _model_server_result.job_id iQ6YrrtMmmIsOVtMqWx2TQ _model_server_result.datetime_utc '2024-10-15 00:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 7XN1 # _exptl.entry_id 7XN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.436 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XN1 _cell.length_a 104.578 _cell.length_b 104.578 _cell.length_c 322.501 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 543 NAG 2 n C NAG 2 C 2 NAG A 544 NAG 2 n C FUC 3 C 3 FUC A 545 FUC 3 n D NAG 1 D 1 NAG B 543 NAG 3 n D FUC 2 D 2 FUC B 544 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 69 1_555 A SG CYS 93 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 254 A CYS 257 1_555 A SG CYS 269 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf3 A SG CYS 406 A CYS 409 1_555 A SG CYS 526 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 66 B CYS 69 1_555 B SG CYS 93 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 254 B CYS 257 1_555 B SG CYS 269 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf6 B SG CYS 406 B CYS 409 1_555 B SG CYS 526 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 347 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 347 B ASN 350 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C16 H34 O9' _chem_comp.formula_weight 370.436 _chem_comp.id PE8 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 PE8 sing 290 n n O1 HO1 PE8 sing 291 n n C2 C3 PE8 sing 292 n n C2 H21 PE8 sing 293 n n C2 H22 PE8 sing 294 n n C3 O4 PE8 sing 295 n n C3 H31 PE8 sing 296 n n C3 H32 PE8 sing 297 n n O4 C5 PE8 sing 298 n n C5 C6 PE8 sing 299 n n C5 H51 PE8 sing 300 n n C5 H52 PE8 sing 301 n n C6 O7 PE8 sing 302 n n C6 H61 PE8 sing 303 n n C6 H62 PE8 sing 304 n n O7 C8 PE8 sing 305 n n C8 C9 PE8 sing 306 n n C8 H81 PE8 sing 307 n n C8 H82 PE8 sing 308 n n C9 O10 PE8 sing 309 n n C9 H91 PE8 sing 310 n n C9 H92 PE8 sing 311 n n O10 C11 PE8 sing 312 n n C11 C12 PE8 sing 313 n n C11 H111 PE8 sing 314 n n C11 H112 PE8 sing 315 n n C12 O13 PE8 sing 316 n n C12 H121 PE8 sing 317 n n C12 H122 PE8 sing 318 n n O13 C14 PE8 sing 319 n n C14 C15 PE8 sing 320 n n C14 H141 PE8 sing 321 n n C14 H142 PE8 sing 322 n n C15 O16 PE8 sing 323 n n C15 H151 PE8 sing 324 n n C15 H152 PE8 sing 325 n n O16 C17 PE8 sing 326 n n C17 C18 PE8 sing 327 n n C17 H171 PE8 sing 328 n n C17 H172 PE8 sing 329 n n C18 O19 PE8 sing 330 n n C18 H181 PE8 sing 331 n n C18 H182 PE8 sing 332 n n O19 C20 PE8 sing 333 n n C20 C21 PE8 sing 334 n n C20 H201 PE8 sing 335 n n C20 H202 PE8 sing 336 n n C21 O22 PE8 sing 337 n n C21 H211 PE8 sing 338 n n C21 H212 PE8 sing 339 n n O22 C23 PE8 sing 340 n n C23 C24 PE8 sing 341 n n C23 H231 PE8 sing 342 n n C23 H232 PE8 sing 343 n n C24 O25 PE8 sing 344 n n C24 H241 PE8 sing 345 n n C24 H242 PE8 sing 346 n n O25 H25 PE8 sing 347 n n # _atom_sites.entry_id 7XN1 _atom_sites.fract_transf_matrix[1][1] 0.009562 _atom_sites.fract_transf_matrix[1][2] 0.005521 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 THA A 1 601 546 THA THA . F 5 PE8 A 1 602 547 PE8 PE8 . G 4 THA B 1 601 545 THA THA . H 6 HOH A 1 701 557 HOH HOH . H 6 HOH A 2 702 556 HOH HOH . H 6 HOH A 3 703 548 HOH HOH . H 6 HOH A 4 704 558 HOH HOH . H 6 HOH A 5 705 559 HOH HOH . H 6 HOH A 6 706 553 HOH HOH . H 6 HOH A 7 707 561 HOH HOH . H 6 HOH A 8 708 560 HOH HOH . H 6 HOH A 9 709 562 HOH HOH . H 6 HOH A 10 710 550 HOH HOH . H 6 HOH A 11 711 555 HOH HOH . H 6 HOH A 12 712 554 HOH HOH . H 6 HOH A 13 713 549 HOH HOH . H 6 HOH A 14 714 552 HOH HOH . H 6 HOH A 15 715 551 HOH HOH . I 6 HOH B 1 701 554 HOH HOH . I 6 HOH B 2 702 549 HOH HOH . I 6 HOH B 3 703 563 HOH HOH . I 6 HOH B 4 704 553 HOH HOH . I 6 HOH B 5 705 546 HOH HOH . I 6 HOH B 6 706 551 HOH HOH . I 6 HOH B 7 707 552 HOH HOH . I 6 HOH B 8 708 555 HOH HOH . I 6 HOH B 9 709 560 HOH HOH . I 6 HOH B 10 710 562 HOH HOH . I 6 HOH B 11 711 557 HOH HOH . I 6 HOH B 12 712 547 HOH HOH . I 6 HOH B 13 713 559 HOH HOH . I 6 HOH B 14 714 561 HOH HOH . I 6 HOH B 15 715 550 HOH HOH . I 6 HOH B 16 716 556 HOH HOH . I 6 HOH B 17 717 548 HOH HOH . I 6 HOH B 18 718 558 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE8 . . . F 5 46.031 -6.417 -21.339 1 62.3 ? O1 PE8 602 A 1 HETATM 2 C C2 PE8 . . . F 5 45.052 -6.792 -22.275 1 53.19 ? C2 PE8 602 A 1 HETATM 3 C C3 PE8 . . . F 5 44.956 -8.323 -22.318 1 50.84 ? C3 PE8 602 A 1 HETATM 4 O O4 PE8 . . . F 5 44.28 -8.799 -21.171 1 51.43 ? O4 PE8 602 A 1 HETATM 5 C C5 PE8 . . . F 5 44.696 -10.018 -20.576 1 44.27 ? C5 PE8 602 A 1 HETATM 6 C C6 PE8 . . . F 5 46.052 -9.744 -19.923 1 37.25 ? C6 PE8 602 A 1 HETATM 7 O O7 PE8 . . . F 5 46.85 -10.738 -19.323 1 41.99 ? O7 PE8 602 A 1 HETATM 8 C C8 PE8 . . . F 5 48.271 -10.712 -19.471 1 36.48 ? C8 PE8 602 A 1 HETATM 9 C C9 PE8 . . . F 5 49.101 -9.939 -18.416 1 35.43 ? C9 PE8 602 A 1 HETATM 10 O O10 PE8 . . . F 5 49.731 -8.789 -18.949 1 52.88 ? O10 PE8 602 A 1 HETATM 11 C C11 PE8 . . . F 5 50.986 -8.981 -19.566 1 42.89 ? C11 PE8 602 A 1 HETATM 12 C C12 PE8 . . . F 5 51.248 -7.984 -20.722 1 47.54 ? C12 PE8 602 A 1 HETATM 13 O O13 PE8 . . . F 5 50.092 -7.607 -21.459 1 51.36 ? O13 PE8 602 A 1 HETATM 14 C C14 PE8 . . . F 5 50.262 -6.862 -22.668 1 51.89 ? C14 PE8 602 A 1 HETATM 15 C C15 PE8 . . . F 5 48.955 -6.542 -23.435 1 55.7 ? C15 PE8 602 A 1 HETATM 16 O O16 PE8 . . . F 5 48.833 -7.146 -24.69 1 50.02 ? O16 PE8 602 A 1 HETATM 17 C C17 PE8 . . . F 5 47.552 -7.037 -25.233 1 46.83 ? C17 PE8 602 A 1 HETATM 18 C C18 PE8 . . . F 5 47.038 -8.427 -25.589 1 47.35 ? C18 PE8 602 A 1 HETATM 19 O O19 PE8 . . . F 5 47.508 -8.74 -26.887 1 57.41 ? O19 PE8 602 A 1 HETATM 20 C C20 PE8 . . . F 5 46.64 -9.561 -27.632 1 43.1 ? C20 PE8 602 A 1 HETATM 21 C C21 PE8 . . . F 5 47.399 -10.026 -28.862 1 46.58 ? C21 PE8 602 A 1 HETATM 22 O O22 PE8 . . . F 5 48.081 -8.903 -29.364 1 75 ? O22 PE8 602 A 1 HETATM 23 C C23 PE8 . . . F 5 48.33 -8.908 -30.748 1 54.96 ? C23 PE8 602 A 1 HETATM 24 C C24 PE8 . . . F 5 47.278 -8.053 -31.454 1 59.31 ? C24 PE8 602 A 1 HETATM 25 O O25 PE8 . . . F 5 47.923 -6.997 -32.122 1 60.12 ? O25 PE8 602 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 727 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #