data_7XT9 # _model_server_result.job_id 8PvszsRwLWcGdGWv-9AIVw _model_server_result.datetime_utc '2024-12-22 03:08:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":407}' # _entry.id 7XT9 # _exptl.entry_id 7XT9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 176.215 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XT9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 232 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 92 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 323 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 183 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 414 n n OH HOH SRO sing 415 n n CZ3 CE3 SRO doub 416 n y CZ3 CH2 SRO sing 417 n y CH2 CZ2 SRO doub 418 n y CH2 HH2 SRO sing 419 n n CZ2 CE2 SRO sing 420 n y CZ2 HZ2 SRO sing 421 n n CE2 NE1 SRO sing 422 n y CE2 CD2 SRO doub 423 n y NE1 CD1 SRO sing 424 n y NE1 HNE1 SRO sing 425 n n CD1 CG SRO doub 426 n y CD1 HD1 SRO sing 427 n n CG CB SRO sing 428 n n CG CD2 SRO sing 429 n y CD2 CE3 SRO sing 430 n y CE3 HE3 SRO sing 431 n n CB CA SRO sing 432 n n CB HB1 SRO sing 433 n n CB HB2 SRO sing 434 n n CA NZ SRO sing 435 n n CA HA1 SRO sing 436 n n CA HA2 SRO sing 437 n n NZ HNZ1 SRO sing 438 n n NZ HNZ2 SRO sing 439 n n # _atom_sites.entry_id 7XT9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CLR R 1 401 1 CLR CLR . F 5 CLR R 1 402 2 CLR CLR . G 5 CLR R 1 403 4 CLR CLR . H 5 CLR R 1 404 5 CLR CLR . I 6 PLM R 1 405 6 PLM PLM . J 6 PLM R 1 406 7 PLM PLM . K 7 SRO R 1 407 1 SRO SRO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . K 7 95.134 121.981 86.448 1 17.81 ? OH SRO 407 R 1 HETATM 2 C CZ3 SRO . . . K 7 95.681 121.432 87.614 1 17.81 ? CZ3 SRO 407 R 1 HETATM 3 C CH2 SRO . . . K 7 95.246 121.937 88.884 1 17.81 ? CH2 SRO 407 R 1 HETATM 4 C CZ2 SRO . . . K 7 95.904 121.271 90.084 1 17.81 ? CZ2 SRO 407 R 1 HETATM 5 C CE2 SRO . . . K 7 96.816 120.29 89.897 1 17.81 ? CE2 SRO 407 R 1 HETATM 6 N NE1 SRO . . . K 7 97.554 119.528 90.763 1 17.81 ? NE1 SRO 407 R 1 HETATM 7 C CD1 SRO . . . K 7 98.384 118.627 90.286 1 17.81 ? CD1 SRO 407 R 1 HETATM 8 C CG SRO . . . K 7 98.218 118.764 88.931 1 17.81 ? CG SRO 407 R 1 HETATM 9 C CD2 SRO . . . K 7 97.205 119.835 88.605 1 17.81 ? CD2 SRO 407 R 1 HETATM 10 C CE3 SRO . . . K 7 96.643 120.401 87.496 1 17.81 ? CE3 SRO 407 R 1 HETATM 11 C CB SRO . . . K 7 98.962 117.934 87.886 1 17.81 ? CB SRO 407 R 1 HETATM 12 C CA SRO . . . K 7 100.272 118.625 87.519 1 17.81 ? CA SRO 407 R 1 HETATM 13 N NZ SRO . . . K 7 100.981 117.826 86.536 1 17.81 ? NZ SRO 407 R 1 HETATM 14 H HOH SRO . . . K 7 95.737 121.865 85.732 1 17.81 ? HOH SRO 407 R 1 HETATM 15 H HH2 SRO . . . K 7 94.51 122.726 88.981 1 17.81 ? HH2 SRO 407 R 1 HETATM 16 H HZ2 SRO . . . K 7 95.648 121.576 91.091 1 17.81 ? HZ2 SRO 407 R 1 HETATM 17 H HNE1 SRO . . . K 7 97.463 119.657 91.751 1 17.81 ? HNE1 SRO 407 R 1 HETATM 18 H HD1 SRO . . . K 7 99.032 117.952 90.828 1 17.81 ? HD1 SRO 407 R 1 HETATM 19 H HE3 SRO . . . K 7 96.938 120.055 86.513 1 17.81 ? HE3 SRO 407 R 1 HETATM 20 H HB1 SRO . . . K 7 98.346 117.834 87.001 1 17.81 ? HB1 SRO 407 R 1 HETATM 21 H HB2 SRO . . . K 7 99.178 116.953 88.288 1 17.81 ? HB2 SRO 407 R 1 HETATM 22 H HA1 SRO . . . K 7 100.057 119.601 87.105 1 17.81 ? HA1 SRO 407 R 1 HETATM 23 H HA2 SRO . . . K 7 100.884 118.735 88.405 1 17.81 ? HA2 SRO 407 R 1 HETATM 24 H HNZ1 SRO . . . K 7 101.182 116.924 86.921 1 17.81 ? HNZ1 SRO 407 R 1 HETATM 25 H HNZ2 SRO . . . K 7 101.838 118.282 86.292 1 17.81 ? HNZ2 SRO 407 R 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #