data_7XT8 # _model_server_result.job_id ps1y0TknFJucs2ap-jz0WA _model_server_result.datetime_utc '2024-10-20 07:36:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":405}' # _entry.id 7XT8 # _exptl.entry_id 7XT8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XT8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 N CYS 22 1_555 D SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 100 N CYS 99 1_555 D SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 232 R CYS 92 1_555 E SG CYS 323 R CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7XT8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 1 CLR CLR . G 6 CLR R 1 402 2 CLR CLR . H 6 CLR R 1 403 3 CLR CLR . I 6 CLR R 1 404 4 CLR CLR . J 6 CLR R 1 405 5 CLR CLR . K 7 PLM R 1 406 6 PLM PLM . L 7 PLM R 1 407 7 PLM PLM . M 8 SRO R 1 408 1 SRO SRO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . J 6 83.094 123.594 89.111 1 50.95 ? C1 CLR 405 R 1 HETATM 2 C C2 CLR . . . J 6 82.373 124.055 87.829 1 50.95 ? C2 CLR 405 R 1 HETATM 3 C C3 CLR . . . J 6 83.348 124.722 86.856 1 50.95 ? C3 CLR 405 R 1 HETATM 4 C C4 CLR . . . J 6 84.45 123.739 86.514 1 50.95 ? C4 CLR 405 R 1 HETATM 5 C C5 CLR . . . J 6 85.127 123.187 87.742 1 50.95 ? C5 CLR 405 R 1 HETATM 6 C C6 CLR . . . J 6 86.389 122.853 87.635 1 50.95 ? C6 CLR 405 R 1 HETATM 7 C C7 CLR . . . J 6 87.228 122.6 88.851 1 50.95 ? C7 CLR 405 R 1 HETATM 8 C C8 CLR . . . J 6 86.472 121.864 89.927 1 50.95 ? C8 CLR 405 R 1 HETATM 9 C C9 CLR . . . J 6 85.127 122.586 90.191 1 50.95 ? C9 CLR 405 R 1 HETATM 10 C C10 CLR . . . J 6 84.276 122.652 88.883 1 50.95 ? C10 CLR 405 R 1 HETATM 11 C C11 CLR . . . J 6 84.41 121.918 91.305 1 50.95 ? C11 CLR 405 R 1 HETATM 12 C C12 CLR . . . J 6 85.171 121.821 92.573 1 50.95 ? C12 CLR 405 R 1 HETATM 13 C C13 CLR . . . J 6 86.545 121.138 92.357 1 50.95 ? C13 CLR 405 R 1 HETATM 14 C C14 CLR . . . J 6 87.249 121.917 91.231 1 50.95 ? C14 CLR 405 R 1 HETATM 15 C C15 CLR . . . J 6 88.666 121.319 91.18 1 50.95 ? C15 CLR 405 R 1 HETATM 16 C C16 CLR . . . J 6 88.903 121.075 92.745 1 50.95 ? C16 CLR 405 R 1 HETATM 17 C C17 CLR . . . J 6 87.543 121.295 93.448 1 50.95 ? C17 CLR 405 R 1 HETATM 18 C C18 CLR . . . J 6 86.346 119.652 92.025 1 50.95 ? C18 CLR 405 R 1 HETATM 19 C C19 CLR . . . J 6 83.735 121.292 88.474 1 50.95 ? C19 CLR 405 R 1 HETATM 20 C C20 CLR . . . J 6 87.395 120.308 94.641 1 50.95 ? C20 CLR 405 R 1 HETATM 21 C C21 CLR . . . J 6 86.035 120.456 95.307 1 50.95 ? C21 CLR 405 R 1 HETATM 22 C C22 CLR . . . J 6 88.449 120.605 95.702 1 50.95 ? C22 CLR 405 R 1 HETATM 23 C C23 CLR . . . J 6 88.781 119.329 96.471 1 50.95 ? C23 CLR 405 R 1 HETATM 24 C C24 CLR . . . J 6 89.888 119.605 97.472 1 50.95 ? C24 CLR 405 R 1 HETATM 25 C C25 CLR . . . J 6 89.329 119.587 98.885 1 50.95 ? C25 CLR 405 R 1 HETATM 26 C C26 CLR . . . J 6 90.48 119.684 99.884 1 50.95 ? C26 CLR 405 R 1 HETATM 27 C C27 CLR . . . J 6 88.389 120.772 99.09 1 50.95 ? C27 CLR 405 R 1 HETATM 28 O O1 CLR . . . J 6 82.666 125.089 85.685 1 50.95 ? O1 CLR 405 R 1 HETATM 29 H H11 CLR . . . J 6 83.454 124.477 89.635 1 50.95 ? H11 CLR 405 R 1 HETATM 30 H H12 CLR . . . J 6 82.367 123.089 89.739 1 50.95 ? H12 CLR 405 R 1 HETATM 31 H H21 CLR . . . J 6 81.924 123.194 87.345 1 50.95 ? H21 CLR 405 R 1 HETATM 32 H H22 CLR . . . J 6 81.596 124.765 88.095 1 50.95 ? H22 CLR 405 R 1 HETATM 33 H H3 CLR . . . J 6 83.779 125.601 87.322 1 50.95 ? H3 CLR 405 R 1 HETATM 34 H H41 CLR . . . J 6 84.024 122.913 85.949 1 50.95 ? H41 CLR 405 R 1 HETATM 35 H H42 CLR . . . J 6 85.191 124.243 85.903 1 50.95 ? H42 CLR 405 R 1 HETATM 36 H H6 CLR . . . J 6 86.798 122.642 86.655 1 50.95 ? H6 CLR 405 R 1 HETATM 37 H H71 CLR . . . J 6 87.565 123.551 89.247 1 50.95 ? H71 CLR 405 R 1 HETATM 38 H H72 CLR . . . J 6 88.088 122.01 88.563 1 50.95 ? H72 CLR 405 R 1 HETATM 39 H H8 CLR . . . J 6 86.313 120.843 89.612 1 50.95 ? H8 CLR 405 R 1 HETATM 40 H H9 CLR . . . J 6 85.35 123.603 90.499 1 50.95 ? H9 CLR 405 R 1 HETATM 41 H H111 CLR . . . J 6 83.501 122.475 91.513 1 50.95 ? H111 CLR 405 R 1 HETATM 42 H H112 CLR . . . J 6 84.138 120.916 91.006 1 50.95 ? H112 CLR 405 R 1 HETATM 43 H H121 CLR . . . J 6 85.328 122.817 92.969 1 50.95 ? H121 CLR 405 R 1 HETATM 44 H H122 CLR . . . J 6 84.588 121.244 93.271 1 50.95 ? H122 CLR 405 R 1 HETATM 45 H H14 CLR . . . J 6 87.33 122.955 91.534 1 50.95 ? H14 CLR 405 R 1 HETATM 46 H H151 CLR . . . J 6 88.682 120.385 90.627 1 50.95 ? H151 CLR 405 R 1 HETATM 47 H H152 CLR . . . J 6 89.378 122.032 90.784 1 50.95 ? H152 CLR 405 R 1 HETATM 48 H H161 CLR . . . J 6 89.24 120.058 92.91 1 50.95 ? H161 CLR 405 R 1 HETATM 49 H H162 CLR . . . J 6 89.634 121.779 93.121 1 50.95 ? H162 CLR 405 R 1 HETATM 50 H H17 CLR . . . J 6 87.5 122.312 93.819 1 50.95 ? H17 CLR 405 R 1 HETATM 51 H H181 CLR . . . J 6 87.308 119.151 91.938 1 50.95 ? H181 CLR 405 R 1 HETATM 52 H H182 CLR . . . J 6 85.777 119.18 92.816 1 50.95 ? H182 CLR 405 R 1 HETATM 53 H H183 CLR . . . J 6 85.798 119.531 91.097 1 50.95 ? H183 CLR 405 R 1 HETATM 54 H H191 CLR . . . J 6 82.954 120.987 89.158 1 50.95 ? H191 CLR 405 R 1 HETATM 55 H H192 CLR . . . J 6 84.533 120.555 88.482 1 50.95 ? H192 CLR 405 R 1 HETATM 56 H H193 CLR . . . J 6 83.322 121.357 87.471 1 50.95 ? H193 CLR 405 R 1 HETATM 57 H H20 CLR . . . J 6 87.523 119.292 94.301 1 50.95 ? H20 CLR 405 R 1 HETATM 58 H H211 CLR . . . J 6 85.316 119.797 94.831 1 50.95 ? H211 CLR 405 R 1 HETATM 59 H H212 CLR . . . J 6 85.701 121.483 95.221 1 50.95 ? H212 CLR 405 R 1 HETATM 60 H H213 CLR . . . J 6 86.116 120.194 96.359 1 50.95 ? H213 CLR 405 R 1 HETATM 61 H H221 CLR . . . J 6 89.357 120.988 95.246 1 50.95 ? H221 CLR 405 R 1 HETATM 62 H H222 CLR . . . J 6 88.059 121.35 96.393 1 50.95 ? H222 CLR 405 R 1 HETATM 63 H H231 CLR . . . J 6 87.897 118.981 96.994 1 50.95 ? H231 CLR 405 R 1 HETATM 64 H H232 CLR . . . J 6 89.11 118.565 95.774 1 50.95 ? H232 CLR 405 R 1 HETATM 65 H H241 CLR . . . J 6 90.325 120.575 97.269 1 50.95 ? H241 CLR 405 R 1 HETATM 66 H H242 CLR . . . J 6 90.653 118.842 97.379 1 50.95 ? H242 CLR 405 R 1 HETATM 67 H H25 CLR . . . J 6 88.788 118.663 99.049 1 50.95 ? H25 CLR 405 R 1 HETATM 68 H H261 CLR . . . J 6 91.198 118.893 99.688 1 50.95 ? H261 CLR 405 R 1 HETATM 69 H H262 CLR . . . J 6 90.967 120.649 99.782 1 50.95 ? H262 CLR 405 R 1 HETATM 70 H H263 CLR . . . J 6 90.092 119.579 100.894 1 50.95 ? H263 CLR 405 R 1 HETATM 71 H H271 CLR . . . J 6 87.389 120.504 98.758 1 50.95 ? H271 CLR 405 R 1 HETATM 72 H H272 CLR . . . J 6 88.36 121.03 100.141 1 50.95 ? H272 CLR 405 R 1 HETATM 73 H H273 CLR . . . J 6 88.747 121.626 98.519 1 50.95 ? H273 CLR 405 R 1 HETATM 74 H H1 CLR . . . J 6 82.25 125.925 85.812 1 50.95 ? H1 CLR 405 R 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 74 #