data_7XRU # _model_server_result.job_id '_Dv6Al852r8bcUyUXx43Zw' _model_server_result.datetime_utc '2024-11-07 14:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7XRU # _exptl.entry_id 7XRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.317 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XRU _cell.length_a 51.35 _cell.length_b 113.78 _cell.length_c 179.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 160 A GLU 169 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc2 A OE1 GLU 160 A GLU 169 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc3 B O3A 2CF . A 2CF 601 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc4 B O3A 2CF . A 2CF 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 B OB3 2CF . A 2CF 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 C MG MG . A MG 602 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C15 H27 F O7 P2' _chem_comp.formula_weight 400.317 _chem_comp.id 2CF _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 F 2CF sing 1 n n C2 C1 2CF doub 2 n n C1 C15 2CF sing 3 e n C4 C2 2CF sing 4 n n C3 C2 2CF sing 5 n n C3 C5 2CF sing 6 n n C3 H3 2CF sing 7 n n C3 H3A 2CF sing 8 n n C4 H4 2CF sing 9 n n C4 H4A 2CF sing 10 n n C4 H4B 2CF sing 11 n n C5 C6 2CF sing 12 n n C5 H5 2CF sing 13 n n C5 H5A 2CF sing 14 n n C6 C7 2CF doub 15 e n C6 H6 2CF sing 16 n n C7 C14 2CF sing 17 n n C7 C8 2CF sing 18 n n C9 C8 2CF sing 19 n n C8 H8 2CF sing 20 n n C8 H8A 2CF sing 21 n n C10 C9 2CF sing 22 n n C9 H9 2CF sing 23 n n C9 H9A 2CF sing 24 n n O1A PA 2CF sing 25 n n PA O2A 2CF doub 26 n n PA O3A 2CF sing 27 n n PA OB4 2CF sing 28 n n OB2 PB 2CF doub 29 n n PB OB3 2CF sing 30 n n PB OB4 2CF sing 31 n n PB OB1 2CF sing 32 n n C11 C10 2CF doub 33 n n C10 H10 2CF sing 34 n n C12 C11 2CF sing 35 n n C13 C11 2CF sing 36 n n C12 H12 2CF sing 37 n n C12 H12A 2CF sing 38 n n C12 H12B 2CF sing 39 n n C13 H13 2CF sing 40 n n C13 H13A 2CF sing 41 n n C13 H13B 2CF sing 42 n n C14 H14 2CF sing 43 n n C14 H14A 2CF sing 44 n n C14 H14B 2CF sing 45 n n C15 O1A 2CF sing 46 n n C15 H15 2CF sing 47 n n C15 H15A 2CF sing 48 n n O3A HO3A 2CF sing 49 n n OB1 HOB1 2CF sing 50 n n OB3 HOB3 2CF sing 51 n n # _atom_sites.entry_id 7XRU _atom_sites.fract_transf_matrix[1][1] 0.019474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2CF A 1 601 601 2CF FPF . C 3 MG A 1 602 1 MG MG . D 3 MG A 1 603 2 MG MG . E 4 HOH A 1 701 111 HOH HOH . E 4 HOH A 2 702 82 HOH HOH . E 4 HOH A 3 703 92 HOH HOH . E 4 HOH A 4 704 44 HOH HOH . E 4 HOH A 5 705 122 HOH HOH . E 4 HOH A 6 706 56 HOH HOH . E 4 HOH A 7 707 32 HOH HOH . E 4 HOH A 8 708 90 HOH HOH . E 4 HOH A 9 709 57 HOH HOH . E 4 HOH A 10 710 78 HOH HOH . E 4 HOH A 11 711 13 HOH HOH . E 4 HOH A 12 712 54 HOH HOH . E 4 HOH A 13 713 71 HOH HOH . E 4 HOH A 14 714 67 HOH HOH . E 4 HOH A 15 715 91 HOH HOH . E 4 HOH A 16 716 104 HOH HOH . E 4 HOH A 17 717 73 HOH HOH . E 4 HOH A 18 718 22 HOH HOH . E 4 HOH A 19 719 40 HOH HOH . E 4 HOH A 20 720 24 HOH HOH . E 4 HOH A 21 721 11 HOH HOH . E 4 HOH A 22 722 26 HOH HOH . E 4 HOH A 23 723 75 HOH HOH . E 4 HOH A 24 724 85 HOH HOH . E 4 HOH A 25 725 7 HOH HOH . E 4 HOH A 26 726 19 HOH HOH . E 4 HOH A 27 727 33 HOH HOH . E 4 HOH A 28 728 60 HOH HOH . E 4 HOH A 29 729 28 HOH HOH . E 4 HOH A 30 730 106 HOH HOH . E 4 HOH A 31 731 12 HOH HOH . E 4 HOH A 32 732 86 HOH HOH . E 4 HOH A 33 733 100 HOH HOH . E 4 HOH A 34 734 62 HOH HOH . E 4 HOH A 35 735 87 HOH HOH . E 4 HOH A 36 736 45 HOH HOH . E 4 HOH A 37 737 29 HOH HOH . E 4 HOH A 38 738 113 HOH HOH . E 4 HOH A 39 739 5 HOH HOH . E 4 HOH A 40 740 112 HOH HOH . E 4 HOH A 41 741 10 HOH HOH . E 4 HOH A 42 742 41 HOH HOH . E 4 HOH A 43 743 2 HOH HOH . E 4 HOH A 44 744 48 HOH HOH . E 4 HOH A 45 745 119 HOH HOH . E 4 HOH A 46 746 18 HOH HOH . E 4 HOH A 47 747 120 HOH HOH . E 4 HOH A 48 748 70 HOH HOH . E 4 HOH A 49 749 88 HOH HOH . E 4 HOH A 50 750 95 HOH HOH . E 4 HOH A 51 751 15 HOH HOH . E 4 HOH A 52 752 46 HOH HOH . E 4 HOH A 53 753 68 HOH HOH . E 4 HOH A 54 754 47 HOH HOH . E 4 HOH A 55 755 83 HOH HOH . E 4 HOH A 56 756 79 HOH HOH . E 4 HOH A 57 757 72 HOH HOH . E 4 HOH A 58 758 1 HOH HOH . E 4 HOH A 59 759 16 HOH HOH . E 4 HOH A 60 760 89 HOH HOH . E 4 HOH A 61 761 58 HOH HOH . E 4 HOH A 62 762 8 HOH HOH . E 4 HOH A 63 763 49 HOH HOH . E 4 HOH A 64 764 123 HOH HOH . E 4 HOH A 65 765 103 HOH HOH . E 4 HOH A 66 766 14 HOH HOH . E 4 HOH A 67 767 35 HOH HOH . E 4 HOH A 68 768 66 HOH HOH . E 4 HOH A 69 769 21 HOH HOH . E 4 HOH A 70 770 20 HOH HOH . E 4 HOH A 71 771 114 HOH HOH . E 4 HOH A 72 772 64 HOH HOH . E 4 HOH A 73 773 52 HOH HOH . E 4 HOH A 74 774 74 HOH HOH . E 4 HOH A 75 775 80 HOH HOH . E 4 HOH A 76 776 101 HOH HOH . E 4 HOH A 77 777 99 HOH HOH . E 4 HOH A 78 778 53 HOH HOH . E 4 HOH A 79 779 36 HOH HOH . E 4 HOH A 80 780 50 HOH HOH . E 4 HOH A 81 781 105 HOH HOH . E 4 HOH A 82 782 4 HOH HOH . E 4 HOH A 83 783 31 HOH HOH . E 4 HOH A 84 784 39 HOH HOH . E 4 HOH A 85 785 51 HOH HOH . E 4 HOH A 86 786 17 HOH HOH . E 4 HOH A 87 787 81 HOH HOH . E 4 HOH A 88 788 23 HOH HOH . E 4 HOH A 89 789 25 HOH HOH . E 4 HOH A 90 790 98 HOH HOH . E 4 HOH A 91 791 94 HOH HOH . E 4 HOH A 92 792 3 HOH HOH . E 4 HOH A 93 793 27 HOH HOH . E 4 HOH A 94 794 37 HOH HOH . E 4 HOH A 95 795 42 HOH HOH . E 4 HOH A 96 796 65 HOH HOH . E 4 HOH A 97 797 61 HOH HOH . E 4 HOH A 98 798 77 HOH HOH . E 4 HOH A 99 799 55 HOH HOH . E 4 HOH A 100 800 6 HOH HOH . E 4 HOH A 101 801 69 HOH HOH . E 4 HOH A 102 802 107 HOH HOH . E 4 HOH A 103 803 38 HOH HOH . E 4 HOH A 104 804 84 HOH HOH . E 4 HOH A 105 805 93 HOH HOH . E 4 HOH A 106 806 96 HOH HOH . E 4 HOH A 107 807 109 HOH HOH . E 4 HOH A 108 808 59 HOH HOH . E 4 HOH A 109 809 34 HOH HOH . E 4 HOH A 110 810 121 HOH HOH . E 4 HOH A 111 811 43 HOH HOH . E 4 HOH A 112 812 116 HOH HOH . E 4 HOH A 113 813 30 HOH HOH . E 4 HOH A 114 814 97 HOH HOH . E 4 HOH A 115 815 110 HOH HOH . E 4 HOH A 116 816 9 HOH HOH . E 4 HOH A 117 817 63 HOH HOH . E 4 HOH A 118 818 76 HOH HOH . E 4 HOH A 119 819 117 HOH HOH . E 4 HOH A 120 820 115 HOH HOH . E 4 HOH A 121 821 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F 2CF . . . B 2 -18.007 -1.287 -20.014 1 39.89 ? F 2CF 601 A 1 HETATM 2 C C1 2CF . . . B 2 -18.436 -0.967 -18.766 1 40.89 ? C1 2CF 601 A 1 HETATM 3 C C2 2CF . . . B 2 -17.818 -1.343 -17.652 1 44.02 ? C2 2CF 601 A 1 HETATM 4 C C3 2CF . . . B 2 -17.409 -2.767 -17.397 1 44.33 ? C3 2CF 601 A 1 HETATM 5 C C4 2CF . . . B 2 -17.528 -0.391 -16.531 1 45.19 ? C4 2CF 601 A 1 HETATM 6 C C5 2CF . . . B 2 -17.69 -3.732 -18.531 1 42.25 ? C5 2CF 601 A 1 HETATM 7 C C6 2CF . . . B 2 -19.139 -3.843 -18.895 1 45.64 ? C6 2CF 601 A 1 HETATM 8 C C7 2CF . . . B 2 -20.16 -4.2 -18.123 1 49.25 ? C7 2CF 601 A 1 HETATM 9 C C8 2CF . . . B 2 -21.535 -4.396 -18.696 1 49.43 ? C8 2CF 601 A 1 HETATM 10 C C9 2CF . . . B 2 -21.994 -5.842 -18.685 1 46.82 ? C9 2CF 601 A 1 HETATM 11 P PA 2CF . . . B 2 -20.57 2.281 -19.154 1 48.35 ? PA 2CF 601 A 1 HETATM 12 P PB 2CF . . . B 2 -22.489 2.91 -21.284 1 53.83 ? PB 2CF 601 A 1 HETATM 13 C C10 2CF . . . B 2 -21.173 -6.705 -19.594 1 50.69 ? C10 2CF 601 A 1 HETATM 14 C C11 2CF . . . B 2 -19.916 -7.096 -19.449 1 51.25 ? C11 2CF 601 A 1 HETATM 15 C C12 2CF . . . B 2 -19.226 -7.139 -18.12 1 44.5 ? C12 2CF 601 A 1 HETATM 16 C C13 2CF . . . B 2 -19.079 -7.565 -20.601 1 46.9 ? C13 2CF 601 A 1 HETATM 17 C C14 2CF . . . B 2 -20.055 -4.419 -16.644 1 49.89 ? C14 2CF 601 A 1 HETATM 18 C C15 2CF . . . B 2 -19.673 -0.138 -18.772 1 49 ? C15 2CF 601 A 1 