data_7XOZ
#
_model_server_result.job_id            rOzQc_oFFfAatMM4NJVcfQ 
_model_server_result.datetime_utc      '2024-12-13 10:48:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xoz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    7XOZ 
#
_exptl.entry_id    7XOZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.33 
_cell.angle_gamma         90 
_cell.entry_id            7XOZ 
_cell.length_a            69.799 
_cell.length_b            81.133 
_cell.length_c            70.713 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XOZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     7XOZ 
_atom_sites.fract_transf_matrix[1][1]    0.014327 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005885 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012325 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015288 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 APR A 1 201 201 APR APR . 
F 3 APR B 1 201 201 APR APR . 
G 4 HOH A 1 301 35 HOH HOH . 
G 4 HOH A 2 302 28 HOH HOH . 
G 4 HOH A 3 303 25 HOH HOH . 
G 4 HOH A 4 304 20 HOH HOH . 
G 4 HOH A 5 305 24 HOH HOH . 
G 4 HOH A 6 306 6 HOH HOH . 
G 4 HOH A 7 307 4 HOH HOH . 
G 4 HOH A 8 308 36 HOH HOH . 
G 4 HOH A 9 309 29 HOH HOH . 
G 4 HOH A 10 310 14 HOH HOH . 
G 4 HOH A 11 311 8 HOH HOH . 
G 4 HOH A 12 312 10 HOH HOH . 
H 4 HOH B 1 301 32 HOH HOH . 
H 4 HOH B 2 302 7 HOH HOH . 
H 4 HOH B 3 303 12 HOH HOH . 
H 4 HOH B 4 304 21 HOH HOH . 
H 4 HOH B 5 305 41 HOH HOH . 
I 4 HOH E 1 201 23 HOH HOH . 
I 4 HOH E 2 202 17 HOH HOH . 
I 4 HOH E 3 203 11 HOH HOH . 
I 4 HOH E 4 204 38 HOH HOH . 
I 4 HOH E 5 205 1 HOH HOH . 
I 4 HOH E 6 206 27 HOH HOH . 
I 4 HOH E 7 207 34 HOH HOH . 
I 4 HOH E 8 208 15 HOH HOH . 
I 4 HOH E 9 209 2 HOH HOH . 
I 4 HOH E 10 210 40 HOH HOH . 
I 4 HOH E 11 211 18 HOH HOH . 
J 4 HOH F 1 201 39 HOH HOH . 
J 4 HOH F 2 202 31 HOH HOH . 
J 4 HOH F 3 203 33 HOH HOH . 
J 4 HOH F 4 204 16 HOH HOH . 
J 4 HOH F 5 205 9 HOH HOH . 
J 4 HOH F 6 206 37 HOH HOH . 
J 4 HOH F 7 207 13 HOH HOH . 
J 4 HOH F 8 208 22 HOH HOH . 
J 4 HOH F 9 209 5 HOH HOH . 
J 4 HOH F 10 210 19 HOH HOH . 
J 4 HOH F 11 211 26 HOH HOH . 
J 4 HOH F 12 212 30 HOH HOH . 
J 4 HOH F 13 213 3 HOH HOH . 
J 4 HOH F 14 214 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . E 3 -23.731 3.166 59.509 1 44.35 ? N1 APR 201 A 1 
HETATM 2 C C2 APR . . . E 3 -22.474 3.272 59.054 1 40.2 ? C2 APR 201 A 1 
HETATM 3 N N3 APR . . . E 3 -21.83 2.522 58.164 1 40.43 ? N3 APR 201 A 1 
HETATM 4 C C4 APR . . . E 3 -22.639 1.549 57.707 1 46.19 ? C4 APR 201 A 1 
HETATM 5 C C5 APR . . . E 3 -23.944 1.313 58.077 1 42.82 ? C5 APR 201 A 1 
HETATM 6 C C6 APR . . . E 3 -24.517 2.166 59.04 1 42.75 ? C6 APR 201 A 1 
HETATM 7 N N6 APR . . . E 3 -25.758 2.045 59.5 1 42.37 ? N6 APR 201 A 1 
HETATM 8 N N7 APR . . . E 3 -24.457 0.224 57.384 1 39.95 ? N7 APR 201 A 1 
HETATM 9 C C8 APR . . . E 3 -23.468 -0.163 56.609 1 43.63 ? C8 APR 201 A 1 
HETATM 10 N N9 APR . . . E 3 -22.324 0.604 56.764 1 45.82 ? N9 APR 201 A 1 
HETATM 11 C C1' APR . . . E 3 -21.007 0.391 56.104 1 45.28 ? C1' APR 201 A 1 
HETATM 12 C C2' APR . . . E 3 -20.164 -0.766 56.658 1 49.3 ? C2' APR 201 A 1 
HETATM 13 O O2' APR . . . E 3 -18.907 -0.152 56.887 1 52.53 ? O2' APR 201 A 1 
HETATM 14 C C3' APR . . . E 3 -20.143 -1.819 55.554 1 50.27 ? C3' APR 201 A 1 
HETATM 15 O O3' APR . . . E 3 -18.923 -2.548 55.564 1 59.44 ? O3' APR 201 A 1 
HETATM 16 O O4' APR . . . E 3 -21.261 0.088 54.748 1 46.26 ? O4' APR 201 A 1 
HETATM 17 C C4' APR . . . E 3 -20.384 -0.983 54.306 1 47.08 ? C4' APR 201 A 1 
HETATM 18 C C5' APR . . . E 3 -20.959 -1.69 53.11 1 48.55 ? C5' APR 201 A 1 
HETATM 19 O O5' APR . . . E 3 -20.827 -0.77 52.023 1 47.57 ? O5' APR 201 A 1 
HETATM 20 P PA APR . . . E 3 -20.639 -1.392 50.569 1 53.78 ? PA APR 201 A 1 
HETATM 21 O O1A APR . . . E 3 -19.573 -2.433 50.597 1 47.64 ? O1A APR 201 A 1 
HETATM 22 O O2A APR . . . E 3 -20.57 -0.298 49.56 1 58.82 ? O2A APR 201 A 1 
HETATM 23 O O3A APR . . . E 3 -22.056 -2.125 50.454 1 52.83 ? O3A APR 201 A 1 
HETATM 24 P PB APR . . . E 3 -23.022 -2.537 49.25 1 44.77 ? PB APR 201 A 1 
HETATM 25 O O1B APR . . . E 3 -23.87 -3.692 49.676 1 57.4 ? O1B APR 201 A 1 
HETATM 26 O O2B APR . . . E 3 -22.206 -2.69 48.003 1 47.69 ? O2B APR 201 A 1 
HETATM 27 O O5D APR . . . E 3 -23.941 -1.239 49.183 1 41.8 ? O5D APR 201 A 1 
HETATM 28 C C5D APR . . . E 3 -23.877 -0.483 47.97 1 48.21 ? C5D APR 201 A 1 
HETATM 29 O O4D APR . . . E 3 -24.942 1.607 48.586 1 45.33 ? O4D APR 201 A 1 
HETATM 30 O O1D APR . . . E 3 -25.308 3.856 48.241 1 45.79 ? O1D APR 201 A 1 
HETATM 31 C C1D APR . . . E 3 -25.73 2.591 47.933 1 44.22 ? C1D APR 201 A 1 
HETATM 32 O O2D APR . . . E 3 -26.46 2.843 45.546 1 59.47 ? O2D APR 201 A 1 
HETATM 33 C C2D APR . . . E 3 -25.501 2.333 46.443 1 47.57 ? C2D APR 201 A 1 
HETATM 34 O O3D APR . . . E 3 -26.692 0.214 46.056 1 50.08 ? O3D APR 201 A 1 
HETATM 35 C C3D APR . . . E 3 -25.446 0.808 46.396 1 46.71 ? C3D APR 201 A 1 
HETATM 36 C C4D APR . . . E 3 -25.105 0.387 47.838 1 48.45 ? C4D APR 201 A 1 
HETATM 37 H H2 APR . . . E 3 -21.957 4.008 59.43 1 48.28 ? H2 APR 201 A 1 
HETATM 38 H H61 APR . . . E 3 -26.064 2.624 60.115 1 50.88 ? H61 APR 201 A 1 
HETATM 39 H H62 APR . . . E 3 -26.284 1.384 59.192 1 50.88 ? H62 APR 201 A 1 
HETATM 40 H H8 APR . . . E 3 -23.546 -0.914 55.993 1 52.4 ? H8 APR 201 A 1 
HETATM 41 H "H'1" APR . . . E 3 -20.468 1.216 56.189 1 54.37 ? "H'1" APR 201 A 1 
HETATM 42 H "H'2" APR . . . E 3 -20.568 -1.231 57.432 1 59.2 ? "H'2" APR 201 A 1 
HETATM 43 H "HO'2" APR . . . E 3 -18.341 -0.744 57.067 1 63.07 ? "HO'2" APR 201 A 1 
HETATM 44 H "H'3" APR . . . E 3 -20.889 -2.463 55.636 1 60.36 ? "H'3" APR 201 A 1 
HETATM 45 H "HO'3" APR . . . E 3 -18.846 -2.933 56.305 1 71.37 ? "HO'3" APR 201 A 1 
HETATM 46 H "H'4" APR . . . E 3 -19.532 -0.583 54.001 1 56.53 ? "H'4" APR 201 A 1 
HETATM 47 H "H5'1" APR . . . E 3 -20.461 -2.525 52.927 1 58.3 ? "H5'1" APR 201 A 1 
HETATM 48 H "H5'2" APR . . . E 3 -21.909 -1.919 53.264 1 58.3 ? "H5'2" APR 201 A 1 
HETATM 49 H H5R1 APR . . . E 3 -23.824 -1.098 47.196 1 57.89 ? H5R1 APR 201 A 1 
HETATM 50 H H5R2 APR . . . E 3 -23.068 0.086 47.974 1 57.89 ? H5R2 APR 201 A 1 
HETATM 51 H HOR1 APR . . . E 3 -25.372 3.984 49.068 1 54.98 ? HOR1 APR 201 A 1 
HETATM 52 H "HR'1" APR . . . E 3 -26.671 2.476 48.213 1 53.1 ? "HR'1" APR 201 A 1 
HETATM 53 H HOR2 APR . . . E 3 -26.511 3.676 45.623 1 71.4 ? HOR2 APR 201 A 1 
HETATM 54 H "HR'2" APR . . . E 3 -24.645 2.746 46.171 1 57.12 ? "HR'2" APR 201 A 1 
HETATM 55 H HOR3 APR . . . E 3 -26.742 0.151 45.22 1 60.14 ? HOR3 APR 201 A 1 
HETATM 56 H "HR'3" APR . . . E 3 -24.723 0.565 45.767 1 56.09 ? "HR'3" APR 201 A 1 
HETATM 57 H "HR'4" APR . . . E 3 -25.87 -0.096 48.239 1 58.18 ? "HR'4" APR 201 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           364 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           57 
#