data_7XRR
#
_model_server_result.job_id            yEuMceuCeiFD0QE8vKBVeA 
_model_server_result.datetime_utc      '2024-11-22 23:55:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xrr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    7XRR 
#
_exptl.entry_id    7XRR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.417 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},2~{S})-2-[(2,4-dimethylpyrimidin-5-yl)oxymethyl]-~{N}-(5-fluoranylpyridin-2-yl)-2-(3-fluorophenyl)cyclopropane-1-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XRR 
_cell.length_a            49.59 
_cell.length_b            90.23 
_cell.length_c            112.32 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XRR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             99 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              127 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             182 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              210 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.019 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C22 H20 F2 N4 O2' 
_chem_comp.formula_weight    410.417 
_chem_comp.id                NRK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},2~{S})-2-[(2,4-dimethylpyrimidin-5-yl)oxymethyl]-~{N}-(5-fluoranylpyridin-2-yl)-2-(3-fluorophenyl)cyclopropane-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 C01 NRK sing 235 n n 
C02 C03 NRK sing 236 n n 
C01 C05 NRK sing 237 n n 
C01 C03 NRK sing 238 n n 
O19 C05 NRK doub 239 n n 
C05 N20 NRK sing 240 n n 
N20 C21 NRK sing 241 n n 
C21 N26 NRK doub 242 n y 
C21 C22 NRK sing 243 n y 
N26 C25 NRK sing 244 n y 
C25 C24 NRK doub 245 n y 
C22 C23 NRK doub 246 n y 
C03 C06 NRK sing 247 n n 
C03 C04 NRK sing 248 n n 
C24 C23 NRK sing 249 n y 
C24 F29 NRK sing 250 n n 
C06 C11 NRK doub 251 n y 
C06 C07 NRK sing 252 n y 
C11 C10 NRK sing 253 n y 
C04 O12 NRK sing 254 n n 
C07 C08 NRK doub 255 n y 
C10 C09 NRK doub 256 n y 
C08 C09 NRK sing 257 n y 
C08 F30 NRK sing 258 n n 
O12 C13 NRK sing 259 n n 
C18 C13 NRK doub 260 n y 
C18 N17 NRK sing 261 n y 
C13 C14 NRK sing 262 n y 
N17 C16 NRK doub 263 n y 
C14 C28 NRK sing 264 n n 
C14 N15 NRK doub 265 n y 
C16 N15 NRK sing 266 n y 
C16 C27 NRK sing 267 n n 
C01 H011 NRK sing 268 n n 
C02 H021 NRK sing 269 n n 
C02 H022 NRK sing 270 n n 
C04 H041 NRK sing 271 n n 
C04 H042 NRK sing 272 n n 
C07 H071 NRK sing 273 n n 
C09 H091 NRK sing 274 n n 
C10 H101 NRK sing 275 n n 
C11 H111 NRK sing 276 n n 
C18 H181 NRK sing 277 n n 
N20 H201 NRK sing 278 n n 
C22 H221 NRK sing 279 n n 
C23 H231 NRK sing 280 n n 
C25 H251 NRK sing 281 n n 
C27 H271 NRK sing 282 n n 
C27 H273 NRK sing 283 n n 
C27 H272 NRK sing 284 n n 
C28 H282 NRK sing 285 n n 
C28 H281 NRK sing 286 n n 
C28 H283 NRK sing 287 n n 
#
_atom_sites.entry_id                     7XRR 
_atom_sites.fract_transf_matrix[1][1]    0.020165 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           NRK 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1001 
_pdbx_nonpoly_scheme.auth_seq_num     1001 
_pdbx_nonpoly_scheme.pdb_mon_id       NRK 
_pdbx_nonpoly_scheme.auth_mon_id      NRK 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 NRK . . . B 2 -3.558 7.652 20.258 1 59.23 ? C01 NRK 1001 A 1 
HETATM 2 C C02 NRK . . . B 2 -3.064 8.795 19.424 1 60.19 ? C02 NRK 1001 A 1 
HETATM 3 C C03 NRK . . . B 2 -2.036 7.902 20.053 1 58.73 ? C03 NRK 1001 A 1 
HETATM 4 C C04 NRK . . . B 2 -1.293 6.93 19.185 1 59.75 ? C04 NRK 1001 A 1 
HETATM 5 C C05 NRK . . . B 2 -4.126 6.485 19.555 1 61.48 ? C05 NRK 1001 A 1 
HETATM 6 C C06 NRK . . . B 2 -1.282 8.4 21.25 1 57.6 ? C06 NRK 1001 A 1 
HETATM 7 C C07 NRK . . . B 2 -1.446 7.812 22.496 1 57.1 ? C07 NRK 1001 A 1 
HETATM 8 C C08 NRK . . . B 2 -0.75 8.287 23.574 1 54.57 ? C08 NRK 1001 A 1 
HETATM 9 C C09 NRK . . . B 2 0.118 9.337 23.48 1 51.74 ? C09 NRK 1001 A 1 
HETATM 10 C C10 NRK . . . B 2 0.29 9.935 22.252 1 53.12 ? C10 NRK 1001 A 1 
HETATM 11 C C11 NRK . . . B 2 -0.406 9.474 21.144 1 55.9 ? C11 NRK 1001 A 1 
HETATM 12 O O12 NRK . . . B 2 -1.011 5.776 19.984 1 58.98 ? O12 NRK 1001 A 1 
HETATM 13 C C13 NRK . . . B 2 -1.106 4.562 19.38 1 60.14 ? C13 NRK 1001 A 1 
HETATM 14 C C14 NRK . . . B 2 -1.057 3.384 20.132 1 61.44 ? C14 NRK 1001 A 1 
HETATM 15 N N15 NRK . . . B 2 -1.167 2.202 19.519 1 63.46 ? N15 NRK 1001 A 1 
HETATM 16 C C16 NRK . . . B 2 -1.327 2.182 18.197 1 60.71 ? C16 NRK 1001 A 1 
HETATM 17 N N17 NRK . . . B 2 -1.39 3.268 17.42 1 59.14 ? N17 NRK 1001 A 1 
HETATM 18 C C18 NRK . . . B 2 -1.284 4.461 18.017 1 60.18 ? C18 NRK 1001 A 1 
HETATM 19 O O19 NRK . . . B 2 -4.378 6.505 18.357 1 61.4 ? O19 NRK 1001 A 1 
HETATM 20 N N20 NRK . . . B 2 -4.293 5.395 20.346 1 61.73 ? N20 NRK 1001 A 1 
HETATM 21 C C21 NRK . . . B 2 -4.542 4.064 19.963 1 61.8 ? C21 NRK 1001 A 1 
HETATM 22 C C22 NRK . . . B 2 -4.544 3.624 18.64 1 63.8 ? C22 NRK 1001 A 1 
HETATM 23 C C23 NRK . . . B 2 -4.796 2.29 18.394 1 62.37 ? C23 NRK 1001 A 1 
HETATM 24 C C24 NRK . . . B 2 -5.023 1.468 19.461 1 61.56 ? C24 NRK 1001 A 1 
HETATM 25 C C25 NRK . . . B 2 -5.003 1.948 20.735 1 60.77 ? C25 NRK 1001 A 1 
HETATM 26 N N26 NRK . . . B 2 -4.76 3.242 20.996 1 60.91 ? N26 NRK 1001 A 1 
HETATM 27 C C27 NRK . . . B 2 -1.447 0.849 17.534 1 62.14 ? C27 NRK 1001 A 1 
HETATM 28 C C28 NRK . . . B 2 -0.878 3.398 21.618 1 59.7 ? C28 NRK 1001 A 1 
HETATM 29 F F29 NRK . . . B 2 -5.272 0.147 19.239 1 65.23 ? F29 NRK 1001 A 1 
HETATM 30 F F30 NRK . . . B 2 -0.925 7.69 24.782 1 55.99 ? F30 NRK 1001 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#