HETATM 19 O O1A 2CF . . . B 2 -19.399 1.188 -19.209 1 47.91 ? O1A 2CF 601 A 1 HETATM 20 O O2A 2CF . . . B 2 -21.541 1.881 -18.093 1 46.52 ? O2A 2CF 601 A 1 HETATM 21 O O3A 2CF . . . B 2 -19.913 3.616 -19.038 1 47.82 ? O3A 2CF 601 A 1 HETATM 22 O OB1 2CF . . . B 2 -23.707 2.512 -20.488 1 52.33 ? OB1 2CF 601 A 1 HETATM 23 O OB2 2CF . . . B 2 -22.549 2.438 -22.715 1 40.88 ? OB2 2CF 601 A 1 HETATM 24 O OB3 2CF . . . B 2 -22.179 4.382 -21.172 1 55.73 ? OB3 2CF 601 A 1 HETATM 25 O OB4 2CF . . . B 2 -21.239 2.145 -20.606 1 46.77 ? OB4 2CF 601 A 1 HETATM 26 H H3 2CF . . . B 2 -17.876 -3.083 -16.596 1 53.2 ? H3 2CF 601 A 1 HETATM 27 H H3A 2CF . . . B 2 -16.448 -2.782 -17.206 1 53.2 ? H3A 2CF 601 A 1 HETATM 28 H H4 2CF . . . B 2 -17.833 0.499 -16.773 1 54.23 ? H4 2CF 601 A 1 HETATM 29 H H4A 2CF . . . B 2 -16.573 -0.369 -16.361 1 54.23 ? H4A 2CF 601 A 1 HETATM 30 H H4B 2CF . . . B 2 -17.991 -0.682 -15.729 1 54.23 ? H4B 2CF 601 A 1 HETATM 31 H H5 2CF . . . B 2 -17.361 -4.618 -18.275 1 50.7 ? H5 2CF 601 A 1 HETATM 32 H H5A 2CF . . . B 2 -17.188 -3.441 -19.32 1 50.7 ? H5A 2CF 601 A 1 HETATM 33 H H6 2CF . . . B 2 -19.35 -3.63 -19.791 1 54.77 ? H6 2CF 601 A 1 HETATM 34 H H8 2CF . . . B 2 -21.544 -4.067 -19.618 1 59.32 ? H8 2CF 601 A 1 HETATM 35 H H8A 2CF . . . B 2 -22.172 -3.857 -18.182 1 59.32 ? H8A 2CF 601 A 1 HETATM 36 H H9 2CF . . . B 2 -22.932 -5.882 -18.963 1 56.18 ? H9 2CF 601 A 1 HETATM 37 H H9A 2CF . . . B 2 -21.935 -6.189 -17.772 1 56.18 ? H9A 2CF 601 A 1 HETATM 38 H H10 2CF . . . B 2 -21.614 -7.01 -20.373 1 60.82 ? H10 2CF 601 A 1 HETATM 39 H H12 2CF . . . B 2 -18.48 -6.518 -18.12 1 53.4 ? H12 2CF 601 A 1 HETATM 40 H H12A 2CF . . . B 2 -18.896 -8.037 -17.954 1 53.4 ? H12A 2CF 601 A 1 HETATM 41 H H12B 2CF . . . B 2 -19.851 -6.892 -17.42 1 53.4 ? H12B 2CF 601 A 1 HETATM 42 H H13 2CF . . . B 2 -18.99 -6.849 -21.251 1 56.27 ? H13 2CF 601 A 1 HETATM 43 H H13A 2CF . . . B 2 -19.503 -8.33 -21.022 1 56.27 ? H13A 2CF 601 A 1 HETATM 44 H H13B 2CF . . . B 2 -18.199 -7.82 -20.281 1 56.27 ? H13B 2CF 601 A 1 HETATM 45 H H14 2CF . . . B 2 -20.904 -4.743 -16.303 1 59.87 ? H14 2CF 601 A 1 HETATM 46 H H14A 2CF . . . B 2 -19.83 -3.582 -16.207 1 59.87 ? H14A 2CF 601 A 1 HETATM 47 H H14B 2CF . . . B 2 -19.363 -5.075 -16.462 1 59.87 ? H14B 2CF 601 A 1 HETATM 48 H H15 2CF . . . B 2 -20.335 -0.552 -19.366 1 58.8 ? H15 2CF 601 A 1 HETATM 49 H H15A 2CF . . . B 2 -20.051 -0.117 -17.867 1 58.8 ? H15A 2CF 601 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 49 #