data_7XQ1
#
_model_server_result.job_id            GIYbyP3kRSsWlwgwDqdXoA 
_model_server_result.datetime_utc      '2024-11-05 12:37:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xq1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    7XQ1 
#
_exptl.entry_id    7XQ1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              690.543 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XQ1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XQ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C20 H24 N10 O10 P2 S2' 
_chem_comp.formula_weight    690.543 
_chem_comp.id                GJF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 P2 GJF doub 83 n n 
O10 C18 GJF sing 84 n n 
C20 N2 GJF doub 85 n y 
C20 N1 GJF sing 86 n y 
P2 S2 GJF sing 87 n n 
P2 O9 GJF sing 88 n n 
P2 O6 GJF sing 89 n n 
N2 C1 GJF sing 90 n y 
N1 C3 GJF doub 91 n y 
C18 C17 GJF sing 92 n n 
C18 C19 GJF sing 93 n n 
O9 C17 GJF sing 94 n n 
O6 C9 GJF sing 95 n n 
C1 C2 GJF doub 96 n y 
C1 N10 GJF sing 97 n y 
C9 C7 GJF sing 98 n n 
C17 C16 GJF sing 99 n n 
C3 C2 GJF sing 100 n y 
C3 N8 GJF sing 101 n n 
C19 N10 GJF sing 102 n n 
C19 O8 GJF sing 103 n n 
C2 N9 GJF sing 104 n y 
N10 C4 GJF sing 105 n y 
C16 O8 GJF sing 106 n n 
C16 C15 GJF sing 107 n n 
O1 C7 GJF sing 108 n n 
O1 C6 GJF sing 109 n n 
C7 C8 GJF sing 110 n n 
N9 C4 GJF doub 111 n y 
C12 N4 GJF doub 112 n y 
C12 N3 GJF sing 113 n y 
N4 C11 GJF sing 114 n y 
C15 O7 GJF sing 115 n n 
C8 C5 GJF sing 116 n n 
C8 O2 GJF sing 117 n n 
N3 C6 GJF sing 118 n n 
N3 C10 GJF sing 119 n y 
C6 C5 GJF sing 120 n n 
C5 O3 GJF sing 121 n n 
O7 P1 GJF sing 122 n n 
C11 C10 GJF doub 123 n y 
C11 C14 GJF sing 124 n y 
N7 C14 GJF sing 125 n n 
C10 N5 GJF sing 126 n y 
C14 N6 GJF doub 127 n y 
O3 P1 GJF sing 128 n n 
N5 C13 GJF doub 129 n y 
P1 O4 GJF doub 130 n n 
P1 S1 GJF sing 131 n n 
N6 C13 GJF sing 132 n y 
C4 H1 GJF sing 133 n n 
C5 H2 GJF sing 134 n n 
C6 H3 GJF sing 135 n n 
C7 H4 GJF sing 136 n n 
C8 H5 GJF sing 137 n n 
O2 H6 GJF sing 138 n n 
S1 H7 GJF sing 139 n n 
C9 H8 GJF sing 140 n n 
C9 H9 GJF sing 141 n n 
C12 H10 GJF sing 142 n n 
C13 H11 GJF sing 143 n n 
N7 H12 GJF sing 144 n n 
N7 H13 GJF sing 145 n n 
S2 H14 GJF sing 146 n n 
C15 H15 GJF sing 147 n n 
C15 H16 GJF sing 148 n n 
C16 H17 GJF sing 149 n n 
C17 H18 GJF sing 150 n n 
C18 H19 GJF sing 151 n n 
O10 H20 GJF sing 152 n n 
C19 H21 GJF sing 153 n n 
C20 H22 GJF sing 154 n n 
N8 H23 GJF sing 155 n n 
N8 H24 GJF sing 156 n n 
#
_atom_sites.entry_id                     7XQ1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GJF A 1 601 1 GJF DRG . 
C 2 GJF A 1 602 2 GJF DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GJF . . . B 2 166.87 161.369 157.453 1 83.09 ? C1 GJF 601 A 1 
HETATM 2 C C2 GJF . . . B 2 165.669 161.27 158.012 1 83.09 ? C2 GJF 601 A 1 
HETATM 3 C C3 GJF . . . B 2 164.784 160.362 157.607 1 83.09 ? C3 GJF 601 A 1 
HETATM 4 C C4 GJF . . . B 2 166.712 162.889 158.978 1 83.09 ? C4 GJF 601 A 1 
HETATM 5 N N1 GJF . . . B 2 165.066 159.489 156.641 1 83.09 ? N1 GJF 601 A 1 
HETATM 6 N N2 GJF . . . B 2 167.219 160.54 156.461 1 83.09 ? N2 GJF 601 A 1 
HETATM 7 C C5 GJF . . . B 2 167.953 168.097 160.264 1 83.09 ? C5 GJF 601 A 1 
HETATM 8 C C6 GJF . . . B 2 166.701 168.913 160.157 1 83.09 ? C6 GJF 601 A 1 
HETATM 9 C C7 GJF . . . B 2 168.299 170.009 158.905 1 83.09 ? C7 GJF 601 A 1 
HETATM 10 C C8 GJF . . . B 2 169.004 169.149 159.942 1 83.09 ? C8 GJF 601 A 1 
HETATM 11 O O1 GJF . . . B 2 166.916 169.557 158.895 1 83.09 ? O1 GJF 601 A 1 
HETATM 12 O O2 GJF . . . B 2 169.284 169.97 161.085 1 83.09 ? O2 GJF 601 A 1 
HETATM 13 O O3 GJF . . . B 2 168.118 167.594 161.594 1 83.09 ? O3 GJF 601 A 1 
HETATM 14 O O4 GJF . . . B 2 170.325 166.608 162.417 1 83.09 ? O4 GJF 601 A 1 
HETATM 15 S S1 GJF . . . B 2 167.982 165.225 162.918 1 83.09 ? S1 GJF 601 A 1 
HETATM 16 C C9 GJF . . . B 2 168.923 169.839 157.51 1 83.09 ? C9 GJF 601 A 1 
HETATM 17 C C10 GJF . . . B 2 164.392 168.221 160.793 1 83.09 ? C10 GJF 601 A 1 
HETATM 18 C C11 GJF . . . B 2 163.529 167.274 160.435 1 83.09 ? C11 GJF 601 A 1 
HETATM 19 C C12 GJF . . . B 2 165.315 167.032 159.254 1 83.09 ? C12 GJF 601 A 1 
HETATM 20 C C13 GJF . . . B 2 162.831 169.048 162.366 1 83.09 ? C13 GJF 601 A 1 
HETATM 21 C C14 GJF . . . B 2 162.323 167.206 160.991 1 83.09 ? C14 GJF 601 A 1 
HETATM 22 N N3 GJF . . . B 2 165.487 168.073 160.062 1 83.09 ? N3 GJF 601 A 1 
HETATM 23 N N4 GJF . . . B 2 164.096 166.553 159.475 1 83.09 ? N4 GJF 601 A 1 
HETATM 24 N N5 GJF . . . B 2 164.081 169.109 161.745 1 83.09 ? N5 GJF 601 A 1 
HETATM 25 N N6 GJF . . . B 2 161.943 168.051 161.957 1 83.09 ? N6 GJF 601 A 1 
HETATM 26 N N7 GJF . . . B 2 161.534 166.229 160.562 1 83.09 ? N7 GJF 601 A 1 
HETATM 27 O O5 GJF . . . B 2 169.42 167.863 154.917 1 83.09 ? O5 GJF 601 A 1 
HETATM 28 O O6 GJF . . . B 2 169.625 168.593 157.381 1 83.09 ? O6 GJF 601 A 1 
HETATM 29 S S2 GJF . . . B 2 167.429 167.159 156.648 1 83.09 ? S2 GJF 601 A 1 
HETATM 30 P P1 GJF . . . B 2 169.018 166.278 161.801 1 83.09 ? P1 GJF 601 A 1 
HETATM 31 P P2 GJF . . . B 2 169.135 167.477 156.318 1 83.09 ? P2 GJF 601 A 1 
HETATM 32 C C15 GJF . . . B 2 170.362 165.42 159.718 1 83.09 ? C15 GJF 601 A 1 
HETATM 33 O O7 GJF . . . B 2 169.103 165.563 160.379 1 83.09 ? O7 GJF 601 A 1 
HETATM 34 C C16 GJF . . . B 2 170.199 164.514 158.514 1 83.09 ? C16 GJF 601 A 1 
HETATM 35 O O8 GJF . . . B 2 169.487 163.337 158.908 1 83.09 ? O8 GJF 601 A 1 
HETATM 36 C C17 GJF . . . B 2 169.247 165.141 157.542 1 83.09 ? C17 GJF 601 A 1 
HETATM 37 O O9 GJF . . . B 2 169.923 166.133 156.746 1 83.09 ? O9 GJF 601 A 1 
HETATM 38 C C18 GJF . . . B 2 168.846 163.936 156.71 1 83.09 ? C18 GJF 601 A 1 
HETATM 39 O O10 GJF . . . B 2 169.824 163.65 155.704 1 83.09 ? O10 GJF 601 A 1 
HETATM 40 C C19 GJF . . . B 2 168.868 162.808 157.719 1 83.09 ? C19 GJF 601 A 1 
HETATM 41 C C20 GJF . . . B 2 166.313 159.561 156.03 1 83.09 ? C20 GJF 601 A 1 
HETATM 42 N N8 GJF . . . B 2 163.625 160.348 158.249 1 83.09 ? N8 GJF 601 A 1 
HETATM 43 N N9 GJF . . . B 2 165.575 162.205 158.95 1 83.09 ? N9 GJF 601 A 1 
HETATM 44 N N10 GJF . . . B 2 167.503 162.377 158.048 1 83.09 ? N10 GJF 601 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#