data_7XOY # _model_server_result.job_id buSvAhr1r687FMlTobqk5A _model_server_result.datetime_utc '2025-01-18 10:34:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xoy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7XOY # _exptl.entry_id 7XOY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 336.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XOY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C11 H17 N2 O8 P' _chem_comp.formula_weight 336.235 _chem_comp.id PLS _chem_comp.mon_nstd_flag . _chem_comp.name '[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PYRIDOXYL-SERINE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PLS sing 258 n n N C4A PLS sing 259 n n N HN PLS sing 260 n n CA CB PLS sing 261 n n CA C PLS sing 262 n n CA HA PLS sing 263 n n CB OG PLS sing 264 n n CB HB1 PLS sing 265 n n CB HB2 PLS sing 266 n n OG HOG PLS sing 267 n n C O PLS doub 268 n n C OXT PLS sing 269 n n OXT HXT PLS sing 270 n n N1 C2 PLS doub 271 n y N1 C6 PLS sing 272 n y C2 C2A PLS sing 273 n n C2 C3 PLS sing 274 n y C2A H2A1 PLS sing 275 n n C2A H2A2 PLS sing 276 n n C2A H2A3 PLS sing 277 n n C3 O3 PLS sing 278 n n C3 C4 PLS doub 279 n y O3 HO3 PLS sing 280 n n C4 C4A PLS sing 281 n n C4 C5 PLS sing 282 n y C4A H4A1 PLS sing 283 n n C4A H4A2 PLS sing 284 n n C5 C6 PLS doub 285 n y C5 C5A PLS sing 286 n n C6 H6 PLS sing 287 n n C5A O4P PLS sing 288 n n C5A H5A1 PLS sing 289 n n C5A H5A2 PLS sing 290 n n O4P P PLS sing 291 n n P O1P PLS doub 292 n n P O2P PLS sing 293 n n P O3P PLS sing 294 n n O2P HOP2 PLS sing 295 n n O3P HOP3 PLS sing 296 n n # _atom_sites.entry_id 7XOY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLS B 1 501 501 PLS PS . F 2 PLS A 1 501 501 PLS PS . G 2 PLS C 1 601 601 PLS PS . H 2 PLS D 1 501 501 PLS PS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PLS . . . E 2 139.299 180.7 152.939 1 81.52 ? N PLS 501 B 1 HETATM 2 C CA PLS . . . E 2 140.306 181.699 152.635 1 81.52 ? CA PLS 501 B 1 HETATM 3 C CB PLS . . . E 2 141.257 181.854 153.818 1 81.52 ? CB PLS 501 B 1 HETATM 4 O OG PLS . . . E 2 140.872 183.006 154.514 1 81.52 ? OG PLS 501 B 1 HETATM 5 C C PLS . . . E 2 141.095 181.335 151.378 1 81.52 ? C PLS 501 B 1 HETATM 6 O O PLS . . . E 2 140.746 180.361 150.663 1 81.52 ? O PLS 501 B 1 HETATM 7 O OXT PLS . . . E 2 142.103 182.017 151.057 1 81.52 ? OXT PLS 501 B 1 HETATM 8 N N1 PLS . . . E 2 135.161 181.415 155.477 1 81.52 ? N1 PLS 501 B 1 HETATM 9 C C2 PLS . . . E 2 135.401 180.464 154.6 1 81.52 ? C2 PLS 501 B 1 HETATM 10 C C2A PLS . . . E 2 134.251 179.666 153.996 1 81.52 ? C2A PLS 501 B 1 HETATM 11 C C3 PLS . . . E 2 136.692 180.185 154.217 1 81.52 ? C3 PLS 501 B 1 HETATM 12 O O3 PLS . . . E 2 136.944 179.175 153.281 1 81.52 ? O3 PLS 501 B 1 HETATM 13 C C4 PLS . . . E 2 137.711 180.931 154.784 1 81.52 ? C4 PLS 501 B 1 HETATM 14 C C4A PLS . . . E 2 139.149 180.648 154.381 1 81.52 ? C4A PLS 501 B 1 HETATM 15 C C5 PLS . . . E 2 137.421 181.924 155.708 1 81.52 ? C5 PLS 501 B 1 HETATM 16 C C6 PLS . . . E 2 136.102 182.145 156.038 1 81.52 ? C6 PLS 501 B 1 HETATM 17 C C5A PLS . . . E 2 138.521 182.763 156.355 1 81.52 ? C5A PLS 501 B 1 HETATM 18 O O4P PLS . . . E 2 138.104 184.103 156.437 1 81.52 ? O4P PLS 501 B 1 HETATM 19 P P PLS . . . E 2 138.122 184.786 157.946 1 81.52 ? P PLS 501 B 1 HETATM 20 O O1P PLS . . . E 2 137.79 186.273 157.891 1 81.52 ? O1P PLS 501 B 1 HETATM 21 O O2P PLS . . . E 2 139.482 184.588 158.599 1 81.52 ? O2P PLS 501 B 1 HETATM 22 O O3P PLS . . . E 2 137.053 184.094 158.761 1 81.52 ? O3P PLS 501 B 1 HETATM 23 H HN PLS . . . E 2 138.433 180.957 152.511 1 81.52 ? HN PLS 501 B 1 HETATM 24 H HOG PLS . . . E 2 141.023 182.883 155.437 1 81.52 ? HOG PLS 501 B 1 HETATM 25 H HO3 PLS . . . E 2 137.085 179.558 152.43 1 81.52 ? HO3 PLS 501 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #