data_7XQE # _model_server_result.job_id ve3aUp3TKIENCEWoKh6DZA _model_server_result.datetime_utc '2024-12-19 12:50:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7XQE # _exptl.entry_id 7XQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XQE _cell.length_a 83.47 _cell.length_b 83.47 _cell.length_c 317.319 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1,2 B,G,H,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 83.47 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 137 n n C1 C2 GOL sing 138 n n C1 H11 GOL sing 139 n n C1 H12 GOL sing 140 n n O1 HO1 GOL sing 141 n n C2 O2 GOL sing 142 n n C2 C3 GOL sing 143 n n C2 H2 GOL sing 144 n n O2 HO2 GOL sing 145 n n C3 O3 GOL sing 146 n n C3 H31 GOL sing 147 n n C3 H32 GOL sing 148 n n O3 HO3 GOL sing 149 n n # _atom_sites.entry_id 7XQE _atom_sites.fract_transf_matrix[1][1] 0.01198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H4I A 1 601 1 H4I GA1 . D 3 GOL A 1 602 3 GOL GOL . E 3 GOL A 1 603 4 GOL GOL . F 4 EOH A 1 604 5 EOH EOH . G 2 H4I B 1 601 11 H4I GA1 . H 3 GOL B 1 602 13 GOL GOL . I 5 HOH A 1 701 11 HOH HOH . I 5 HOH A 2 702 6 HOH HOH . I 5 HOH A 3 703 10 HOH HOH . I 5 HOH A 4 704 1 HOH HOH . I 5 HOH A 5 705 2 HOH HOH . I 5 HOH A 6 706 9 HOH HOH . I 5 HOH A 7 707 3 HOH HOH . I 5 HOH A 8 708 8 HOH HOH . J 5 HOH B 1 701 12 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 7 HOH HOH . J 5 HOH B 4 704 5 HOH HOH . J 5 HOH B 5 705 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 46.484 6.098 19.955 1 84.86 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . D 3 47.371 7.159 19.569 1 86.43 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . D 3 45.575 5.643 18.799 1 79.62 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . D 3 46.161 5.927 17.516 1 67.54 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . D 3 45.297 4.139 18.938 1 77.39 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . D 3 44.137 3.689 18.217 1 71.03 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #