data_7XPY # _model_server_result.job_id G5YeGRrHlbXIIp65ndHpYw _model_server_result.datetime_utc '2024-10-18 17:22:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 7XPY # _exptl.entry_id 7XPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.505 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3S,3aR,4R,6Z,9S,10E,11aR)-9-acetyloxy-6-(acetyloxymethyl)-3,10-dimethyl-2-oxidanylidene-3a,4,5,8,9,11a-hexahydro-3H-cyclodeca[b]furan-4-yl] (E)-2-methyl-4-oxidanyl-but-2-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XPY _cell.length_a 78.005 _cell.length_b 80.17 _cell.length_c 150.857 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 576 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAT _struct_conn.ptnr2_label_comp_id EIB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EIB _struct_conn.ptnr2_auth_seq_id 1201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.842 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H32 O9' _chem_comp.formula_weight 464.505 _chem_comp.id EIB _chem_comp.mon_nstd_flag . _chem_comp.name '[(3S,3aR,4R,6Z,9S,10E,11aR)-9-acetyloxy-6-(acetyloxymethyl)-3,10-dimethyl-2-oxidanylidene-3a,4,5,8,9,11a-hexahydro-3H-cyclodeca[b]furan-4-yl] (E)-2-methyl-4-oxidanyl-but-2-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bound form of Eupalinolide B' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAS CAQ EIB doub 83 n n CAT CAP EIB sing 84 n n CAQ CAP EIB sing 85 n n CAQ OAR EIB sing 86 n n CAP CAM EIB sing 87 n n OAR CAL EIB sing 88 n n CAM CAL EIB sing 89 n n CAM CAN EIB sing 90 n n CBF CBD EIB sing 91 n n CBF OBG EIB sing 92 n n CBE CBB EIB sing 93 n n CAL CAK EIB sing 94 n n CBD CBB EIB doub 95 e n CAN OAU EIB sing 96 n n CAN CAO EIB sing 97 n n CBB CBA EIB sing 98 n n CAH CAG EIB sing 99 n n CBA OAU EIB sing 100 n n CBA OBC EIB doub 101 n n CAK CAG EIB doub 102 e n CAO CAJ EIB sing 103 n n CAG CAE EIB sing 104 n n CAJ CAI EIB doub 105 z n CAJ CAV EIB sing 106 n n CAI CAF EIB sing 107 n n CAE CAF EIB sing 108 n n CAE OAC EIB sing 109 n n OAW CAV EIB sing 110 n n OAW CAX EIB sing 111 n n OAC CAA EIB sing 112 n n CAX CAY EIB sing 113 n n CAX OAZ EIB doub 114 n n CAA OAD EIB doub 115 n n CAA CAB EIB sing 116 n n CAB H1 EIB sing 117 n n CAB H2 EIB sing 118 n n CAB H3 EIB sing 119 n n CAE H4 EIB sing 120 n n CAF H5 EIB sing 121 n n CAF H6 EIB sing 122 n n CAH H7 EIB sing 123 n n CAH H8 EIB sing 124 n n CAH H9 EIB sing 125 n n CAI H10 EIB sing 126 n n CAK H11 EIB sing 127 n n CAL H12 EIB sing 128 n n CAM H13 EIB sing 129 n n CAN H14 EIB sing 130 n n CAO H15 EIB sing 131 n n CAO H16 EIB sing 132 n n CAP H17 EIB sing 133 n n CAT H18 EIB sing 134 n n CAT H19 EIB sing 135 n n CAT H20 EIB sing 136 n n CAV H21 EIB sing 137 n n CAV H22 EIB sing 138 n n CAY H23 EIB sing 139 n n CAY H24 EIB sing 140 n n CAY H25 EIB sing 141 n n CBD H27 EIB sing 142 n n CBE H29 EIB sing 143 n n CBE H30 EIB sing 144 n n CBE H31 EIB sing 145 n n CBF H32 EIB sing 146 n n CBF H33 EIB sing 147 n n OBG H34 EIB sing 148 n n # _atom_sites.entry_id 7XPY _atom_sites.fract_transf_matrix[1][1] 0.01282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EIB A 1 1201 1101 EIB EIB . C 3 HOH A 1 1301 22 HOH HOH . C 3 HOH A 2 1302 10 HOH HOH . C 3 HOH A 3 1303 6 HOH HOH . C 3 HOH A 4 1304 19 HOH HOH . C 3 HOH A 5 1305 26 HOH HOH . C 3 HOH A 6 1306 23 HOH HOH . C 3 HOH A 7 1307 18 HOH HOH . C 3 HOH A 8 1308 15 HOH HOH . C 3 HOH A 9 