data_7XOZ
#
_model_server_result.job_id            rm4JhM-ptgna9-76dOoqEw 
_model_server_result.datetime_utc      '2024-12-13 10:42:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xoz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    7XOZ 
#
_exptl.entry_id    7XOZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.33 
_cell.angle_gamma         90 
_cell.entry_id            7XOZ 
_cell.length_a            69.799 
_cell.length_b            81.133 
_cell.length_c            70.713 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XOZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     7XOZ 
_atom_sites.fract_transf_matrix[1][1]    0.014327 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005885 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012325 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015288 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 APR A 1 201 201 APR APR . 
F 3 APR B 1 201 201 APR APR . 
G 4 HOH A 1 301 35 HOH HOH . 
G 4 HOH A 2 302 28 HOH HOH . 
G 4 HOH A 3 303 25 HOH HOH . 
G 4 HOH A 4 304 20 HOH HOH . 
G 4 HOH A 5 305 24 HOH HOH . 
G 4 HOH A 6 306 6 HOH HOH . 
G 4 HOH A 7 307 4 HOH HOH . 
G 4 HOH A 8 308 36 HOH HOH . 
G 4 HOH A 9 309 29 HOH HOH . 
G 4 HOH A 10 310 14 HOH HOH . 
G 4 HOH A 11 311 8 HOH HOH . 
G 4 HOH A 12 312 10 HOH HOH . 
H 4 HOH B 1 301 32 HOH HOH . 
H 4 HOH B 2 302 7 HOH HOH . 
H 4 HOH B 3 303 12 HOH HOH . 
H 4 HOH B 4 304 21 HOH HOH . 
H 4 HOH B 5 305 41 HOH HOH . 
I 4 HOH E 1 201 23 HOH HOH . 
I 4 HOH E 2 202 17 HOH HOH . 
I 4 HOH E 3 203 11 HOH HOH . 
I 4 HOH E 4 204 38 HOH HOH . 
I 4 HOH E 5 205 1 HOH HOH . 
I 4 HOH E 6 206 27 HOH HOH . 
I 4 HOH E 7 207 34 HOH HOH . 
I 4 HOH E 8 208 15 HOH HOH . 
I 4 HOH E 9 209 2 HOH HOH . 
I 4 HOH E 10 210 40 HOH HOH . 
I 4 HOH E 11 211 18 HOH HOH . 
J 4 HOH F 1 201 39 HOH HOH . 
J 4 HOH F 2 202 31 HOH HOH . 
J 4 HOH F 3 203 33 HOH HOH . 
J 4 HOH F 4 204 16 HOH HOH . 
J 4 HOH F 5 205 9 HOH HOH . 
J 4 HOH F 6 206 37 HOH HOH . 
J 4 HOH F 7 207 13 HOH HOH . 
J 4 HOH F 8 208 22 HOH HOH . 
J 4 HOH F 9 209 5 HOH HOH . 
J 4 HOH F 10 210 19 HOH HOH . 
J 4 HOH F 11 211 26 HOH HOH . 
J 4 HOH F 12 212 30 HOH HOH . 
J 4 HOH F 13 213 3 HOH HOH . 
J 4 HOH F 14 214 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . F 3 -35.534 0.517 -11.189 1 67.75 ? N1 APR 201 B 1 
HETATM 2 C C2 APR . . . F 3 -36.228 -0.247 -10.334 1 57.87 ? C2 APR 201 B 1 
HETATM 3 N N3 APR . . . F 3 -37.453 -0.076 -9.853 1 55.79 ? N3 APR 201 B 1 
HETATM 4 C C4 APR . . . F 3 -37.998 1.044 -10.348 1 52.63 ? C4 APR 201 B 1 
HETATM 5 C C5 APR . . . F 3 -37.418 1.926 -11.23 1 57.41 ? C5 APR 201 B 1 
HETATM 6 C C6 APR . . . F 3 -36.111 1.642 -11.671 1 59.74 ? C6 APR 201 B 1 
HETATM 7 N N6 APR . . . F 3 -35.437 2.411 -12.522 1 55.12 ? N6 APR 201 B 1 
HETATM 8 N N7 APR . . . F 3 -38.286 2.968 -11.525 1 55.93 ? N7 APR 201 B 1 
HETATM 9 C C8 APR . . . F 3 -39.361 2.697 -10.817 1 58.06 ? C8 APR 201 B 1 
HETATM 10 N N9 APR . . . F 3 -39.238 1.535 -10.056 1 57.81 ? N9 APR 201 B 1 
HETATM 11 C C1' APR . . . F 3 -40.261 0.917 -9.142 1 57.25 ? C1' APR 201 B 1 
HETATM 12 C C2' APR . . . F 3 -40.776 -0.377 -9.775 1 57.33 ? C2' APR 201 B 1 
HETATM 13 O O2' APR . . . F 3 -42.183 -0.372 -9.857 1 61.46 ? O2' APR 201 B 1 
HETATM 14 C C3' APR . . . F 3 -40.316 -1.474 -8.796 1 56.51 ? C3' APR 201 B 1 
HETATM 15 O O3' APR . . . F 3 -41.185 -2.597 -8.748 1 62.46 ? O3' APR 201 B 1 
HETATM 16 O O4' APR . . . F 3 -39.763 0.558 -7.876 1 56.21 ? O4' APR 201 B 1 
HETATM 17 C C4' APR . . . F 3 -40.298 -0.731 -7.464 1 52.12 ? C4' APR 201 B 1 
HETATM 18 C C5' APR . . . F 3 -39.502 -1.233 -6.292 1 61.04 ? C5' APR 201 B 1 
HETATM 19 O O5' APR . . . F 3 -40.077 -0.489 -5.182 1 57.6 ? O5' APR 201 B 1 
HETATM 20 P PA APR . . . F 3 -40.205 -1.221 -3.771 1 60.67 ? PA APR 201 B 1 
HETATM 21 O O1A APR . . . F 3 -40.707 -2.612 -3.97 1 52.48 ? O1A APR 201 B 1 
HETATM 22 O O2A APR . . . F 3 -41.002 -0.354 -2.865 1 58.58 ? O2A APR 201 B 1 
HETATM 23 O O3A APR . . . F 3 -38.684 -1.237 -3.253 1 55.14 ? O3A APR 201 B 1 
HETATM 24 P PB APR . . . F 3 -37.843 -2.281 -2.372 1 47.4 ? PB APR 201 B 1 
HETATM 25 O O1B APR . . . F 3 -37.211 -3.247 -3.326 1 59.56 ? O1B APR 201 B 1 
HETATM 26 O O2B APR . . . F 3 -38.698 -2.843 -1.28 1 53.48 ? O2B APR 201 B 1 
HETATM 27 O O5D APR . . . F 3 -36.723 -1.337 -1.726 1 53.88 ? O5D APR 201 B 1 
HETATM 28 C C5D APR . . . F 3 -36.508 -0.073 -2.375 1 53.41 ? C5D APR 201 B 1 
HETATM 29 O O4D APR . . . F 3 -35.488 2.072 -2.194 1 55.7 ? O4D APR 201 B 1 
HETATM 30 O O1D APR . . . F 3 -35.595 4.244 -1.463 1 53.82 ? O1D APR 201 B 1 
HETATM 31 C C1D APR . . . F 3 -35.093 2.994 -1.212 1 52.74 ? C1D APR 201 B 1 
HETATM 32 O O2D APR . . . F 3 -35.103 2.865 1.256 1 65 ? O2D APR 201 B 1 
HETATM 33 C C2D APR . . . F 3 -35.723 2.447 0.063 1 54.14 ? C2D APR 201 B 1 
HETATM 34 O O3D APR . . . F 3 -34.598 0.359 0.573 1 52.56 ? O3D APR 201 B 1 
HETATM 35 C C3D APR . . . F 3 -35.704 0.937 -0.108 1 54.39 ? C3D APR 201 B 1 
HETATM 36 C C4D APR . . . F 3 -35.492 0.747 -1.617 1 54.23 ? C4D APR 201 B 1 
HETATM 37 H H2 APR . . . F 3 -35.764 -1.045 -10.019 1 69.48 ? H2 APR 201 B 1 
HETATM 38 H H61 APR . . . F 3 -34.605 2.178 -12.77 1 66.18 ? H61 APR 201 B 1 
HETATM 39 H H62 APR . . . F 3 -35.818 3.159 -12.844 1 66.18 ? H62 APR 201 B 1 
HETATM 40 H H8 APR . . . F 3 -40.156 3.261 -10.833 1 69.71 ? H8 APR 201 B 1 
HETATM 41 H "H'1" APR . . . F 3 -40.961 1.588 -8.946 1 68.74 ? "H'1" APR 201 B 1 
HETATM 42 H "H'2" APR . . . F 3 -40.335 -0.488 -10.653 1 68.84 ? "H'2" APR 201 B 1 
HETATM 43 H "HO'2" APR . . . F 3 -42.43 0.298 -10.297 1 73.79 ? "HO'2" APR 201 B 1 
HETATM 44 H "H'3" APR . . . F 3 -39.41 -1.779 -9.05 1 67.86 ? "H'3" APR 201 B 1 
HETATM 45 H "HO'3" APR . . . F 3 -41.258 -2.915 -9.521 1 75 ? "HO'3" APR 201 B 1 
HETATM 46 H "H'4" APR . . . F 3 -41.222 -0.701 -7.113 1 62.59 ? "H'4" APR 201 B 1 
HETATM 47 H "H5'1" APR . . . F 3 -39.613 -2.208 -6.173 1 73.29 ? "H5'1" APR 201 B 1 
HETATM 48 H "H5'2" APR . . . F 3 -38.539 -1.037 -6.401 1 73.29 ? "H5'2" APR 201 B 1 
HETATM 49 H H5R1 APR . . . F 3 -37.362 0.425 -2.421 1 64.13 ? H5R1 APR 201 B 1 
HETATM 50 H H5R2 APR . . . F 3 -36.184 -0.225 -3.297 1 64.13 ? H5R2 APR 201 B 1 
HETATM 51 H HOR1 APR . . . F 3 -35.373 4.491 -2.234 1 64.62 ? HOR1 APR 201 B 1 
HETATM 52 H "HR'1" APR . . . F 3 -34.105 3.035 -1.188 1 63.33 ? "HR'1" APR 201 B 1 
HETATM 53 H HOR2 APR . . . F 3 -35.095 3.703 1.297 1 78.04 ? HOR2 APR 201 B 1 
HETATM 54 H "HR'2" APR . . . F 3 -36.666 2.741 0.108 1 65.01 ? "HR'2" APR 201 B 1 
HETATM 55 H HOR3 APR . . . F 3 -34.709 0.457 1.398 1 63.12 ? HOR3 APR 201 B 1 
HETATM 56 H "HR'3" APR . . . F 3 -36.575 0.565 0.179 1 65.31 ? "HR'3" APR 201 B 1 
HETATM 57 H "HR'4" APR . . . F 3 -34.608 0.32 -1.729 1 65.11 ? "HR'4" APR 201 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           57 
#