data_7XPP # _model_server_result.job_id jcUes9GlMiGT5Z4tPQFWPA _model_server_result.datetime_utc '2025-09-09 01:00:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7XPP # _exptl.entry_id 7XPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.24 _cell.angle_gamma 90 _cell.entry_id 7XPP _cell.length_a 163.04 _cell.length_b 88.149 _cell.length_c 82.431 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 7XPP _atom_sites.fract_transf_matrix[1][1] 0.006133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD B 1 401 402 NAD NAD . D 2 NAD A 1 401 401 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 31.492 -15.262 3.29 1 91.38 ? PA NAD 401 B 1 HETATM 2 O O1A NAD . . . C 2 31.548 -14.158 2.265 1 86.38 ? O1A NAD 401 B 1 HETATM 3 O O2A NAD . . . C 2 32.142 -16.593 3.011 1 74.09 ? O2A NAD 401 B 1 HETATM 4 O O5B NAD . . . C 2 29.951 -15.521 3.644 1 90.84 ? O5B NAD 401 B 1 HETATM 5 C C5B NAD . . . C 2 29.041 -14.435 3.791 1 80.75 ? C5B NAD 401 B 1 HETATM 6 C C4B NAD . . . C 2 28.078 -14.758 4.919 1 101.94 ? C4B NAD 401 B 1 HETATM 7 O O4B NAD . . . C 2 27.521 -16.035 4.652 1 109.1 ? O4B NAD 401 B 1 HETATM 8 C C3B NAD . . . C 2 28.74 -14.82 6.295 1 96.92 ? C3B NAD 401 B 1 HETATM 9 O O3B NAD . . . C 2 28.061 -14.041 7.273 1 87.27 ? O3B NAD 401 B 1 HETATM 10 C C2B NAD . . . C 2 28.631 -16.257 6.712 1 98.05 ? C2B NAD 401 B 1 HETATM 11 O O2B NAD . . . C 2 28.385 -16.355 8.112 1 95.5 ? O2B NAD 401 B 1 HETATM 12 C C1B NAD . . . C 2 27.466 -16.762 5.866 1 101.69 ? C1B NAD 401 B 1 HETATM 13 N N9A NAD . . . C 2 27.494 -18.211 5.569 1 111.67 ? N9A NAD 401 B 1 HETATM 14 C C8A NAD . . . C 2 26.435 -19.014 5.733 1 117.07 ? C8A NAD 401 B 1 HETATM 15 N N7A NAD . . . C 2 26.734 -20.288 5.389 1 109.24 ? N7A NAD 401 B 1 HETATM 16 C C5A NAD . . . C 2 28.012 -20.301 4.986 1 105.15 ? C5A NAD 401 B 1 HETATM 17 C C6A NAD . . . C 2 28.958 -21.313 4.487 1 115.72 ? C6A NAD 401 B 1 HETATM 18 N N6A NAD . . . C 2 28.585 -22.598 4.351 1 122.87 ? N6A NAD 401 B 1 HETATM 19 N N1A NAD . . . C 2 30.211 -20.921 4.171 1 102.95 ? N1A NAD 401 B 1 HETATM 20 C C2A NAD . . . C 2 30.608 -19.646 4.297 1 107.99 ? C2A NAD 401 B 1 HETATM 21 N N3A NAD . . . C 2 29.794 -18.679 4.741 1 124.65 ? N3A NAD 401 B 1 HETATM 22 C C4A NAD . . . C 2 28.512 -18.931 5.096 1 114.51 ? C4A NAD 401 B 1 HETATM 23 O O3 NAD . . . C 2 32.041 -14.722 4.696 1 87.79 ? O3 NAD 401 B 1 HETATM 24 P PN NAD . . . C 2 33.235 -13.658 4.786 1 90.46 ? PN NAD 401 B 1 HETATM 25 O O1N NAD . . . C 2 34.212 -13.938 3.673 1 95.81 ? O1N NAD 401 B 1 HETATM 26 O O2N NAD . . . C 2 33.738 -13.689 6.206 1 96.01 ? O2N NAD 401 B 1 HETATM 27 O O5D NAD . . . C 2 32.489 -12.266 4.463 1 86.5 ? O5D NAD 401 B 1 HETATM 28 C C5D NAD . . . C 2 31.631 -11.563 5.365 1 99.47 ? C5D NAD 401 B 1 HETATM 29 C C4D NAD . . . C 2 32.242 -10.181 5.561 1 88.77 ? C4D NAD 401 B 1 HETATM 30 O O4D NAD . . . C 2 31.414 -9.303 6.323 1 97.56 ? O4D NAD 401 B 1 HETATM 31 C C3D NAD . . . C 2 33.577 -10.197 6.303 1 98.59 ? C3D NAD 401 B 1 HETATM 32 O O3D NAD . . . C 2 34.641 -9.933 5.384 1 97.74 ? O3D NAD 401 B 1 HETATM 33 C C2D NAD . . . C 2 33.498 -9.115 7.355 1 109.77 ? C2D NAD 401 B 1 HETATM 34 O O2D NAD . . . C 2 34.696 -8.34 7.348 1 107.15 ? O2D NAD 401 B 1 HETATM 35 C C1D NAD . . . C 2 32.328 -8.319 6.815 1 108.27 ? C1D NAD 401 B 1 HETATM 36 N N1N NAD . . . C 2 31.702 -7.243 7.609 1 102.72 ? N1N NAD 401 B 1 HETATM 37 C C2N NAD . . . C 2 31.623 -7.232 8.944 1 96.14 ? C2N NAD 401 B 1 HETATM 38 C C3N NAD . . . C 2 31.022 -6.156 9.573 1 112.79 ? C3N NAD 401 B 1 HETATM 39 C C7N NAD . . . C 2 30.906 -6.087 11.047 1 119.94 ? C7N NAD 401 B 1 HETATM 40 O O7N NAD . . . C 2 29.796 -6.088 11.552 1 109.74 ? O7N NAD 401 B 1 HETATM 41 N N7N NAD . . . C 2 32.03 -6.006 11.748 1 129.59 ? N7N NAD 401 B 1 HETATM 42 C C4N NAD . . . C 2 30.515 -5.102 8.857 1 104.42 ? C4N NAD 401 B 1 HETATM 43 C C5N NAD . . . C 2 30.602 -5.124 7.495 1 102.78 ? C5N NAD 401 B 1 HETATM 44 C C6N NAD . . . C 2 31.208 -6.209 6.899 1 108.22 ? C6N NAD 401 B 1 HETATM 45 H H51A NAD . . . C 2 28.484 -14.314 2.862 1 96.7 ? H51A NAD 401 B 1 HETATM 46 H H52A NAD . . . C 2 29.559 -13.5 4.001 1 96.7 ? H52A NAD 401 B 1 HETATM 47 H H4B NAD . . . C 2 27.265 -14.026 4.928 1 122.14 ? H4B NAD 401 B 1 HETATM 48 H H3B NAD . . . C 2 29.796 -14.526 6.247 1 116.11 ? H3B NAD 401 B 1 HETATM 49 H HO3A NAD . . . C 2 28.441 -13.154 7.273 1 104.53 ? HO3A NAD 401 B 1 HETATM 50 H H2B NAD . . . C 2 29.582 -16.733 6.461 1 117.46 ? H2B NAD 401 B 1 HETATM 51 H HO2A NAD . . . C 2 28.941 -15.718 8.582 1 114.41 ? HO2A NAD 401 B 1 HETATM 52 H H1B NAD . . . C 2 26.535 -16.505 6.389 1 121.83 ? H1B NAD 401 B 1 HETATM 53 H H8A NAD . . . C 2 25.478 -18.683 6.106 1 140.29 ? H8A NAD 401 B 1 HETATM 54 H H61A NAD . . . C 2 27.646 -22.891 4.586 1 147.25 ? H61A NAD 401 B 1 HETATM 55 H H62A NAD . . . C 2 29.261 -23.26 4.013 1 147.25 ? H62A NAD 401 B 1 HETATM 56 H H2A NAD . . . C 2 31.624 -19.385 4.029 1 129.39 ? H2A NAD 401 B 1 HETATM 57 H H51N NAD . . . C 2 30.647 -11.448 4.91 1 119.17 ? H51N NAD 401 B 1 HETATM 58 H H52N NAD . . . C 2 31.504 -12.091 6.313 1 119.17 ? H52N NAD 401 B 1 HETATM 59 H H4D NAD . . . C 2 32.403 -9.755 4.56 1 106.33 ? H4D NAD 401 B 1 HETATM 60 H H3D NAD . . . C 2 33.722 -11.15 6.819 1 118.11 ? H3D NAD 401 B 1 HETATM 61 H HO3N NAD . . . C 2 34.836 -10.73 4.874 1 117.1 ? HO3N NAD 401 B 1 HETATM 62 H H2D NAD . . . C 2 33.295 -9.579 8.328 1 131.53 ? H2D NAD 401 B 1 HETATM 63 H HO2N NAD . . . C 2 34.628 -7.62 7.991 1 128.39 ? HO2N NAD 401 B 1 HETATM 64 H H1D NAD . . . C 2 32.808 -7.844 5.986 1 129.73 ? H1D NAD 401 B 1 HETATM 65 H H2N NAD . . . C 2 32.01 -8.037 9.552 1 115.17 ? H2N NAD 401 B 1 HETATM 66 H H71N NAD . . . C 2 31.99 -5.954 12.756 1 155.31 ? H71N NAD 401 B 1 HETATM 67 H H72N NAD . . . C 2 32.919 -6.011 11.281 1 155.31 ? H72N NAD 401 B 1 HETATM 68 H H4N NAD . . . C 2 30.054 -4.278 9.359 1 125.11 ? H4N NAD 401 B 1 HETATM 69 H H5N NAD . . . C 2 30.21 -4.306 6.906 1 123.14 ? H5N NAD 401 B 1 HETATM 70 H H6N NAD . . . C 2 31.261 -6.194 5.826 1 129.67 ? H6N NAD 401 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 70 #