1309 27 HOH HOH . C 3 HOH A 10 1310 5 HOH HOH . C 3 HOH A 11 1311 2 HOH HOH . C 3 HOH A 12 1312 7 HOH HOH . C 3 HOH A 13 1313 11 HOH HOH . C 3 HOH A 14 1314 24 HOH HOH . C 3 HOH A 15 1315 17 HOH HOH . C 3 HOH A 16 1316 4 HOH HOH . C 3 HOH A 17 1317 8 HOH HOH . C 3 HOH A 18 1318 3 HOH HOH . C 3 HOH A 19 1319 29 HOH HOH . C 3 HOH A 20 1320 13 HOH HOH . C 3 HOH A 21 1321 16 HOH HOH . C 3 HOH A 22 1322 28 HOH HOH . C 3 HOH A 23 1323 14 HOH HOH . C 3 HOH A 24 1324 9 HOH HOH . C 3 HOH A 25 1325 1 HOH HOH . C 3 HOH A 26 1326 20 HOH HOH . C 3 HOH A 27 1327 25 HOH HOH . C 3 HOH A 28 1328 21 HOH HOH . C 3 HOH A 29 1329 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA EIB . . . B 2 -40.46 40.749 27.144 0.79 109.75 ? CAA EIB 1201 A 1 HETATM 2 C CAB EIB . . . B 2 -39.128 41.008 27.849 0.79 104.8 ? CAB EIB 1201 A 1 HETATM 3 C CAE EIB . . . B 2 -39.131 40.254 25.321 0.79 100.33 ? CAE EIB 1201 A 1 HETATM 4 C CAF EIB . . . B 2 -38.089 39.228 25.875 0.79 99.74 ? CAF EIB 1201 A 1 HETATM 5 C CAG EIB . . . B 2 -39.305 40.068 23.952 0.79 94.17 ? CAG EIB 1201 A 1 HETATM 6 C CAH EIB . . . B 2 -38.63 40.851 23.025 0.79 95.2 ? CAH EIB 1201 A 1 HETATM 7 C CAI EIB . . . B 2 -37.739 38.224 24.952 0.79 92.82 ? CAI EIB 1201 A 1 HETATM 8 C CAJ EIB . . . B 2 -38.482 37.052 24.848 0.79 91.05 ? CAJ EIB 1201 A 1 HETATM 9 C CAK EIB . . . B 2 -40.111 39.004 23.572 0.79 100.76 ? CAK EIB 1201 A 1 HETATM 10 C CAL EIB . . . B 2 -40.259 38.508 22.3 0.79 93.81 ? CAL EIB 1201 A 1 HETATM 11 C CAM EIB . . . B 2 -39.053 37.631 22 0.79 89.56 ? CAM EIB 1201 A 1 HETATM 12 C CAN EIB . . . B 2 -39.165 36.222 22.61 0.79 83.12 ? CAN EIB 1201 A 1 HETATM 13 C CAO EIB . . . B 2 -38.162 36.047 23.769 0.79 91.57 ? CAO EIB 1201 A 1 HETATM 14 C CAP EIB . . . B 2 -39.114 37.567 20.511 0.79 87.3 ? CAP EIB 1201 A 1 HETATM 15 C CAQ EIB . . . B 2 -39.722 38.78 20.2 0.79 93.75 ? CAQ EIB 1201 A 1 HETATM 16 C CAT EIB . . . B 2 -37.684 37.556 19.997 0.79 82.23 ? CAT EIB 1201 A 1 HETATM 17 C CAV EIB . . . B 2 -39.561 36.842 25.695 0.79 85.35 ? CAV EIB 1201 A 1 HETATM 18 C CAX EIB . . . B 2 -40.273 34.983 26.776 0.79 91.4 ? CAX EIB 1201 A 1 HETATM 19 C CAY EIB . . . B 2 -41.746 34.704 27.08 0.79 86.73 ? CAY EIB 1201 A 1 HETATM 20 C CBA EIB . . . B 2 -40.774 34.677 23.069 0.79 88.43 ? CBA EIB 1201 A 1 HETATM 21 C CBB EIB . . . B 2 -42.191 34.327 22.624 0.79 81.38 ? CBB EIB 1201 A 1 HETATM 22 C CBD EIB . . . B 2 -42.632 32.867 22.569 0.79 76.17 ? CBD EIB 1201 A 1 HETATM 23 C CBE EIB . . . B 2 -43.166 35.435 22.23 0.79 96.11 ? CBE EIB 1201 A 1 HETATM 24 C CBF EIB . . . B 2 -44.072 32.648 22.11 0.79 96.51 ? CBF EIB 1201 A 1 HETATM 25 O OAC EIB . . . B 2 -40.38 40.045 25.982 0.79 108.51 ? OAC EIB 1201 A 1 HETATM 26 O OAD EIB . . . B 2 -41.517 41.158 27.623 0.79 119.64 ? OAD EIB 1201 A 1 HETATM 27 O OAR EIB . . . B 2 -40.177 39.493 21.273 0.79 93.09 ? OAR EIB 1201 A 1 HETATM 28 O OAS EIB . . . B 2 -39.834 39.15 19.033 0.79 112.86 ? OAS EIB 1201 A 1 HETATM 29 O OAU EIB . . . B 2 -40.492 36.002 23.085 0.79 91.37 ? OAU EIB 1201 A 1 HETATM 30 O OAW EIB . . . B 2 -40.033 35.503 25.546 0.79 77.93 ? OAW EIB 1201 A 1 HETATM 31 O OAZ EIB . . . B 2 -39.395 34.75 27.606 0.79 86.88 ? OAZ EIB 1201 A 1 HETATM 32 O OBC EIB . . . B 2 -39.975 33.803 23.39 0.79 91.7 ? OBC EIB 1201 A 1 HETATM 33 O OBG EIB . . . B 2 -44.911 32.499 23.257 0.79 98.91 ? OBG EIB 1201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 33 #