data_7XP6
#
_model_server_result.job_id            UAJeKn74a6NVj0rPVZpo6Q 
_model_server_result.datetime_utc      '2024-12-26 12:34:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xp6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    7XP6 
#
_exptl.entry_id    7XP6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              334.412 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            STRYCHNINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XP6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 23 N CYS 23 1_555 D SG CYS 97 N CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 D SG CYS 100 N CYS 100 1_555 D SG CYS 108 N CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C21 H22 N2 O2' 
_chem_comp.formula_weight    334.412 
_chem_comp.id                SY9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              STRYCHNINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAV CAU SY9 sing 288 n n 
CAV CAG SY9 sing 289 n n 
CAV NAY SY9 sing 290 n n 
CAU CAT SY9 sing 291 n n 
CAT CAN SY9 sing 292 n n 
CAT CAR SY9 sing 293 n n 
CAN CAK SY9 sing 294 n n 
CAN CAM SY9 sing 295 n n 
CAK NAH SY9 sing 296 n n 
CAK CAG SY9 sing 297 n n 
NAH CAA SY9 sing 298 n n 
NAH CAI SY9 sing 299 n n 
CAA CAF SY9 sing 300 n y 
CAA CAB SY9 doub 301 n y 
CAF CAE SY9 doub 302 n y 
CAE CAD SY9 sing 303 n y 
CAD CAC SY9 doub 304 n y 
CAC CAB SY9 sing 305 n y 
CAB CAG SY9 sing 306 n n 
CAG CAW SY9 sing 307 n n 
CAW CAX SY9 sing 308 n n 
CAX NAY SY9 sing 309 n n 
NAY CAS SY9 sing 310 n n 
CAS CAR SY9 sing 311 n n 
CAR CAQ SY9 doub 312 n n 
CAQ CAP SY9 sing 313 n n 
CAP OAO SY9 sing 314 n n 
OAO CAM SY9 sing 315 n n 
CAM CAL SY9 sing 316 n n 
CAL CAI SY9 sing 317 n n 
CAI OAJ SY9 doub 318 n n 
CAV HAV SY9 sing 319 n n 
CAU HAU1 SY9 sing 320 n n 
CAU HAU2 SY9 sing 321 n n 
CAT HAT SY9 sing 322 n n 
CAN HAN SY9 sing 323 n n 
CAK HAK SY9 sing 324 n n 
CAM HAM SY9 sing 325 n n 
CAF HAF SY9 sing 326 n n 
CAE HAE SY9 sing 327 n n 
CAD HAD SY9 sing 328 n n 
CAC HAC SY9 sing 329 n n 
CAW HAW1 SY9 sing 330 n n 
CAW HAW2 SY9 sing 331 n n 
CAX HAX1 SY9 sing 332 n n 
CAX HAX2 SY9 sing 333 n n 
CAS HAS1 SY9 sing 334 n n 
CAS HAS2 SY9 sing 335 n n 
CAQ HAQ SY9 sing 336 n n 
CAP HAP1 SY9 sing 337 n n 
CAP HAP2 SY9 sing 338 n n 
CAL HAL1 SY9 sing 339 n n 
CAL HAL2 SY9 sing 340 n n 
#
_atom_sites.entry_id                     7XP6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           SY9 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       SY9 
_pdbx_nonpoly_scheme.auth_mon_id      SY9 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAV SY9 . . . F 6 141.3 138.038 103.895 1 81.7 ? CAV SY9 501 R 1 
HETATM 2 C CAU SY9 . . . F 6 139.975 138.028 104.64 1 81.7 ? CAU SY9 501 R 1 
HETATM 3 C CAT SY9 . . . F 6 138.836 138.203 103.618 1 81.7 ? CAT SY9 501 R 1 
HETATM 4 C CAN SY9 . . . F 6 138.821 136.911 102.795 1 81.7 ? CAN SY9 501 R 1 
HETATM 5 C CAK SY9 . . . F 6 140.107 136.775 101.984 1 81.7 ? CAK SY9 501 R 1 
HETATM 6 N NAH SY9 . . . F 6 140.182 135.366 101.52 1 81.7 ? NAH SY9 501 R 1 
HETATM 7 C CAA SY9 . . . F 6 141.005 134.65 102.423 1 81.7 ? CAA SY9 501 R 1 
HETATM 8 C CAF SY9 . . . F 6 141.111 133.272 102.61 1 81.7 ? CAF SY9 501 R 1 
HETATM 9 C CAE SY9 . . . F 6 142.002 132.826 103.583 1 81.7 ? CAE SY9 501 R 1 
HETATM 10 C CAD SY9 . . . F 6 142.743 133.711 104.353 1 81.7 ? CAD SY9 501 R 1 
HETATM 11 C CAC SY9 . . . F 6 142.613 135.083 104.161 1 81.7 ? CAC SY9 501 R 1 
HETATM 12 C CAB SY9 . . . F 6 141.731 135.544 103.196 1 81.7 ? CAB SY9 501 R 1 
HETATM 13 C CAG SY9 . . . F 6 141.423 136.966 102.79 1 81.7 ? CAG SY9 501 R 1 
HETATM 14 C CAW SY9 . . . F 6 142.524 137.607 101.93 1 81.7 ? CAW SY9 501 R 1 
HETATM 15 C CAX SY9 . . . F 6 141.996 139.032 101.818 1 81.7 ? CAX SY9 501 R 1 
HETATM 16 N NAY SY9 . . . F 6 141.523 139.343 103.188 1 81.7 ? NAY SY9 501 R 1 
HETATM 17 C CAS SY9 . . . F 6 140.328 140.214 103.185 1 81.7 ? CAS SY9 501 R 1 
HETATM 18 C CAR SY9 . . . F 6 139.105 139.438 102.768 1 81.7 ? CAR SY9 501 R 1 
HETATM 19 C CAQ SY9 . . . F 6 138.327 139.797 101.749 1 81.7 ? CAQ SY9 501 R 1 
HETATM 20 C CAP SY9 . . . F 6 137.715 138.819 100.783 1 81.7 ? CAP SY9 501 R 1 
HETATM 21 O OAO SY9 . . . F 6 136.913 137.82 101.437 1 81.7 ? OAO SY9 501 R 1 
HETATM 22 C CAM SY9 . . . F 6 137.604 136.65 101.896 1 81.7 ? CAM SY9 501 R 1 
HETATM 23 C CAL SY9 . . . F 6 138.01 135.872 100.625 1 81.7 ? CAL SY9 501 R 1 
HETATM 24 C CAI SY9 . . . F 6 139.128 134.874 100.81 1 81.7 ? CAI SY9 501 R 1 
HETATM 25 O OAJ SY9 . . . F 6 139.074 133.724 100.379 1 81.7 ? OAJ SY9 501 R 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           25 
#