data_7XP1 # _model_server_result.job_id foDHeJxideHnWfCC1XpvQw _model_server_result.datetime_utc '2025-08-31 08:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7XP1 # _exptl.entry_id 7XP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.15 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ALPHA-METHYLISOCITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XP1 _cell.length_a 74.021 _cell.length_b 74.021 _cell.length_c 186.543 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 133 A HIS 147 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A NE2 HIS 178 A HIS 192 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A NE2 HIS 200 A HIS 214 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C O2 MIC . A MIC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C O7 MIC . A MIC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C O6 MIC . A MIC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'C7 H10 O7' _chem_comp.formula_weight 206.15 _chem_comp.id MIC _chem_comp.mon_nstd_flag . _chem_comp.name 'ALPHA-METHYLISOCITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MIC doub 250 n n C1 O2 MIC sing 251 n n C1 C2 MIC sing 252 n n O2 HO2 MIC sing 253 n n C2 CM2 MIC sing 254 n n C2 O7 MIC sing 255 n n C2 C3 MIC sing 256 n n CM2 HM21 MIC sing 257 n n CM2 HM22 MIC sing 258 n n CM2 HM23 MIC sing 259 n n O7 HO7 MIC sing 260 n n C3 C4 MIC sing 261 n n C3 C6 MIC sing 262 n n C3 H3 MIC sing 263 n n C4 C5 MIC sing 264 n n C4 H41 MIC sing 265 n n C4 H42 MIC sing 266 n n C5 O3 MIC doub 267 n n C5 O4 MIC sing 268 n n O4 HO4 MIC sing 269 n n C6 O5 MIC doub 270 n n C6 O6 MIC sing 271 n n O6 HO6 MIC sing 272 n n # _atom_sites.entry_id 7XP1 _atom_sites.fract_transf_matrix[1][1] 0.01351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005361 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 MIC A 1 302 1 MIC MIC . D 4 SO4 A 1 303 1 SO4 SO4 . E 4 SO4 A 1 304 2 SO4 SO4 . F 4 SO4 A 1 305 3 SO4 SO4 . G 5 GOL A 1 306 1 GOL GOL . H 6 HOH A 1 401 2 HOH HOH . H 6 HOH A 2 402 4 HOH HOH . H 6 HOH A 3 403 1 HOH HOH . H 6 HOH A 4 404 3 HOH HOH . H 6 HOH A 5 405 6 HOH HOH . H 6 HOH A 6 406 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MIC . . . C 3 9.917 16.008 -17.527 1 51.42 ? C1 MIC 302 A 1 HETATM 2 O O1 MIC . . . C 3 9.926 16.367 -18.725 1 52.22 ? O1 MIC 302 A 1 HETATM 3 O O2 MIC . . . C 3 10.474 14.959 -17.131 1 23.73 ? O2 MIC 302 A 1 HETATM 4 C C2 MIC . . . C 3 9.226 16.885 -16.51 1 45.26 ? C2 MIC 302 A 1 HETATM 5 C CM2 MIC . . . C 3 9.766 18.3 -16.663 1 51.11 ? CM2 MIC 302 A 1 HETATM 6 O O7 MIC . . . C 3 9.531 16.429 -15.189 1 54.1 ? O7 MIC 302 A 1 HETATM 7 C C3 MIC . . . C 3 7.705 16.917 -16.673 1 39.49 ? C3 MIC 302 A 1 HETATM 8 C C4 MIC . . . C 3 7.101 17.575 -15.436 1 40.6 ? C4 MIC 302 A 1 HETATM 9 C C5 MIC . . . C 3 5.936 18.458 -15.811 1 57.99 ? C5 MIC 302 A 1 HETATM 10 O O3 MIC . . . C 3 5.621 18.562 -17.015 1 71.64 ? O3 MIC 302 A 1 HETATM 11 O O4 MIC . . . C 3 5.328 19.053 -14.895 1 52.08 ? O4 MIC 302 A 1 HETATM 12 C C6 MIC . . . C 3 7.072 15.56 -16.86 1 46.63 ? C6 MIC 302 A 1 HETATM 13 O O5 MIC . . . C 3 5.965 15.501 -17.441 1 48.19 ? O5 MIC 302 A 1 HETATM 14 O O6 MIC . . . C 3 7.64 14.537 -16.422 1 34.31 ? O6 MIC 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #