data_7XPV
#
_model_server_result.job_id            7oU13jV5j_dR63o6YllKuQ 
_model_server_result.datetime_utc      '2024-11-27 09:36:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    7XPV 
#
_exptl.entry_id    7XPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XPV 
_cell.length_a            98.135 
_cell.length_b            162.67 
_cell.length_c            114.927 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -57.4635 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 130 A ASP 111 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc2 A NE2 HIS 306 A HIS 287 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc3 C O2 GRJ . A GRJ 401 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc4 C O6 GRJ . A GRJ 401 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc5 B OD1 ASP 130 B ASP 111 1_555 F MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc6 B OD2 ASP 130 B ASP 111 1_555 F MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc7 B NE2 HIS 306 B HIS 287 1_555 F MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc8 E O2 GRJ . B GRJ 401 1_555 F MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc9 E O6 GRJ . B GRJ 401 1_555 F MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7XPV 
_atom_sites.fract_transf_matrix[1][1]    0.01019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GRJ A 1 401 401 GRJ LIG . 
D 3 MN A 1 402 1 MN MN . 
E 2 GRJ B 1 401 401 GRJ LIG . 
F 3 MN B 1 402 1 MN MN . 
G 4 HOH A 1 501 242 HOH HOH . 
G 4 HOH A 2 502 177 HOH HOH . 
G 4 HOH A 3 503 168 HOH HOH . 
G 4 HOH A 4 504 21 HOH HOH . 
G 4 HOH A 5 505 142 HOH HOH . 
G 4 HOH A 6 506 212 HOH HOH . 
G 4 HOH A 7 507 221 HOH HOH . 
G 4 HOH A 8 508 123 HOH HOH . 
G 4 HOH A 9 509 217 HOH HOH . 
G 4 HOH A 10 510 218 HOH HOH . 
G 4 HOH A 11 511 198 HOH HOH . 
G 4 HOH A 12 512 112 HOH HOH . 
G 4 HOH A 13 513 216 HOH HOH . 
G 4 HOH A 14 514 56 HOH HOH . 
G 4 HOH A 15 515 138 HOH HOH . 
G 4 HOH A 16 516 64 HOH HOH . 
G 4 HOH A 17 517 102 HOH HOH . 
G 4 HOH A 18 518 94 HOH HOH . 
G 4 HOH A 19 519 49 HOH HOH . 
G 4 HOH A 20 520 238 HOH HOH . 
G 4 HOH A 21 521 60 HOH HOH . 
G 4 HOH A 22 522 176 HOH HOH . 
G 4 HOH A 23 523 159 HOH HOH . 
G 4 HOH A 24 524 122 HOH HOH . 
G 4 HOH A 25 525 215 HOH HOH . 
G 4 HOH A 26 526 126 HOH HOH . 
G 4 HOH A 27 527 161 HOH HOH . 
G 4 HOH A 28 528 208 HOH HOH . 
G 4 HOH A 29 529 121 HOH HOH . 
G 4 HOH A 30 530 206 HOH HOH . 
G 4 HOH A 31 531 186 HOH HOH . 
G 4 HOH A 32 532 47 HOH HOH . 
G 4 HOH A 33 533 124 HOH HOH . 
G 4 HOH A 34 534 182 HOH HOH . 
G 4 HOH A 35 535 115 HOH HOH . 
G 4 HOH A 36 536 8 HOH HOH . 
G 4 HOH A 37 537 172 HOH HOH . 
G 4 HOH A 38 538 80 HOH HOH . 
G 4 HOH A 39 539 105 HOH HOH . 
G 4 HOH A 40 540 69 HOH HOH . 
G 4 HOH A 41 541 152 HOH HOH . 
G 4 HOH A 42 542 151 HOH HOH . 
G 4 HOH A 43 543 157 HOH HOH . 
G 4 HOH A 44 544 201 HOH HOH . 
G 4 HOH A 45 545 132 HOH HOH . 
G 4 HOH A 46 546 26 HOH HOH . 
G 4 HOH A 47 547 184 HOH HOH . 
G 4 HOH A 48 548 85 HOH HOH . 
G 4 HOH A 49 549 134 HOH HOH . 
G 4 HOH A 50 550 72 HOH HOH . 
G 4 HOH A 51 551 78 HOH HOH . 
G 4 HOH A 52 552 183 HOH HOH . 
G 4 HOH A 53 553 48 HOH HOH . 
G 4 HOH A 54 554 23 HOH HOH . 
G 4 HOH A 55 555 158 HOH HOH . 
G 4 HOH A 56 556 140 HOH HOH . 
G 4 HOH A 57 557 6 HOH HOH . 
G 4 HOH A 58 558 40 HOH HOH . 
G 4 HOH A 59 559 19 HOH HOH . 
G 4 HOH A 60 560 43 HOH HOH . 
G 4 HOH A 61 561 131 HOH HOH . 
G 4 HOH A 62 562 167 HOH HOH . 
G 4 HOH A 63 563 41 HOH HOH . 
G 4 HOH A 64 564 232 HOH HOH . 
G 4 HOH A 65 565 30 HOH HOH . 
G 4 HOH A 66 566 88 HOH HOH . 
G 4 HOH A 67 567 170 HOH HOH . 
G 4 HOH A 68 568 163 HOH HOH . 
G 4 HOH A 69 569 113 HOH HOH . 
G 4 HOH A 70 570 25 HOH HOH . 
G 4 HOH A 71 571 136 HOH HOH . 
G 4 HOH A 72 572 149 HOH HOH . 
G 4 HOH A 73 573 17 HOH HOH . 
G 4 HOH A 74 574 116 HOH HOH . 
G 4 HOH A 75 575 100 HOH HOH . 
G 4 HOH A 76 576 50 HOH HOH . 
G 4 HOH A 77 577 173 HOH HOH . 
G 4 HOH A 78 578 146 HOH HOH . 
G 4 HOH A 79 579 135 HOH HOH . 
G 4 HOH A 80 580 58 HOH HOH . 
G 4 HOH A 81 581 92 HOH HOH . 
G 4 HOH A 82 582 79 HOH HOH . 
G 4 HOH A 83 583 197 HOH HOH . 
G 4 HOH A 84 584 179 HOH HOH . 
G 4 HOH A 85 585 97 HOH HOH . 
G 4 HOH A 86 586 2 HOH HOH . 
G 4 HOH A 87 587 190 HOH HOH . 
G 4 HOH A 88 588 61 HOH HOH . 
G 4 HOH A 89 589 237 HOH HOH . 
G 4 HOH A 90 590 37 HOH HOH . 
G 4 HOH A 91 591 31 HOH HOH . 
G 4 HOH A 92 592 225 HOH HOH . 
G 4 HOH A 93 593 193 HOH HOH . 
G 4 HOH A 94 594 228 HOH HOH . 
G 4 HOH A 95 595 204 HOH HOH . 
G 4 HOH A 96 596 4 HOH HOH . 
G 4 HOH A 97 597 137 HOH HOH . 
G 4 HOH A 98 598 101 HOH HOH . 
G 4 HOH A 99 599 188 HOH HOH . 
G 4 HOH A 100 600 155 HOH HOH . 
G 4 HOH A 101 601 230 HOH HOH . 
G 4 HOH A 102 602 210 HOH HOH . 
G 4 HOH A 103 603 104 HOH HOH . 
G 4 HOH A 104 604 139 HOH HOH . 
G 4 HOH A 105 605 77 HOH HOH . 
G 4 HOH A 106 606 57 HOH HOH . 
G 4 HOH A 107 607 202 HOH HOH . 
G 4 HOH A 108 608 234 HOH HOH . 
G 4 HOH A 109 609 233 HOH HOH . 
G 4 HOH A 110 610 154 HOH HOH . 
G 4 HOH A 111 611 143 HOH HOH . 
G 4 HOH A 112 612 229 HOH HOH . 
H 4 HOH B 1 501 165 HOH HOH . 
H 4 HOH B 2 502 45 HOH HOH . 
H 4 HOH B 3 503 11 HOH HOH . 
H 4 HOH B 4 504 12 HOH HOH . 
H 4 HOH B 5 505 118 HOH HOH . 
H 4 HOH B 6 506 171 HOH HOH . 
H 4 HOH B 7 507 68 HOH HOH . 
H 4 HOH B 8 508 169 HOH HOH . 
H 4 HOH B 9 509 192 HOH HOH . 
H 4 HOH B 10 510 236 HOH HOH . 
H 4 HOH B 11 511 213 HOH HOH . 
H 4 HOH B 12 512 108 HOH HOH . 
H 4 HOH B 13 513 196 HOH HOH . 
H 4 HOH B 14 514 59 HOH HOH . 
H 4 HOH B 15 515 70 HOH HOH . 
H 4 HOH B 16 516 127 HOH HOH . 
H 4 HOH B 17 517 29 HOH HOH . 
H 4 HOH B 18 518 86 HOH HOH . 
H 4 HOH B 19 519 199 HOH HOH . 
H 4 HOH B 20 520 74 HOH HOH . 
H 4 HOH B 21 521 214 HOH HOH . 
H 4 HOH B 22 522 194 HOH HOH . 
H 4 HOH B 23 523 96 HOH HOH . 
H 4 HOH B 24 524 141 HOH HOH . 
H 4 HOH B 25 525 241 HOH HOH . 
H 4 HOH B 26 526 160 HOH HOH . 
H 4 HOH B 27 527 185 HOH HOH . 
H 4 HOH B 28 528 93 HOH HOH . 
H 4 HOH B 29 529 150 HOH HOH . 
H 4 HOH B 30 530 207 HOH HOH . 
H 4 HOH B 31 531 164 HOH HOH . 
H 4 HOH B 32 532 5 HOH HOH . 
H 4 HOH B 33 533 51 HOH HOH . 
H 4 HOH B 34 534 129 HOH HOH . 
H 4 HOH B 35 535 147 HOH HOH . 
H 4 HOH B 36 536 90 HOH HOH . 
H 4 HOH B 37 537 240 HOH HOH . 
H 4 HOH B 38 538 32 HOH HOH . 
H 4 HOH B 39 539 128 HOH HOH . 
H 4 HOH B 40 540 28 HOH HOH . 
H 4 HOH B 41 541 3 HOH HOH . 
H 4 HOH B 42 542 82 HOH HOH . 
H 4 HOH B 43 543 62 HOH HOH . 
H 4 HOH B 44 544 189 HOH HOH . 
H 4 HOH B 45 545 76 HOH HOH . 
H 4 HOH B 46 546 73 HOH HOH . 
H 4 HOH B 47 547 44 HOH HOH . 
H 4 HOH B 48 548 33 HOH HOH . 
H 4 HOH B 49 549 130 HOH HOH . 
H 4 HOH B 50 550 52 HOH HOH . 
H 4 HOH B 51 551 219 HOH HOH . 
H 4 HOH B 52 552 87 HOH HOH . 
H 4 HOH B 53 553 53 HOH HOH . 
H 4 HOH B 54 554 107 HOH HOH . 
H 4 HOH B 55 555 175 HOH HOH . 
H 4 HOH B 56 556 180 HOH HOH . 
H 4 HOH B 57 557 153 HOH HOH . 
H 4 HOH B 58 558 195 HOH HOH . 
H 4 HOH B 59 559 133 HOH HOH . 
H 4 HOH B 60 560 148 HOH HOH . 
H 4 HOH B 61 561 226 HOH HOH . 
H 4 HOH B 62 562 99 HOH HOH . 
H 4 HOH B 63 563 14 HOH HOH . 
H 4 HOH B 64 564 239 HOH HOH . 
H 4 HOH B 65 565 16 HOH HOH . 
H 4 HOH B 66 566 145 HOH HOH . 
H 4 HOH B 67 567 187 HOH HOH . 
H 4 HOH B 68 568 162 HOH HOH . 
H 4 HOH B 69 569 156 HOH HOH . 
H 4 HOH B 70 570 174 HOH HOH . 
H 4 HOH B 71 571 71 HOH HOH . 
H 4 HOH B 72 572 34 HOH HOH . 
H 4 HOH B 73 573 103 HOH HOH . 
H 4 HOH B 74 574 9 HOH HOH . 
H 4 HOH B 75 575 181 HOH HOH . 
H 4 HOH B 76 576 20 HOH HOH . 
H 4 HOH B 77 577 114 HOH HOH . 
H 4 HOH B 78 578 7 HOH HOH . 
H 4 HOH B 79 579 10 HOH HOH . 
H 4 HOH B 80 580 89 HOH HOH . 
H 4 HOH B 81 581 39 HOH HOH . 
H 4 HOH B 82 582 18 HOH HOH . 
H 4 HOH B 83 583 42 HOH HOH . 
H 4 HOH B 84 584 54 HOH HOH . 
H 4 HOH B 85 585 65 HOH HOH . 
H 4 HOH B 86 586 109 HOH HOH . 
H 4 HOH B 87 587 55 HOH HOH . 
H 4 HOH B 88 588 63 HOH HOH . 
H 4 HOH B 89 589 13 HOH HOH . 
H 4 HOH B 90 590 191 HOH HOH . 
H 4 HOH B 91 591 178 HOH HOH . 
H 4 HOH B 92 592 144 HOH HOH . 
H 4 HOH B 93 593 91 HOH HOH . 
H 4 HOH B 94 594 75 HOH HOH . 
H 4 HOH B 95 595 209 HOH HOH . 
H 4 HOH B 96 596 66 HOH HOH . 
H 4 HOH B 97 597 36 HOH HOH . 
H 4 HOH B 98 598 38 HOH HOH . 
H 4 HOH B 99 599 22 HOH HOH . 
H 4 HOH B 100 600 81 HOH HOH . 
H 4 HOH B 101 601 15 HOH HOH . 
H 4 HOH B 102 602 117 HOH HOH . 
H 4 HOH B 103 603 211 HOH HOH . 
H 4 HOH B 104 604 83 HOH HOH . 
H 4 HOH B 105 605 27 HOH HOH . 
H 4 HOH B 106 606 98 HOH HOH . 
H 4 HOH B 107 607 227 HOH HOH . 
H 4 HOH B 108 608 35 HOH HOH . 
H 4 HOH B 109 609 231 HOH HOH . 
H 4 HOH B 110 610 110 HOH HOH . 
H 4 HOH B 111 611 220 HOH HOH . 
H 4 HOH B 112 612 222 HOH HOH . 
H 4 HOH B 113 613 120 HOH HOH . 
H 4 HOH B 114 614 200 HOH HOH . 
H 4 HOH B 115 615 119 HOH HOH . 
H 4 HOH B 116 616 223 HOH HOH . 
H 4 HOH B 117 617 106 HOH HOH . 
H 4 HOH B 118 618 235 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               23.42 
_atom_site.Cartn_y               -5.836 
_atom_site.Cartn_z               -45 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#