data_7XS6 # _model_server_result.job_id 9VLCH1hAWlylDnmnZG7w2A _model_server_result.datetime_utc '2024-11-15 19:40:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1211}' # _entry.id 7XS6 # _exptl.entry_id 7XS6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 170.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XS6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 V N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 SA N N # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 306 n n C1 H11 D12 sing 307 n n C1 H12 D12 sing 308 n n C1 H13 D12 sing 309 n n C2 C3 D12 sing 310 n n C2 H21 D12 sing 311 n n C2 H22 D12 sing 312 n n C3 C4 D12 sing 313 n n C3 H31 D12 sing 314 n n C3 H32 D12 sing 315 n n C4 C5 D12 sing 316 n n C4 H41 D12 sing 317 n n C4 H42 D12 sing 318 n n C5 C6 D12 sing 319 n n C5 H51 D12 sing 320 n n C5 H52 D12 sing 321 n n C6 C7 D12 sing 322 n n C6 H61 D12 sing 323 n n C6 H62 D12 sing 324 n n C7 C8 D12 sing 325 n n C7 H71 D12 sing 326 n n C7 H72 D12 sing 327 n n C8 C9 D12 sing 328 n n C8 H81 D12 sing 329 n n C8 H82 D12 sing 330 n n C9 C10 D12 sing 331 n n C9 H91 D12 sing 332 n n C9 H92 D12 sing 333 n n C10 C11 D12 sing 334 n n C10 H101 D12 sing 335 n n C10 H102 D12 sing 336 n n C11 C12 D12 sing 337 n n C11 H111 D12 sing 338 n n C11 H112 D12 sing 339 n n C12 H121 D12 sing 340 n n C12 H122 D12 sing 341 n n C12 H123 D12 sing 342 n n # _atom_sites.entry_id 7XS6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C14 B 1 1201 2002 C14 C14 . D 2 C14 B 1 1202 2003 C14 C14 . E 2 C14 B 1 1203 2004 C14 C14 . F 2 C14 B 1 1204 2005 C14 C14 . G 2 C14 B 1 1205 2006 C14 C14 . H 2 C14 B 1 1206 2007 C14 C14 . I 2 C14 B 1 1207 2008 C14 C14 . J 2 C14 B 1 1208 2009 C14 C14 . K 3 D12 B 1 1209 2010 D12 D12 . L 3 D12 B 1 1210 2011 D12 D12 . M 3 D12 B 1 1211 2012 D12 D12 . N 3 D12 B 1 1212 2013 D12 D12 . O 4 HP6 B 1 1213 2014 HP6 HP6 . P 4 HP6 B 1 1214 2015 HP6 HP6 . Q 4 HP6 B 1 1215 2016 HP6 HP6 . R 4 HP6 B 1 1216 2017 HP6 HP6 . S 4 HP6 B 1 1217 2018 HP6 HP6 . T 4 HP6 B 1 1218 2019 HP6 HP6 . U 4 HP6 B 1 1219 2020 HP6 HP6 . V 3 D12 B 1 1220 2021 D12 D12 . W 2 C14 B 1 1221 2002 C14 C14 . X 5 BGI B 1 1222 1 BGI LIG . Y 6 0V9 A 1 2001 2001 0V9 6OU . Z 6 0V9 A 1 2002 2001 0V9 6OU . AA 2 C14 A 1 2003 2003 C14 C14 . BA 2 C14 A 1 2004 2004 C14 C14 . CA 2 C14 A 1 2005 2005 C14 C14 . DA 2 C14 A 1 2006 2006 C14 C14 . EA 2 C14 A 1 2007 2007 C14 C14 . FA 2 C14 A 1 2008 2008 C14 C14 . GA 2 C14 A 1 2009 2009 C14 C14 . HA 3 D12 A 1 2010 2010 D12 D12 . IA 3 D12 A 1 2011 2011 D12 D12 . JA 3 D12 A 1 2012 2012 D12 D12 . KA 3 D12 A 1 2013 2013 D12 D12 . LA 4 HP6 A 1 2014 2014 HP6 HP6 . MA 4 HP6 A 1 2015 2015 HP6 HP6 . NA 4 HP6 A 1 2016 2016 HP6 HP6 . OA 4 HP6 A 1 2017 2017 HP6 HP6 . PA 4 HP6 A 1 2018 2018 HP6 HP6 . QA 4 HP6 A 1 2019 2019 HP6 HP6 . RA 4 HP6 A 1 2020 2020 HP6 HP6 . SA 3 D12 A 1 2021 2021 D12 D12 . TA 5 BGI A 1 2022 2 BGI LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . M 3 123.689 152.044 148.455 1 43.22 ? C1 D12 1211 B 1 HETATM 2 C C2 D12 . . . M 3 122.928 152.379 147.197 1 43.22 ? C2 D12 1211 B 1 HETATM 3 C C3 D12 . . . M 3 123.776 152.357 145.952 1 43.22 ? C3 D12 1211 B 1 HETATM 4 C C4 D12 . . . M 3 123.014 152.69 144.694 1 43.22 ? C4 D12 1211 B 1 HETATM 5 C C5 D12 . . . M 3 123.846 152.664 143.437 1 43.22 ? C5 D12 1211 B 1 HETATM 6 C C6 D12 . . . M 3 123.078 153.016 142.188 1 43.22 ? C6 D12 1211 B 1 HETATM 7 C C7 D12 . . . M 3 123.9 153.001 140.925 1 43.22 ? C7 D12 1211 B 1 HETATM 8 C C8 D12 . . . M 3 123.12 153.362 139.687 1 43.22 ? C8 D12 1211 B 1 HETATM 9 C C9 D12 . . . M 3 123.928 153.359 138.414 1 43.22 ? C9 D12 1211 B 1 HETATM 10 C C10 D12 . . . M 3 123.13 153.696 137.18 1 43.22 ? C10 D12 1211 B 1 HETATM 11 C C11 D12 . . . M 3 123.936 153.74 135.909 1 43.22 ? C11 D12 1211 B 1 HETATM 12 C C12 D12 . . . M 3 123.117 154.096 134.692 1 43.22 ? C12 D12 1211 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #