data_7XT8 # _model_server_result.job_id qmVEvjyo6NW2r5X0PxcbEw _model_server_result.datetime_utc '2024-10-20 07:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7XT8 # _exptl.entry_id 7XT8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XT8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 N CYS 22 1_555 D SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 100 N CYS 99 1_555 D SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 232 R CYS 92 1_555 E SG CYS 323 R CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7XT8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 1 CLR CLR . G 6 CLR R 1 402 2 CLR CLR . H 6 CLR R 1 403 3 CLR CLR . I 6 CLR R 1 404 4 CLR CLR . J 6 CLR R 1 405 5 CLR CLR . K 7 PLM R 1 406 6 PLM PLM . L 7 PLM R 1 407 7 PLM PLM . M 8 SRO R 1 408 1 SRO SRO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 99.026 104.461 100.164 1 51.79 ? C1 CLR 401 R 1 HETATM 2 C C2 CLR . . . F 6 97.991 104.448 99.022 1 51.79 ? C2 CLR 401 R 1 HETATM 3 C C3 CLR . . . F 6 98.483 103.601 97.847 1 51.79 ? C3 CLR 401 R 1 HETATM 4 C C4 CLR . . . F 6 98.744 102.188 98.334 1 51.79 ? C4 CLR 401 R 1 HETATM 5 C C5 CLR . . . F 6 99.669 102.152 99.525 1 51.79 ? C5 CLR 401 R 1 HETATM 6 C C6 CLR . . . F 6 100.481 101.127 99.632 1 51.79 ? C6 CLR 401 R 1 HETATM 7 C C7 CLR . . . F 6 101.626 101.131 100.6 1 51.79 ? C7 CLR 401 R 1 HETATM 8 C C8 CLR . . . F 6 101.284 101.828 101.892 1 51.79 ? C8 CLR 401 R 1 HETATM 9 C C9 CLR . . . F 6 100.69 103.224 101.576 1 51.79 ? C9 CLR 401 R 1 HETATM 10 C C10 CLR . . . F 6 99.405 103.081 100.701 1 51.79 ? C10 CLR 401 R 1 HETATM 11 C C11 CLR . . . F 6 100.44 103.971 102.835 1 51.79 ? C11 CLR 401 R 1 HETATM 12 C C12 CLR . . . F 6 101.614 104.115 103.728 1 51.79 ? C12 CLR 401 R 1 HETATM 13 C C13 CLR . . . F 6 102.244 102.738 104.052 1 51.79 ? C13 CLR 401 R 1 HETATM 14 C C14 CLR . . . F 6 102.548 102.073 102.697 1 51.79 ? C14 CLR 401 R 1 HETATM 15 C C15 CLR . . . F 6 103.359 100.815 103.057 1 51.79 ? C15 CLR 401 R 1 HETATM 16 C C16 CLR . . . F 6 104.216 101.393 104.28 1 51.79 ? C16 CLR 401 R 1 HETATM 17 C C17 CLR . . . F 6 103.607 102.767 104.644 1 51.79 ? C17 CLR 401 R 1 HETATM 18 C C18 CLR . . . F 6 101.294 101.909 104.928 1 51.79 ? C18 CLR 401 R 1 HETATM 19 C C19 CLR . . . F 6 98.226 102.535 101.49 1 51.79 ? C19 CLR 401 R 1 HETATM 20 C C20 CLR . . . F 6 103.674 102.973 106.183 1 51.79 ? C20 CLR 401 R 1 HETATM 21 C C21 CLR . . . F 6 103.072 104.315 106.578 1 51.79 ? C21 CLR 401 R 1 HETATM 22 C C22 CLR . . . F 6 105.141 102.94 106.604 1 51.79 ? C22 CLR 401 R 1 HETATM 23 C C23 CLR . . . F 6 105.474 101.664 107.376 1 51.79 ? C23 CLR 401 R 1 HETATM 24 C C24 CLR . . . F 6 106.81 101.125 106.898 1 51.79 ? C24 CLR 401 R 1 HETATM 25 C C25 CLR . . . F 6 107.087 99.783 107.556 1 51.79 ? C25 CLR 401 R 1 HETATM 26 C C26 CLR . . . F 6 108.341 99.168 106.937 1 51.79 ? C26 CLR 401 R 1 HETATM 27 C C27 CLR . . . F 6 107.301 99.973 109.055 1 51.79 ? C27 CLR 401 R 1 HETATM 28 O O1 CLR . . . F 6 97.503 103.578 96.842 1 51.79 ? O1 CLR 401 R 1 HETATM 29 H H11 CLR . . . F 6 99.929 104.944 99.798 1 51.79 ? H11 CLR 401 R 1 HETATM 30 H H12 CLR . . . F 6 98.619 105.051 100.978 1 51.79 ? H12 CLR 401 R 1 HETATM 31 H H21 CLR . . . F 6 97.058 104.036 99.392 1 51.79 ? H21 CLR 401 R 1 HETATM 32 H H22 CLR . . . F 6 97.826 105.466 98.681 1 51.79 ? H22 CLR 401 R 1 HETATM 33 H H3 CLR . . . F 6 99.401 104.024 97.456 1 51.79 ? H3 CLR 401 R 1 HETATM 34 H H41 CLR . . . F 6 97.796 101.731 98.609 1 51.79 ? H41 CLR 401 R 1 HETATM 35 H H42 CLR . . . F 6 99.191 101.62 97.527 1 51.79 ? H42 CLR 401 R 1 HETATM 36 H H6 CLR . . . F 6 100.305 100.248 99.027 1 51.79 ? H6 CLR 401 R 1 HETATM 37 H H71 CLR . . . F 6 101.901 100.106 100.818 1 51.79 ? H71 CLR 401 R 1 HETATM 38 H H72 CLR . . . F 6 102.468 101.635 100.145 1 51.79 ? H72 CLR 401 R 1 HETATM 39 H H8 CLR . . . F 6 100.583 101.219 102.443 1 51.79 ? H8 CLR 401 R 1 HETATM 40 H H9 CLR . . . F 6 101.428 103.776 101.001 1 51.79 ? H9 CLR 401 R 1 HETATM 41 H H111 CLR . . . F 6 100.104 104.971 102.578 1 51.79 ? H111 CLR 401 R 1 HETATM 42 H H112 CLR . . . F 6 99.658 103.48 103.395 1 51.79 ? H112 CLR 401 R 1 HETATM 43 H H121 CLR . . . F 6 102.354 104.738 103.241 1 51.79 ? H121 CLR 401 R 1 HETATM 44 H H122 CLR . . . F 6 101.29 104.588 104.64 1 51.79 ? H122 CLR 401 R 1 HETATM 45 H H14 CLR . . . F 6 103.188 102.738 102.128 1 51.79 ? H14 CLR 401 R 1 HETATM 46 H H151 CLR . . . F 6 104.003 100.516 102.235 1 51.79 ? H151 CLR 401 R 1 HETATM 47 H H152 CLR . . . F 6 102.713 100.007 103.375 1 51.79 ? H152 CLR 401 R 1 HETATM 48 H H161 CLR . . . F 6 104.143 100.717 105.124 1 51.79 ? H161 CLR 401 R 1 HETATM 49 H H162 CLR . . . F 6 105.251 101.513 103.983 1 51.79 ? H162 CLR 401 R 1 HETATM 50 H H17 CLR . . . F 6 104.181 103.545 104.157 1 51.79 ? H17 CLR 401 R 1 HETATM 51 H H181 CLR . . . F 6 101.76 100.964 105.197 1 51.79 ? H181 CLR 401 R 1 HETATM 52 H H182 CLR . . . F 6 101.069 102.458 105.834 1 51.79 ? H182 CLR 401 R 1 HETATM 53 H H183 CLR . . . F 6 100.361 101.712 104.413 1 51.79 ? H183 CLR 401 R 1 HETATM 54 H H191 CLR . . . F 6 97.832 103.306 102.138 1 51.79 ? H191 CLR 401 R 1 HETATM 55 H H192 CLR . . . F 6 98.537 101.685 102.09 1 51.79 ? H192 CLR 401 R 1 HETATM 56 H H193 CLR . . . F 6 97.447 102.218 100.801 1 51.79 ? H193 CLR 401 R 1 HETATM 57 H H20 CLR . . . F 6 103.139 102.186 106.69 1 51.79 ? H20 CLR 401 R 1 HETATM 58 H H211 CLR . . . F 6 101.995 104.222 106.662 1 51.79 ? H211 CLR 401 R 1 HETATM 59 H H212 CLR . . . F 6 103.466 104.633 107.536 1 51.79 ? H212 CLR 401 R 1 HETATM 60 H H213 CLR . . . F 6 103.315 105.057 105.821 1 51.79 ? H213 CLR 401 R 1 HETATM 61 H H221 CLR . . . F 6 105.769 102.995 105.718 1 51.79 ? H221 CLR 401 R 1 HETATM 62 H H222 CLR . . . F 6 105.364 103.795 107.236 1 51.79 ? H222 CLR 401 R 1 HETATM 63 H H231 CLR . . . F 6 105.534 101.897 108.434 1 51.79 ? H231 CLR 401 R 1 HETATM 64 H H232 CLR . . . F 6 104.711 100.909 107.219 1 51.79 ? H232 CLR 401 R 1 HETATM 65 H H241 CLR . . . F 6 106.782 100.995 105.823 1 51.79 ? H241 CLR 401 R 1 HETATM 66 H H242 CLR . . . F 6 107.596 101.825 107.155 1 51.79 ? H242 CLR 401 R 1 HETATM 67 H H25 CLR . . . F 6 106.245 99.122 107.394 1 51.79 ? H25 CLR 401 R 1 HETATM 68 H H261 CLR . . . F 6 108.227 99.122 105.857 1 51.79 ? H261 CLR 401 R 1 HETATM 69 H H262 CLR . . . F 6 108.483 98.165 107.329 1 51.79 ? H262 CLR 401 R 1 HETATM 70 H H263 CLR . . . F 6 109.204 99.779 107.184 1 51.79 ? H263 CLR 401 R 1 HETATM 71 H H271 CLR . . . F 6 106.407 99.666 109.59 1 51.79 ? H271 CLR 401 R 1 HETATM 72 H H272 CLR . . . F 6 108.139 99.37 109.378 1 51.79 ? H272 CLR 401 R 1 HETATM 73 H H273 CLR . . . F 6 107.507 101.021 109.265 1 51.79 ? H273 CLR 401 R 1 HETATM 74 H H1 CLR . . . F 6 97.53 104.386 96.359 1 51.79 ? H1 CLR 401 R 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 74 #