data_7XS6
#
_model_server_result.job_id            t1q93wmMquO9jtQtu3qdFA 
_model_server_result.datetime_utc      '2024-11-15 19:28:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xs6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":2002}' 
#
_entry.id    7XS6 
#
_exptl.entry_id    7XS6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              689.943 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XS6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XS6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 Y N N 
? 6 Z N N 
#
_chem_comp.formula           'C37 H72 N O8 P' 
_chem_comp.formula_weight    689.943 
_chem_comp.id                0V9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 N 0V9 sing 1 n n 
C5 C4 0V9 sing 2 n n 
C4 O4P 0V9 sing 3 n n 
O4P P 0V9 sing 4 n n 
P O2P 0V9 doub 5 n n 
P O1P 0V9 sing 6 n n 
P O3P 0V9 sing 7 n n 
O3P C1 0V9 sing 8 n n 
C1 C2 0V9 sing 9 n n 
C2 O2 0V9 sing 10 n n 
C2 C3 0V9 sing 11 n n 
O2 C10 0V9 sing 12 n n 
C3 O3 0V9 sing 13 n n 
O4 C10 0V9 doub 14 n n 
C10 C11 0V9 sing 15 n n 
O3 C30 0V9 sing 16 n n 
C12 C11 0V9 sing 17 n n 
C12 C13 0V9 sing 18 n n 
C14 C13 0V9 sing 19 n n 
C14 C15 0V9 sing 20 n n 
O5 C30 0V9 doub 21 n n 
C30 C31 0V9 sing 22 n n 
C16 C15 0V9 sing 23 n n 
C16 C17 0V9 sing 24 n n 
C19 C18 0V9 doub 25 z n 
C19 C20 0V9 sing 26 n n 
C18 C17 0V9 sing 27 n n 
C20 C21 0V9 sing 28 n n 
C31 C32 0V9 sing 29 n n 
C45 C44 0V9 sing 30 n n 
C21 C22 0V9 sing 31 n n 
C32 C33 0V9 sing 32 n n 
C33 C34 0V9 sing 33 n n 
C22 C23 0V9 sing 34 n n 
C44 C43 0V9 sing 35 n n 
C43 C42 0V9 sing 36 n n 
C34 C35 0V9 sing 37 n n 
C35 C36 0V9 sing 38 n n 
C23 C24 0V9 sing 39 n n 
C42 C41 0V9 sing 40 n n 
C36 C37 0V9 sing 41 n n 
C24 C25 0V9 sing 42 n n 
C41 C40 0V9 sing 43 n n 
C37 C38 0V9 sing 44 n n 
C40 C39 0V9 sing 45 n n 
C39 C38 0V9 sing 46 n n 
C2 H1 0V9 sing 47 n n 
C1 H2 0V9 sing 48 n n 
C1 H3 0V9 sing 49 n n 
N H4 0V9 sing 50 n n 
N H5 0V9 sing 51 n n 
C3 H7 0V9 sing 52 n n 
C3 H8 0V9 sing 53 n n 
C4 H9 0V9 sing 54 n n 
C4 H10 0V9 sing 55 n n 
C5 H11 0V9 sing 56 n n 
C5 H12 0V9 sing 57 n n 
C11 H13 0V9 sing 58 n n 
C11 H14 0V9 sing 59 n n 
C12 H15 0V9 sing 60 n n 
C12 H16 0V9 sing 61 n n 
C13 H17 0V9 sing 62 n n 
C13 H18 0V9 sing 63 n n 
C14 H19 0V9 sing 64 n n 
C14 H20 0V9 sing 65 n n 
C15 H21 0V9 sing 66 n n 
C15 H22 0V9 sing 67 n n 
C16 H23 0V9 sing 68 n n 
C16 H24 0V9 sing 69 n n 
C17 H25 0V9 sing 70 n n 
C17 H26 0V9 sing 71 n n 
C18 H27 0V9 sing 72 n n 
C19 H28 0V9 sing 73 n n 
C20 H29 0V9 sing 74 n n 
C20 H30 0V9 sing 75 n n 
C21 H31 0V9 sing 76 n n 
C21 H32 0V9 sing 77 n n 
C22 H33 0V9 sing 78 n n 
C22 H34 0V9 sing 79 n n 
C23 H35 0V9 sing 80 n n 
C23 H36 0V9 sing 81 n n 
C24 H37 0V9 sing 82 n n 
C24 H38 0V9 sing 83 n n 
C25 H39 0V9 sing 84 n n 
C25 H40 0V9 sing 85 n n 
C25 H41 0V9 sing 86 n n 
C31 H42 0V9 sing 87 n n 
C31 H43 0V9 sing 88 n n 
C32 H44 0V9 sing 89 n n 
C32 H45 0V9 sing 90 n n 
C33 H46 0V9 sing 91 n n 
C33 H47 0V9 sing 92 n n 
C34 H48 0V9 sing 93 n n 
C34 H49 0V9 sing 94 n n 
C35 H50 0V9 sing 95 n n 
C35 H51 0V9 sing 96 n n 
C36 H52 0V9 sing 97 n n 
C36 H53 0V9 sing 98 n n 
C37 H54 0V9 sing 99 n n 
C37 H55 0V9 sing 100 n n 
C38 H56 0V9 sing 101 n n 
C38 H57 0V9 sing 102 n n 
C39 H58 0V9 sing 103 n n 
C39 H59 0V9 sing 104 n n 
C40 H60 0V9 sing 105 n n 
C40 H61 0V9 sing 106 n n 
C41 H62 0V9 sing 107 n n 
C41 H63 0V9 sing 108 n n 
C42 H64 0V9 sing 109 n n 
C42 H65 0V9 sing 110 n n 
C43 H66 0V9 sing 111 n n 
C43 H67 0V9 sing 112 n n 
C44 H68 0V9 sing 113 n n 
C44 H69 0V9 sing 114 n n 
C45 H70 0V9 sing 115 n n 
C45 H71 0V9 sing 116 n n 
C45 H72 0V9 sing 117 n n 
O1P H73 0V9 sing 118 n n 
#
_atom_sites.entry_id                     7XS6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C14 B 1 1201 2002 C14 C14 . 
D 2 C14 B 1 1202 2003 C14 C14 . 
E 2 C14 B 1 1203 2004 C14 C14 . 
F 2 C14 B 1 1204 2005 C14 C14 . 
G 2 C14 B 1 1205 2006 C14 C14 . 
H 2 C14 B 1 1206 2007 C14 C14 . 
I 2 C14 B 1 1207 2008 C14 C14 . 
J 2 C14 B 1 1208 2009 C14 C14 . 
K 3 D12 B 1 1209 2010 D12 D12 . 
L 3 D12 B 1 1210 2011 D12 D12 . 
M 3 D12 B 1 1211 2012 D12 D12 . 
N 3 D12 B 1 1212 2013 D12 D12 . 
O 4 HP6 B 1 1213 2014 HP6 HP6 . 
P 4 HP6 B 1 1214 2015 HP6 HP6 . 
Q 4 HP6 B 1 1215 2016 HP6 HP6 . 
R 4 HP6 B 1 1216 2017 HP6 HP6 . 
S 4 HP6 B 1 1217 2018 HP6 HP6 . 
T 4 HP6 B 1 1218 2019 HP6 HP6 . 
U 4 HP6 B 1 1219 2020 HP6 HP6 . 
V 3 D12 B 1 1220 2021 D12 D12 . 
W 2 C14 B 1 1221 2002 C14 C14 . 
X 5 BGI B 1 1222 1 BGI LIG . 
Y 6 0V9 A 1 2001 2001 0V9 6OU . 
Z 6 0V9 A 1 2002 2001 0V9 6OU . 
AA 2 C14 A 1 2003 2003 C14 C14 . 
BA 2 C14 A 1 2004 2004 C14 C14 . 
CA 2 C14 A 1 2005 2005 C14 C14 . 
DA 2 C14 A 1 2006 2006 C14 C14 . 
EA 2 C14 A 1 2007 2007 C14 C14 . 
FA 2 C14 A 1 2008 2008 C14 C14 . 
GA 2 C14 A 1 2009 2009 C14 C14 . 
HA 3 D12 A 1 2010 2010 D12 D12 . 
IA 3 D12 A 1 2011 2011 D12 D12 . 
JA 3 D12 A 1 2012 2012 D12 D12 . 
KA 3 D12 A 1 2013 2013 D12 D12 . 
LA 4 HP6 A 1 2014 2014 HP6 HP6 . 
MA 4 HP6 A 1 2015 2015 HP6 HP6 . 
NA 4 HP6 A 1 2016 2016 HP6 HP6 . 
OA 4 HP6 A 1 2017 2017 HP6 HP6 . 
PA 4 HP6 A 1 2018 2018 HP6 HP6 . 
QA 4 HP6 A 1 2019 2019 HP6 HP6 . 
RA 4 HP6 A 1 2020 2020 HP6 HP6 . 
SA 3 D12 A 1 2021 2021 D12 D12 . 
TA 5 BGI A 1 2022 2 BGI LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 0V9 . . . Z 6 133.162 127.488 137.365 1 18.92 ? C2 0V9 2002 A 1 
HETATM 2 C C1 0V9 . . . Z 6 134.026 127.757 138.576 1 18.92 ? C1 0V9 2002 A 1 
HETATM 3 N N 0V9 . . . Z 6 131.672 126.671 145.689 1 18.92 ? N 0V9 2002 A 1 
HETATM 4 C C3 0V9 . . . Z 6 132.059 128.501 137.175 1 18.92 ? C3 0V9 2002 A 1 
HETATM 5 C C4 0V9 . . . Z 6 132.807 127.299 143.604 1 18.92 ? C4 0V9 2002 A 1 
HETATM 6 C C5 0V9 . . . Z 6 131.527 126.832 144.243 1 18.92 ? C5 0V9 2002 A 1 
HETATM 7 C C10 0V9 . . . Z 6 133.502 126.985 135.052 1 18.92 ? C10 0V9 2002 A 1 
HETATM 8 C C11 0V9 . . . Z 6 134.195 127.461 133.809 1 18.92 ? C11 0V9 2002 A 1 
HETATM 9 C C12 0V9 . . . Z 6 133.619 126.877 132.562 1 18.92 ? C12 0V9 2002 A 1 
HETATM 10 C C13 0V9 . . . Z 6 134.097 127.581 131.304 1 18.92 ? C13 0V9 2002 A 1 
HETATM 11 C C14 0V9 . . . Z 6 133.781 129.057 131.252 1 18.92 ? C14 0V9 2002 A 1 
HETATM 12 C C15 0V9 . . . Z 6 133.921 129.661 129.88 1 18.92 ? C15 0V9 2002 A 1 
HETATM 13 C C16 0V9 . . . Z 6 132.849 129.214 128.895 1 18.92 ? C16 0V9 2002 A 1 
HETATM 14 C C17 0V9 . . . Z 6 133.304 129.169 127.47 1 18.92 ? C17 0V9 2002 A 1 
HETATM 15 C C18 0V9 . . . Z 6 132.265 128.72 126.487 1 18.92 ? C18 0V9 2002 A 1 
HETATM 16 C C19 0V9 . . . Z 6 131.549 127.619 126.409 1 18.92 ? C19 0V9 2002 A 1 
HETATM 17 C C20 0V9 . . . Z 6 131.291 126.529 127.405 1 18.92 ? C20 0V9 2002 A 1 
HETATM 18 C C21 0V9 . . . Z 6 132.504 125.783 127.863 1 18.92 ? C21 0V9 2002 A 1 
HETATM 19 C C22 0V9 . . . Z 6 132.205 124.743 128.928 1 18.92 ? C22 0V9 2002 A 1 
HETATM 20 C C23 0V9 . . . Z 6 133.421 124.12 129.561 1 18.92 ? C23 0V9 2002 A 1 
HETATM 21 C C24 0V9 . . . Z 6 133.106 123.142 130.665 1 18.92 ? C24 0V9 2002 A 1 
HETATM 22 C C25 0V9 . . . Z 6 134.318 122.616 131.39 1 18.92 ? C25 0V9 2002 A 1 
HETATM 23 C C30 0V9 . . . Z 6 131.901 130.847 136.903 1 18.92 ? C30 0V9 2002 A 1 
HETATM 24 C C31 0V9 . . . Z 6 131.158 130.549 135.631 1 18.92 ? C31 0V9 2002 A 1 
HETATM 25 C C32 0V9 . . . Z 6 130.232 131.655 135.247 1 18.92 ? C32 0V9 2002 A 1 
HETATM 26 C C33 0V9 . . . Z 6 129.6 131.488 133.871 1 18.92 ? C33 0V9 2002 A 1 
HETATM 27 C C34 0V9 . . . Z 6 130.517 131.76 132.702 1 18.92 ? C34 0V9 2002 A 1 
HETATM 28 C C35 0V9 . . . Z 6 129.816 132.401 131.526 1 18.92 ? C35 0V9 2002 A 1 
HETATM 29 C C36 0V9 . . . Z 6 130.517 132.241 130.2 1 18.92 ? C36 0V9 2002 A 1 
HETATM 30 C C37 0V9 . . . Z 6 131.881 132.874 130.104 1 18.92 ? C37 0V9 2002 A 1 
HETATM 31 C C38 0V9 . . . Z 6 131.881 134.379 130.044 1 18.92 ? C38 0V9 2002 A 1 
HETATM 32 C C39 0V9 . . . Z 6 133.202 134.964 129.611 1 18.92 ? C39 0V9 2002 A 1 
HETATM 33 C C40 0V9 . . . Z 6 134.365 134.566 130.48 1 18.92 ? C40 0V9 2002 A 1 
HETATM 34 C C41 0V9 . . . Z 6 134.491 135.368 131.746 1 18.92 ? C41 0V9 2002 A 1 
HETATM 35 C C42 0V9 . . . Z 6 135.313 134.712 132.822 1 18.92 ? C42 0V9 2002 A 1 
HETATM 36 C C43 0V9 . . . Z 6 134.714 133.437 133.346 1 18.92 ? C43 0V9 2002 A 1 
HETATM 37 C C44 0V9 . . . Z 6 135.419 132.84 134.53 1 18.92 ? C44 0V9 2002 A 1 
HETATM 38 C C45 0V9 . . . Z 6 134.789 131.553 134.997 1 18.92 ? C45 0V9 2002 A 1 
HETATM 39 O O4 0V9 . . . Z 6 132.61 126.181 135.068 1 18.92 ? O4 0V9 2002 A 1 
HETATM 40 O O5 0V9 . . . Z 6 131.845 131.895 137.484 1 18.92 ? O5 0V9 2002 A 1 
HETATM 41 O O2 0V9 . . . Z 6 133.99 127.534 136.174 1 18.92 ? O2 0V9 2002 A 1 
HETATM 42 O O3 0V9 . . . Z 6 132.63 129.818 137.327 1 18.92 ? O3 0V9 2002 A 1 
HETATM 43 O O1P 0V9 . . . Z 6 134.261 129.15 141.48 1 18.92 ? O1P 0V9 2002 A 1 
HETATM 44 O O2P 0V9 . . . Z 6 134.89 126.633 141.354 1 18.92 ? O2P 0V9 2002 A 1 
HETATM 45 O O3P 0V9 . . . Z 6 133.201 127.622 139.761 1 18.92 ? O3P 0V9 2002 A 1 
HETATM 46 O O4P 0V9 . . . Z 6 132.622 127.359 142.166 1 18.92 ? O4P 0V9 2002 A 1 
HETATM 47 P P 0V9 . . . Z 6 133.866 127.724 141.219 1 18.92 ? P 0V9 2002 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           47 
#