data_7XS6 # _model_server_result.job_id A9mXGFWAvTljXhmt4atseg _model_server_result.datetime_utc '2024-11-15 19:41:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":2001}' # _entry.id 7XS6 # _exptl.entry_id 7XS6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 689.943 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XS6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Y N N ? 6 Z N N # _chem_comp.formula 'C37 H72 N O8 P' _chem_comp.formula_weight 689.943 _chem_comp.id 0V9 _chem_comp.mon_nstd_flag . _chem_comp.name '(19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 N 0V9 sing 1 n n C5 C4 0V9 sing 2 n n C4 O4P 0V9 sing 3 n n O4P P 0V9 sing 4 n n P O2P 0V9 doub 5 n n P O1P 0V9 sing 6 n n P O3P 0V9 sing 7 n n O3P C1 0V9 sing 8 n n C1 C2 0V9 sing 9 n n C2 O2 0V9 sing 10 n n C2 C3 0V9 sing 11 n n O2 C10 0V9 sing 12 n n C3 O3 0V9 sing 13 n n O4 C10 0V9 doub 14 n n C10 C11 0V9 sing 15 n n O3 C30 0V9 sing 16 n n C12 C11 0V9 sing 17 n n C12 C13 0V9 sing 18 n n C14 C13 0V9 sing 19 n n C14 C15 0V9 sing 20 n n O5 C30 0V9 doub 21 n n C30 C31 0V9 sing 22 n n C16 C15 0V9 sing 23 n n C16 C17 0V9 sing 24 n n C19 C18 0V9 doub 25 z n C19 C20 0V9 sing 26 n n C18 C17 0V9 sing 27 n n C20 C21 0V9 sing 28 n n C31 C32 0V9 sing 29 n n C45 C44 0V9 sing 30 n n C21 C22 0V9 sing 31 n n C32 C33 0V9 sing 32 n n C33 C34 0V9 sing 33 n n C22 C23 0V9 sing 34 n n C44 C43 0V9 sing 35 n n C43 C42 0V9 sing 36 n n C34 C35 0V9 sing 37 n n C35 C36 0V9 sing 38 n n C23 C24 0V9 sing 39 n n C42 C41 0V9 sing 40 n n C36 C37 0V9 sing 41 n n C24 C25 0V9 sing 42 n n C41 C40 0V9 sing 43 n n C37 C38 0V9 sing 44 n n C40 C39 0V9 sing 45 n n C39 C38 0V9 sing 46 n n C2 H1 0V9 sing 47 n n C1 H2 0V9 sing 48 n n C1 H3 0V9 sing 49 n n N H4 0V9 sing 50 n n N H5 0V9 sing 51 n n C3 H7 0V9 sing 52 n n C3 H8 0V9 sing 53 n n C4 H9 0V9 sing 54 n n C4 H10 0V9 sing 55 n n C5 H11 0V9 sing 56 n n C5 H12 0V9 sing 57 n n C11 H13 0V9 sing 58 n n C11 H14 0V9 sing 59 n n C12 H15 0V9 sing 60 n n C12 H16 0V9 sing 61 n n C13 H17 0V9 sing 62 n n C13 H18 0V9 sing 63 n n C14 H19 0V9 sing 64 n n C14 H20 0V9 sing 65 n n C15 H21 0V9 sing 66 n n C15 H22 0V9 sing 67 n n C16 H23 0V9 sing 68 n n C16 H24 0V9 sing 69 n n C17 H25 0V9 sing 70 n n C17 H26 0V9 sing 71 n n C18 H27 0V9 sing 72 n n C19 H28 0V9 sing 73 n n C20 H29 0V9 sing 74 n n C20 H30 0V9 sing 75 n n C21 H31 0V9 sing 76 n n C21 H32 0V9 sing 77 n n C22 H33 0V9 sing 78 n n C22 H34 0V9 sing 79 n n C23 H35 0V9 sing 80 n n C23 H36 0V9 sing 81 n n C24 H37 0V9 sing 82 n n C24 H38 0V9 sing 83 n n C25 H39 0V9 sing 84 n n C25 H40 0V9 sing 85 n n C25 H41 0V9 sing 86 n n C31 H42 0V9 sing 87 n n C31 H43 0V9 sing 88 n n C32 H44 0V9 sing 89 n n C32 H45 0V9 sing 90 n n C33 H46 0V9 sing 91 n n C33 H47 0V9 sing 92 n n C34 H48 0V9 sing 93 n n C34 H49 0V9 sing 94 n n C35 H50 0V9 sing 95 n n C35 H51 0V9 sing 96 n n C36 H52 0V9 sing 97 n n C36 H53 0V9 sing 98 n n C37 H54 0V9 sing 99 n n C37 H55 0V9 sing 100 n n C38 H56 0V9 sing 101 n n C38 H57 0V9 sing 102 n n C39 H58 0V9 sing 103 n n C39 H59 0V9 sing 104 n n C40 H60 0V9 sing 105 n n C40 H61 0V9 sing 106 n n C41 H62 0V9 sing 107 n n C41 H63 0V9 sing 108 n n C42 H64 0V9 sing 109 n n C42 H65 0V9 sing 110 n n C43 H66 0V9 sing 111 n n C43 H67 0V9 sing 112 n n C44 H68 0V9 sing 113 n n C44 H69 0V9 sing 114 n n C45 H70 0V9 sing 115 n n C45 H71 0V9 sing 116 n n C45 H72 0V9 sing 117 n n O1P H73 0V9 sing 118 n n # _atom_sites.entry_id 7XS6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C14 B 1 1201 2002 C14 C14 . D 2 C14 B 1 1202 2003 C14 C14 . E 2 C14 B 1 1203 2004 C14 C14 . F 2 C14 B 1 1204 2005 C14 C14 . G 2 C14 B 1 1205 2006 C14 C14 . H 2 C14 B 1 1206 2007 C14 C14 . I 2 C14 B 1 1207 2008 C14 C14 . J 2 C14 B 1 1208 2009 C14 C14 . K 3 D12 B 1 1209 2010 D12 D12 . L 3 D12 B 1 1210 2011 D12 D12 . M 3 D12 B 1 1211 2012 D12 D12 . N 3 D12 B 1 1212 2013 D12 D12 . O 4 HP6 B 1 1213 2014 HP6 HP6 . P 4 HP6 B 1 1214 2015 HP6 HP6 . Q 4 HP6 B 1 1215 2016 HP6 HP6 . R 4 HP6 B 1 1216 2017 HP6 HP6 . S 4 HP6 B 1 1217 2018 HP6 HP6 . T 4 HP6 B 1 1218 2019 HP6 HP6 . U 4 HP6 B 1 1219 2020 HP6 HP6 . V 3 D12 B 1 1220 2021 D12 D12 . W 2 C14 B 1 1221 2002 C14 C14 . X 5 BGI B 1 1222 1 BGI LIG . Y 6 0V9 A 1 2001 2001 0V9 6OU . Z 6 0V9 A 1 2002 2001 0V9 6OU . AA 2 C14 A 1 2003 2003 C14 C14 . BA 2 C14 A 1 2004 2004 C14 C14 . CA 2 C14 A 1 2005 2005 C14 C14 . DA 2 C14 A 1 2006 2006 C14 C14 . EA 2 C14 A 1 2007 2007 C14 C14 . FA 2 C14 A 1 2008 2008 C14 C14 . GA 2 C14 A 1 2009 2009 C14 C14 . HA 3 D12 A 1 2010 2010 D12 D12 . IA 3 D12 A 1 2011 2011 D12 D12 . JA 3 D12 A 1 2012 2012 D12 D12 . KA 3 D12 A 1 2013 2013 D12 D12 . LA 4 HP6 A 1 2014 2014 HP6 HP6 . MA 4 HP6 A 1 2015 2015 HP6 HP6 . NA 4 HP6 A 1 2016 2016 HP6 HP6 . OA 4 HP6 A 1 2017 2017 HP6 HP6 . PA 4 HP6 A 1 2018 2018 HP6 HP6 . QA 4 HP6 A 1 2019 2019 HP6 HP6 . RA 4 HP6 A 1 2020 2020 HP6 HP6 . SA 3 D12 A 1 2021 2021 D12 D12 . TA 5 BGI A 1 2022 2 BGI LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 0V9 . . . Y 6 126.058 131.679 137.361 1 30.03 ? C2 0V9 2001 A 1 HETATM 2 C C1 0V9 . . . Y 6 125.197 131.401 138.573 1 30.03 ? C1 0V9 2001 A 1 HETATM 3 N N 0V9 . . . Y 6 127.525 132.535 145.689 1 30.03 ? N 0V9 2001 A 1 HETATM 4 C C3 0V9 . . . Y 6 127.164 130.669 137.16 1 30.03 ? C3 0V9 2001 A 1 HETATM 5 C C4 0V9 . . . Y 6 126.395 131.9 143.602 1 30.03 ? C4 0V9 2001 A 1 HETATM 6 C C5 0V9 . . . Y 6 127.673 132.37 144.245 1 30.03 ? C5 0V9 2001 A 1 HETATM 7 C C10 0V9 . . . Y 6 125.703 132.203 135.055 1 30.03 ? C10 0V9 2001 A 1 HETATM 8 C C11 0V9 . . . Y 6 125.007 131.733 133.812 1 30.03 ? C11 0V9 2001 A 1 HETATM 9 C C12 0V9 . . . Y 6 125.578 132.322 132.565 1 30.03 ? C12 0V9 2001 A 1 HETATM 10 C C13 0V9 . . . Y 6 125.102 131.618 131.307 1 30.03 ? C13 0V9 2001 A 1 HETATM 11 C C14 0V9 . . . Y 6 125.418 130.143 131.255 1 30.03 ? C14 0V9 2001 A 1 HETATM 12 C C15 0V9 . . . Y 6 