data_7XT8 # _model_server_result.job_id 4YbR8khmRVn2nxIQNC6BXA _model_server_result.datetime_utc '2024-10-20 07:40:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":408}' # _entry.id 7XT8 # _exptl.entry_id 7XT8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 176.215 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XT8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 N CYS 22 1_555 D SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 D SG CYS 100 N CYS 99 1_555 D SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 232 R CYS 92 1_555 E SG CYS 323 R CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # _atom_sites.entry_id 7XT8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 401 1 CLR CLR . G 6 CLR R 1 402 2 CLR CLR . H 6 CLR R 1 403 3 CLR CLR . I 6 CLR R 1 404 4 CLR CLR . J 6 CLR R 1 405 5 CLR CLR . K 7 PLM R 1 406 6 PLM PLM . L 7 PLM R 1 407 7 PLM PLM . M 8 SRO R 1 408 1 SRO SRO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . M 8 97.316 121.637 85.965 1 42.59 ? OH SRO 408 R 1 HETATM 2 C CZ3 SRO . . . M 8 97.59 121.026 87.196 1 42.59 ? CZ3 SRO 408 R 1 HETATM 3 C CH2 SRO . . . M 8 97.003 121.574 88.384 1 42.59 ? CH2 SRO 408 R 1 HETATM 4 C CZ2 SRO . . . M 8 97.368 120.835 89.664 1 42.59 ? CZ2 SRO 408 R 1 HETATM 5 C CE2 SRO . . . M 8 98.183 119.756 89.614 1 42.59 ? CE2 SRO 408 R 1 HETATM 6 N NE1 SRO . . . M 8 98.673 118.912 90.575 1 42.59 ? NE1 SRO 408 R 1 HETATM 7 C CD1 SRO . . . M 8 99.466 117.923 90.226 1 42.59 ? CD1 SRO 408 R 1 HETATM 8 C CG SRO . . . M 8 99.547 118.083 88.866 1 42.59 ? CG SRO 408 R 1 HETATM 9 C CD2 SRO . . . M 8 98.733 119.264 88.397 1 42.59 ? CD2 SRO 408 R 1 HETATM 10 C CE3 SRO . . . M 8 98.436 119.892 87.221 1 42.59 ? CE3 SRO 408 R 1 HETATM 11 C CB SRO . . . M 8 100.361 117.181 87.942 1 42.59 ? CB SRO 408 R 1 HETATM 12 C CA SRO . . . M 8 101.607 117.925 87.468 1 42.59 ? CA SRO 408 R 1 HETATM 13 N NZ SRO . . . M 8 102.468 117.01 86.742 1 42.59 ? NZ SRO 408 R 1 HETATM 14 H HOH SRO . . . M 8 97.652 121.1 85.266 1 42.59 ? HOH SRO 408 R 1 HETATM 15 H HH2 SRO . . . M 8 96.355 122.442 88.371 1 42.59 ? HH2 SRO 408 R 1 HETATM 16 H HZ2 SRO . . . M 8 96.978 121.165 90.619 1 42.59 ? HZ2 SRO 408 R 1 HETATM 17 H HNE1 SRO . . . M 8 98.429 119.047 91.537 1 42.59 ? HNE1 SRO 408 R 1 HETATM 18 H HD1 SRO . . . M 8 99.934 117.174 90.851 1 42.59 ? HD1 SRO 408 R 1 HETATM 19 H HE3 SRO . . . M 8 98.855 119.517 86.295 1 42.59 ? HE3 SRO 408 R 1 HETATM 20 H HB1 SRO . . . M 8 99.759 116.903 87.086 1 42.59 ? HB1 SRO 408 R 1 HETATM 21 H HB2 SRO . . . M 8 100.659 116.289 88.479 1 42.59 ? HB2 SRO 408 R 1 HETATM 22 H HA1 SRO . . . M 8 101.313 118.737 86.816 1 42.59 ? HA1 SRO 408 R 1 HETATM 23 H HA2 SRO . . . M 8 102.139 118.322 88.324 1 42.59 ? HA2 SRO 408 R 1 HETATM 24 H HNZ1 SRO . . . M 8 102.711 116.239 87.333 1 42.59 ? HNZ1 SRO 408 R 1 HETATM 25 H HNZ2 SRO . . . M 8 103.301 117.489 86.461 1 42.59 ? HNZ2 SRO 408 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #