data_7XR6
#
_model_server_result.job_id            AqdeiJnEjDTt36oZNQxTDg 
_model_server_result.datetime_utc      '2024-12-26 23:11:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":613}' 
#
_entry.id    7XR6 
#
_exptl.entry_id    7XR6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    30 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XR6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 P N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 CA N N 
? 4 DA N N 
? 4 GA N N 
? 4 HA N N 
? 4 IA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 MA N N 
? 4 NA N N 
? 4 OA N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 274 n n 
P O14 PC1 doub 275 n n 
P O13 PC1 sing 276 n n 
P O11 PC1 sing 277 n n 
O13 C11 PC1 sing 278 n n 
C11 C12 PC1 sing 279 n n 
C11 H111 PC1 sing 280 n n 
C11 H112 PC1 sing 281 n n 
C12 N PC1 sing 282 n n 
C12 H121 PC1 sing 283 n n 
C12 H122 PC1 sing 284 n n 
N C13 PC1 sing 285 n n 
N C14 PC1 sing 286 n n 
N C15 PC1 sing 287 n n 
C13 H131 PC1 sing 288 n n 
C13 H132 PC1 sing 289 n n 
C13 H133 PC1 sing 290 n n 
C14 H141 PC1 sing 291 n n 
C14 H142 PC1 sing 292 n n 
C14 H143 PC1 sing 293 n n 
C15 H151 PC1 sing 294 n n 
C15 H152 PC1 sing 295 n n 
C15 H153 PC1 sing 296 n n 
O11 C1 PC1 sing 297 n n 
C1 C2 PC1 sing 298 n n 
C1 H11 PC1 sing 299 n n 
C1 H12 PC1 sing 300 n n 
C2 O21 PC1 sing 301 n n 
C2 C3 PC1 sing 302 n n 
C2 H2 PC1 sing 303 n n 
O21 C21 PC1 sing 304 n n 
C21 O22 PC1 doub 305 n n 
C21 C22 PC1 sing 306 n n 
C22 C23 PC1 sing 307 n n 
C22 H221 PC1 sing 308 n n 
C22 H222 PC1 sing 309 n n 
C23 C24 PC1 sing 310 n n 
C23 H231 PC1 sing 311 n n 
C23 H232 PC1 sing 312 n n 
C24 C25 PC1 sing 313 n n 
C24 H241 PC1 sing 314 n n 
C24 H242 PC1 sing 315 n n 
C25 C26 PC1 sing 316 n n 
C25 H251 PC1 sing 317 n n 
C25 H252 PC1 sing 318 n n 
C26 C27 PC1 sing 319 n n 
C26 H261 PC1 sing 320 n n 
C26 H262 PC1 sing 321 n n 
C27 C28 PC1 sing 322 n n 
C27 H271 PC1 sing 323 n n 
C27 H272 PC1 sing 324 n n 
C28 C29 PC1 sing 325 n n 
C28 H281 PC1 sing 326 n n 
C28 H282 PC1 sing 327 n n 
C29 C2A PC1 sing 328 n n 
C29 H291 PC1 sing 329 n n 
C29 H292 PC1 sing 330 n n 
C2A C2B PC1 sing 331 n n 
C2A H2A1 PC1 sing 332 n n 
C2A H2A2 PC1 sing 333 n n 
C2B C2C PC1 sing 334 n n 
C2B H2B1 PC1 sing 335 n n 
C2B H2B2 PC1 sing 336 n n 
C2C C2D PC1 sing 337 n n 
C2C H2C1 PC1 sing 338 n n 
C2C H2C2 PC1 sing 339 n n 
C2D C2E PC1 sing 340 n n 
C2D H2D1 PC1 sing 341 n n 
C2D H2D2 PC1 sing 342 n n 
C2E C2F PC1 sing 343 n n 
C2E H2E1 PC1 sing 344 n n 
C2E H2E2 PC1 sing 345 n n 
C2F C2G PC1 sing 346 n n 
C2F H2F1 PC1 sing 347 n n 
C2F H2F2 PC1 sing 348 n n 
C2G C2H PC1 sing 349 n n 
C2G H2G1 PC1 sing 350 n n 
C2G H2G2 PC1 sing 351 n n 
C2H C2I PC1 sing 352 n n 
C2H H2H1 PC1 sing 353 n n 
C2H H2H2 PC1 sing 354 n n 
C2I H2I1 PC1 sing 355 n n 
C2I H2I2 PC1 sing 356 n n 
C2I H2I3 PC1 sing 357 n n 
C3 O31 PC1 sing 358 n n 
C3 H31 PC1 sing 359 n n 
C3 H32 PC1 sing 360 n n 
O31 C31 PC1 sing 361 n n 
C31 O32 PC1 doub 362 n n 
C31 C32 PC1 sing 363 n n 
C32 C33 PC1 sing 364 n n 
C32 H321 PC1 sing 365 n n 
C32 H322 PC1 sing 366 n n 
C33 C34 PC1 sing 367 n n 
C33 H331 PC1 sing 368 n n 
C33 H332 PC1 sing 369 n n 
C34 C35 PC1 sing 370 n n 
C34 H341 PC1 sing 371 n n 
C34 H342 PC1 sing 372 n n 
C35 C36 PC1 sing 373 n n 
C35 H351 PC1 sing 374 n n 
C35 H352 PC1 sing 375 n n 
C36 C37 PC1 sing 376 n n 
C36 H361 PC1 sing 377 n n 
C36 H362 PC1 sing 378 n n 
C37 C38 PC1 sing 379 n n 
C37 H371 PC1 sing 380 n n 
C37 H372 PC1 sing 381 n n 
C38 C39 PC1 sing 382 n n 
C38 H381 PC1 sing 383 n n 
C38 H382 PC1 sing 384 n n 
C39 C3A PC1 sing 385 n n 
C39 H391 PC1 sing 386 n n 
C39 H392 PC1 sing 387 n n 
C3A C3B PC1 sing 388 n n 
C3A H3A1 PC1 sing 389 n n 
C3A H3A2 PC1 sing 390 n n 
C3B C3C PC1 sing 391 n n 
C3B H3B1 PC1 sing 392 n n 
C3B H3B2 PC1 sing 393 n n 
C3C C3D PC1 sing 394 n n 
C3C H3C1 PC1 sing 395 n n 
C3C H3C2 PC1 sing 396 n n 
C3D C3E PC1 sing 397 n n 
C3D H3D1 PC1 sing 398 n n 
C3D H3D2 PC1 sing 399 n n 
C3E C3F PC1 sing 400 n n 
C3E H3E1 PC1 sing 401 n n 
C3E H3E2 PC1 sing 402 n n 
C3F C3G PC1 sing 403 n n 
C3F H3F1 PC1 sing 404 n n 
C3F H3F2 PC1 sing 405 n n 
C3G C3H PC1 sing 406 n n 
C3G H3G1 PC1 sing 407 n n 
C3G H3G2 PC1 sing 408 n n 
C3H C3I PC1 sing 409 n n 
C3H H3H1 PC1 sing 410 n n 
C3H H3H2 PC1 sing 411 n n 
C3I H3I1 PC1 sing 412 n n 
C3I H3I2 PC1 sing 413 n n 
C3I H3I3 PC1 sing 414 n n 
#
_atom_sites.entry_id                     7XR6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GJ0 A 1 601 601 GJ0 WAY . 
E 3 Y01 A 1 602 602 Y01 Y01 . 
F 4 PC1 A 1 603 603 PC1 PC1 . 
G 4 PC1 A 1 604 604 PC1 PC1 . 
H 4 PC1 A 1 605 605 PC1 PC1 . 
I 4 PC1 A 1 606 606 PC1 PC1 . 
J 4 PC1 A 1 607 607 PC1 PC1 . 
K 4 PC1 A 1 608 608 PC1 PC1 . 
L 4 PC1 A 1 609 609 PC1 PC1 . 
M 4 PC1 A 1 610 610 PC1 PC1 . 
N 4 PC1 A 1 611 611 PC1 PC1 . 
O 5 XKJ A 1 612 612 XKJ DDM . 
P 4 PC1 A 1 613 613 PC1 PC1 . 
Q 2 GJ0 B 1 601 601 GJ0 WAY . 
R 3 Y01 B 1 602 602 Y01 Y01 . 
S 4 PC1 B 1 603 603 PC1 PC1 . 
T 4 PC1 B 1 604 604 PC1 PC1 . 
U 4 PC1 B 1 605 605 PC1 PC1 . 
V 4 PC1 B 1 606 606 PC1 PC1 . 
W 4 PC1 B 1 607 607 PC1 PC1 . 
X 4 PC1 B 1 608 608 PC1 PC1 . 
Y 4 PC1 B 1 609 609 PC1 PC1 . 
Z 4 PC1 B 1 610 610 PC1 PC1 . 
AA 4 PC1 B 1 611 611 PC1 PC1 . 
BA 5 XKJ B 1 612 612 XKJ DDM . 
CA 4 PC1 B 1 613 613 PC1 PC1 . 
DA 4 PC1 C 1 601 613 PC1 PC1 . 
EA 2 GJ0 C 1 602 601 GJ0 WAY . 
FA 3 Y01 C 1 603 602 Y01 Y01 . 
GA 4 PC1 C 1 604 603 PC1 PC1 . 
HA 4 PC1 C 1 605 604 PC1 PC1 . 
IA 4 PC1 C 1 606 605 PC1 PC1 . 
JA 4 PC1 C 1 607 606 PC1 PC1 . 
KA 4 PC1 C 1 608 607 PC1 PC1 . 
LA 4 PC1 C 1 609 608 PC1 PC1 . 
MA 4 PC1 C 1 610 609 PC1 PC1 . 
NA 4 PC1 C 1 611 610 PC1 PC1 . 
OA 4 PC1 C 1 612 611 PC1 PC1 . 
PA 5 XKJ C 1 613 612 XKJ DDM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 PC1 . . . CA 4 136.528 115.174 123.956 1 24.26 ? C21 PC1 613 B 1 
HETATM 2 C C22 PC1 . . . CA 4 135.053 115.38 123.607 1 24.26 ? C22 PC1 613 B 1 
HETATM 3 C C23 PC1 . . . CA 4 134.883 115.362 122.089 1 24.26 ? C23 PC1 613 B 1 
HETATM 4 C C24 PC1 . . . CA 4 133.418 115.119 121.741 1 24.26 ? C24 PC1 613 B 1 
HETATM 5 C C25 PC1 . . . CA 4 133.334 114.275 120.473 1 24.26 ? C25 PC1 613 B 1 
HETATM 6 C C26 PC1 . . . CA 4 134.218 113.041 120.619 1 24.26 ? C26 PC1 613 B 1 
HETATM 7 C C27 PC1 . . . CA 4 133.346 111.821 120.883 1 24.26 ? C27 PC1 613 B 1 
HETATM 8 C C28 PC1 . . . CA 4 134.155 110.547 120.663 1 24.26 ? C28 PC1 613 B 1 
HETATM 9 C C29 PC1 . . . CA 4 134.153 109.732 121.95 1 24.26 ? C29 PC1 613 B 1 
HETATM 10 C C2A PC1 . . . CA 4 134.231 108.246 121.621 1 24.26 ? C2A PC1 613 B 1 
HETATM 11 C C2B PC1 . . . CA 4 133.157 107.886 120.6 1 24.26 ? C2B PC1 613 B 1 
HETATM 12 C C2C PC1 . . . CA 4 133.171 106.379 120.37 1 24.26 ? C2C PC1 613 B 1 
HETATM 13 C C2D PC1 . . . CA 4 132.302 106.034 119.163 1 24.26 ? C2D PC1 613 B 1 
HETATM 14 C C2E PC1 . . . CA 4 132.848 106.731 117.919 1 24.26 ? C2E PC1 613 B 1 
HETATM 15 C C2F PC1 . . . CA 4 131.949 106.397 116.728 1 24.26 ? C2F PC1 613 B 1 
HETATM 16 C C2G PC1 . . . CA 4 132.441 107.134 115.482 1 24.26 ? C2G PC1 613 B 1 
HETATM 17 C C2H PC1 . . . CA 4 131.379 107.042 114.388 1 24.26 ? C2H PC1 613 B 1 
HETATM 18 C C2I PC1 . . . CA 4 131.062 105.574 114.103 1 24.26 ? C2I PC1 613 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           18 
#