125.279 129.54 129.881 1 30.03 ? C15 0V9 2001 A 1 HETATM 13 C C16 0V9 . . . Y 6 126.353 129.985 128.897 1 30.03 ? C16 0V9 2001 A 1 HETATM 14 C C17 0V9 . . . Y 6 125.897 130.036 127.472 1 30.03 ? C17 0V9 2001 A 1 HETATM 15 C C18 0V9 . . . Y 6 126.938 130.486 126.491 1 30.03 ? C18 0V9 2001 A 1 HETATM 16 C C19 0V9 . . . Y 6 127.657 131.585 126.419 1 30.03 ? C19 0V9 2001 A 1 HETATM 17 C C20 0V9 . . . Y 6 127.914 132.671 127.419 1 30.03 ? C20 0V9 2001 A 1 HETATM 18 C C21 0V9 . . . Y 6 126.701 133.421 127.871 1 30.03 ? C21 0V9 2001 A 1 HETATM 19 C C22 0V9 . . . Y 6 126.997 134.46 128.938 1 30.03 ? C22 0V9 2001 A 1 HETATM 20 C C23 0V9 . . . Y 6 125.78 135.084 129.566 1 30.03 ? C23 0V9 2001 A 1 HETATM 21 C C24 0V9 . . . Y 6 126.091 136.061 130.671 1 30.03 ? C24 0V9 2001 A 1 HETATM 22 C C25 0V9 . . . Y 6 124.877 136.588 131.392 1 30.03 ? C25 0V9 2001 A 1 HETATM 23 C C30 0V9 . . . Y 6 127.325 128.33 136.833 1 30.03 ? C30 0V9 2001 A 1 HETATM 24 C C31 0V9 . . . Y 6 128.068 128.655 135.567 1 30.03 ? C31 0V9 2001 A 1 HETATM 25 C C32 0V9 . . . Y 6 128.957 127.537 135.133 1 30.03 ? C32 0V9 2001 A 1 HETATM 26 C C33 0V9 . . . Y 6 129.636 127.763 133.787 1 30.03 ? C33 0V9 2001 A 1 HETATM 27 C C34 0V9 . . . Y 6 128.766 127.532 132.573 1 30.03 ? C34 0V9 2001 A 1 HETATM 28 C C35 0V9 . . . Y 6 129.539 127.05 131.365 1 30.03 ? C35 0V9 2001 A 1 HETATM 29 C C36 0V9 . . . Y 6 128.829 127.209 130.042 1 30.03 ? C36 0V9 2001 A 1 HETATM 30 C C37 0V9 . . . Y 6 127.523 126.47 129.92 1 30.03 ? C37 0V9 2001 A 1 HETATM 31 C C38 0V9 . . . Y 6 127.644 124.97 129.894 1 30.03 ? C38 0V9 2001 A 1 HETATM 32 C C39 0V9 . . . Y 6 126.315 124.263 129.919 1 30.03 ? C39 0V9 2001 A 1 HETATM 33 C C40 0V9 . . . Y 6 125.339 124.897 130.872 1 30.03 ? C40 0V9 2001 A 1 HETATM 34 C C41 0V9 . . . Y 6 124.369 123.951 131.525 1 30.03 ? C41 0V9 2001 A 1 HETATM 35 C C42 0V9 . . . Y 6 123.54 124.612 132.591 1 30.03 ? C42 0V9 2001 A 1 HETATM 36 C C43 0V9 . . . Y 6 124.343 125.501 133.5 1 30.03 ? C43 0V9 2001 A 1 HETATM 37 C C44 0V9 . . . Y 6 123.559 126.305 134.495 1 30.03 ? C44 0V9 2001 A 1 HETATM 38 C C45 0V9 . . . Y 6 124.417 127.282 135.255 1 30.03 ? C45 0V9 2001 A 1 HETATM 39 O O4 0V9 . . . Y 6 126.59 133.013 135.074 1 30.03 ? O4 0V9 2001 A 1 HETATM 40 O O5 0V9 . . . Y 6 127.382 127.27 137.392 1 30.03 ? O5 0V9 2001 A 1 HETATM 41 O O2 0V9 . . . Y 6 125.225 131.641 136.174 1 30.03 ? O2 0V9 2001 A 1 HETATM 42 O O3 0V9 . . . Y 6 126.594 129.348 137.279 1 30.03 ? O3 0V9 2001 A 1 HETATM 43 O O1P 0V9 . . . Y 6 124.95 130.039 141.482 1 30.03 ? O1P 0V9 2001 A 1 HETATM 44 O O2P 0V9 . . . Y 6 124.319 132.555 141.341 1 30.03 ? O2P 0V9 2001 A 1 HETATM 45 O O3P 0V9 . . . Y 6 126.016 131.559 139.76 1 30.03 ? O3P 0V9 2001 A 1 HETATM 46 O O4P 0V9 . . . Y 6 126.584 131.838 142.165 1 30.03 ? O4P 0V9 2001 A 1 HETATM 47 P P 0V9 . . . Y 6 125.345 131.464 141.216 1 30.03 ? P 0V9 2001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #