data_7XTO # _model_server_result.job_id bIts1dVzVcLbx7wbWuYDCg _model_server_result.datetime_utc '2025-06-18 11:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 7XTO # _exptl.entry_id 7XTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-DEAZA-ADENOSINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.88 _cell.angle_gamma 90 _cell.entry_id 7XTO _cell.length_a 181.378 _cell.length_b 104.423 _cell.length_c 124.966 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id 1DA _chem_comp.mon_nstd_flag . _chem_comp.name 1-DEAZA-ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 1DA sing 1 n n O5' HO5' 1DA sing 2 n n C5' C4' 1DA sing 3 n n C5' "H5'1" 1DA sing 4 n n C5' "H5'2" 1DA sing 5 n n C4' O4' 1DA sing 6 n n C4' C3' 1DA sing 7 n n C4' H4' 1DA sing 8 n n O4' C1' 1DA sing 9 n n C3' O3' 1DA sing 10 n n C3' C2' 1DA sing 11 n n C3' H3' 1DA sing 12 n n O3' HO3' 1DA sing 13 n n C2' O2' 1DA sing 14 n n C2' C1' 1DA sing 15 n n C2' H2' 1DA sing 16 n n O2' HO2' 1DA sing 17 n n C1' N9 1DA sing 18 n n C1' H1' 1DA sing 19 n n N9 C8 1DA sing 20 n y N9 C4 1DA sing 21 n y C8 N7 1DA doub 22 n y C8 H8 1DA sing 23 n n N7 C5 1DA sing 24 n y C5 C6 1DA sing 25 n y C5 C4 1DA doub 26 n y C6 N6 1DA sing 27 n n C6 C1 1DA doub 28 n y N6 HN61 1DA sing 29 n n N6 HN62 1DA sing 30 n n C1 C2 1DA sing 31 n y C1 H1 1DA sing 32 n n C2 N3 1DA doub 33 n y C2 H2 1DA sing 34 n n N3 C4 1DA sing 35 n y # _atom_sites.entry_id 7XTO _atom_sites.fract_transf_matrix[1][1] 0.005513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001885 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 1DA A 1 301 305 1DA 1DA . H 2 1DA C 1 301 301 1DA 1DA . I 2 1DA D 1 301 302 1DA 1DA . J 2 1DA B 1 301 301 1DA 1DA . K 2 1DA E 1 301 301 1DA 1DA . L 2 1DA F 1 301 302 1DA 1DA . M 3 HOH A 1 401 73 HOH HOH . M 3 HOH A 2 402 175 HOH HOH . M 3 HOH A 3 403 192 HOH HOH . M 3 HOH A 4 404 60 HOH HOH . M 3 HOH A 5 405 105 HOH HOH . M 3 HOH A 6 406 154 HOH HOH . M 3 HOH A 7 407 80 HOH HOH . M 3 HOH A 8 408 88 HOH HOH . M 3 HOH A 9 409 221 HOH HOH . M 3 HOH A 10 410 270 HOH HOH . M 3 HOH A 11 411 53 HOH HOH . M 3 HOH A 12 412 213 HOH HOH . M 3 HOH A 13 413 41 HOH HOH . M 3 HOH A 14 414 78 HOH HOH . M 3 HOH A 15 415 168 HOH HOH . M 3 HOH A 16 416 17 HOH HOH . M 3 HOH A 17 417 176 HOH HOH . M 3 HOH A 18 418 26 HOH HOH . M 3 HOH A 19 419 206 HOH HOH . M 3 HOH A 20 420 11 HOH HOH . M 3 HOH A 21 421 123 HOH HOH . M 3 HOH A 22 422 174 HOH HOH . M 3 HOH A 23 423 217 HOH HOH . M 3 HOH A 24 424 43 HOH HOH . M 3 HOH A 25 425 112 HOH HOH . M 3 HOH A 26 426 35 HOH HOH . M 3 HOH A 27 427 121 HOH HOH . M 3 HOH A 28 428 260 HOH HOH . M 3 HOH A 29 429 106 HOH HOH . M 3 HOH A 30 430 13 HOH HOH . M 3 HOH A 31 431 82 HOH HOH . M 3 HOH A 32 432 163 HOH HOH . M 3 HOH A 33 433 244 HOH HOH . M 3 HOH A 34 434 109 HOH HOH . M 3 HOH A 35 435 130 HOH HOH . M 3 HOH A 36 436 30 HOH HOH . M 3 HOH A 37 437 102 HOH HOH . N 3 HOH C 1 401 48 HOH HOH . N 3 HOH C 2 402 95 HOH HOH . N 3 HOH C 3 403 185 HOH HOH . N 3 HOH C 4 404 186 HOH HOH . N 3 HOH C 5 405 145 HOH HOH . N 3 HOH C 6 406 214 HOH HOH . N 3 HOH C 7 407 156 HOH HOH . N 3 HOH C 8 408 150 HOH HOH . N 3 HOH C 9 409 16 HOH HOH . N 3 HOH C 10 410 164 HOH HOH . N 3 HOH C 11 411 72 HOH HOH . N 3 HOH C 12 412 22 HOH HOH . N 3 HOH C 13 413 262 HOH HOH . N 3 HOH C 14 414 97 HOH HOH . N 3 HOH C 15 415 52 HOH HOH . N 3 HOH C 16 416 216 HOH HOH . N 3 HOH C 17 417 179 HOH HOH . N 3 HOH C 18 418 39 HOH HOH . N 3 HOH C 19 419 84 HOH HOH . N 3 HOH C 20 420 37 HOH HOH . N 3 HOH C 21 421 126 HOH HOH . N 3 HOH C 22 422 58 HOH HOH . N 3 HOH C 23 423 251 HOH HOH . N 3 HOH C 24 424 267 HOH HOH . N 3 HOH C 25 425 51 HOH HOH . N 3 HOH C 26 426 71 HOH HOH . N 3 HOH C 27 427 104 HOH HOH . N 3 HOH C 28 428 261 HOH HOH . N 3 HOH C 29 429 184 HOH HOH . N 3 HOH C 30 430 101 HOH HOH . N 3 HOH C 31 431 99 HOH HOH . N 3 HOH C 32 432 103 HOH HOH . N 3 HOH C 33 433 116 HOH HOH . N 3 HOH C 34 434 183 HOH HOH . N 3 HOH C 35 435 255 HOH HOH . N 3 HOH C 36 436 232 HOH HOH . N 3 HOH C 37 437 137 HOH HOH . N 3 HOH C 38 438 45 HOH HOH . N 3 HOH C 39 439 193 HOH HOH . O 3 HOH D 1 401 15 HOH HOH . O 3 HOH D 2 402 224 HOH HOH . O 3 HOH D 3 403 151 HOH HOH . O 3 HOH D 4 404 34 HOH HOH . O 3 HOH D 5 405 12 HOH HOH . O 3 HOH D 6 406 242 HOH HOH . O 3 HOH D 7 407 21 HOH HOH . O 3 HOH D 8 408 159 HOH HOH . O 3 HOH D 9 409 3 HOH HOH . O 3 HOH D 10 410 188 HOH HOH . O 3 HOH D 11 411 161 HOH HOH . O 3 HOH D 12 412 38 HOH HOH . O 3 HOH D 13 413 68 HOH HOH . O 3 HOH D 14 414 87 HOH HOH . O 3 HOH D 15 415 40 HOH HOH . O 3 HOH D 16 416 49 HOH HOH . O 3 HOH D 17 417 29 HOH HOH . O 3 HOH D 18 418 187 HOH HOH . O 3 HOH D 19 419 194 HOH HOH . O 3 HOH D 20 420 120 HOH HOH . O 3 HOH D 21 421 5 HOH HOH . O 3 HOH D 22 422 36 HOH HOH . O 3 HOH D 23 423 23 HOH HOH . O 3 HOH D 24 424 189 HOH HOH . O 3 HOH D 25 425 140 HOH HOH . O 3 HOH D 26 426 69 HOH HOH . O 3 HOH D 27 427 47 HOH HOH . O 3 HOH D 28 428 32 HOH HOH . O 3 HOH D 29 429 65 HOH HOH . O 3 HOH D 30 430 74 HOH HOH . O 3 HOH D 31 431 67 HOH HOH . O 3 HOH D 32 432 28 HOH HOH . O 3 HOH D 33 433 62 HOH HOH . O 3 HOH D 34 434 31 HOH HOH . O 3 HOH D 35 435 76 HOH HOH . O 3 HOH D 36 436 124 HOH HOH . O 3 HOH D 37 437 147 HOH HOH . O 3 HOH D 38 438 61 HOH HOH . O 3 HOH D 39 439 111 HOH HOH . O 3 HOH D 40 440 66 HOH HOH . O 3 HOH D 41 441 77 HOH HOH . O 3 HOH D 42 442 118 HOH HOH . O 3 HOH D 43 443 208 HOH HOH . O 3 HOH D 44 444 215 HOH HOH . O 3 HOH D 45 445 128 HOH HOH . O 3 HOH D 46 446 86 HOH HOH . O 3 HOH D 47 447 252 HOH HOH . O 3 HOH D 48 448 114 HOH HOH . O 3 HOH D 49 449 246 HOH HOH . O 3 HOH D 50 450 85 HOH HOH . O 3 HOH D 51 451 250 HOH HOH . O 3 HOH D 52 452 223 HOH HOH . O 3 HOH D 53 453 139 HOH HOH . O 3 HOH D 54 454 134 HOH HOH . O 3 HOH D 55 455 133 HOH HOH . O 3 HOH D 56 456 119 HOH HOH . P 3 HOH B 1 401 266 HOH HOH . P 3 HOH B 2 402 195 HOH HOH . P 3 HOH B 3 403 24 HOH HOH . P 3 HOH B 4 404 110 HOH HOH . P 3 HOH B 5 405 143 HOH HOH . P 3 HOH B 6 406 50 HOH HOH . P 3 HOH B 7 407 153 HOH HOH . P 3 HOH B 8 408 63 HOH HOH . P 3 HOH B 9 409 27 HOH HOH . P 3 HOH B 10 410 269 HOH HOH . P 3 HOH B 11 411 190 HOH HOH . P 3 HOH B 12 412 210 HOH HOH . P 3 HOH B 13 413 93 HOH HOH . P 3 HOH B 14 414 117 HOH HOH . P 3 HOH B 15 415 54 HOH HOH . P 3 HOH B 16 416 90 HOH HOH . P 3 HOH B 17 417 158 HOH HOH . P 3 HOH B 18 418 247 HOH HOH . P 3 HOH B 19 419 265 HOH HOH . P 3 HOH B 20 420 249 HOH HOH . P 3 HOH B 21 421 238 HOH HOH . P 3 HOH B 22 422 64 HOH HOH . P 3 HOH B 23 423 233 HOH HOH . P 3 HOH B 24 424 83 HOH HOH . P 3 HOH B 25 425 220 HOH HOH . P 3 HOH B 26 426 204 HOH HOH . P 3 HOH B 27 427 254 HOH HOH . P 3 HOH B 28 428 177 HOH HOH . Q 3 HOH E 1 401 146 HOH HOH . Q 3 HOH E 2 402 6 HOH HOH . Q 3 HOH E 3 403 144 HOH HOH . Q 3 HOH E 4 404 178 HOH HOH . Q 3 HOH E 5 405 166 HOH HOH . Q 3 HOH E 6 406 9 HOH HOH . Q 3 HOH E 7 407 169 HOH HOH . Q 3 HOH E 8 408 227 HOH HOH . Q 3 HOH E 9 409 44 HOH HOH . Q 3 HOH E 10 410 127 HOH HOH . Q 3 HOH E 11 411 235 HOH HOH . Q 3 HOH E 12 412 148 HOH HOH . Q 3 HOH E 13 413 2 HOH HOH . Q 3 HOH E 14 414 240 HOH HOH . Q 3 HOH E 15 415 256 HOH HOH . Q 3 HOH E 16 416 245 HOH HOH . Q 3 HOH E 17 417 91 HOH HOH . Q 3 HOH E 18 418 211 HOH HOH . Q 3 HOH E 19 419 236 HOH HOH . Q 3 HOH E 20 420 196 HOH HOH . Q 3 HOH E 21 421 129 HOH HOH . Q 3 HOH E 22 422 199 HOH HOH . Q 3 HOH E 23 423 141 HOH HOH . Q 3 HOH E 24 424 228 HOH HOH . Q 3 HOH E 25 425 94 HOH HOH . Q 3 HOH E 26 426 81 HOH HOH . Q 3 HOH E 27 427 125 HOH HOH . Q 3 HOH E 28 428 96 HOH HOH . Q 3 HOH E 29 429 18 HOH HOH . Q 3 HOH E 30 430 135 HOH HOH . Q 3 HOH E 31 431 107 HOH HOH . R 3 HOH F 1 401 25 HOH HOH . R 3 HOH F 2 402 230 HOH HOH . R 3 HOH F 3 403 253 HOH HOH . R 3 HOH F 4 404 4 HOH HOH . R 3 HOH F 5 405 8 HOH HOH . R 3 HOH F 6 406 180 HOH HOH . R 3 HOH F 7 407 155 HOH HOH . R 3 HOH F 8 408 20 HOH HOH . R 3 HOH F 9 409 59 HOH HOH . R 3 HOH F 10 410 198 HOH HOH . R 3 HOH F 11 411 1 HOH HOH . R 3 HOH F 12 412 201 HOH HOH . R 3 HOH F 13 413 75 HOH HOH . R 3 HOH F 14 414 122 HOH HOH . R 3 HOH F 15 415 142 HOH HOH . R 3 HOH F 16 416 14 HOH HOH . R 3 HOH F 17 417 200 HOH HOH . R 3 HOH F 18 418 92 HOH HOH . R 3 HOH F 19 419 10 HOH HOH . R 3 HOH F 20 420 57 HOH HOH . R 3 HOH F 21 421 138 HOH HOH . R 3 HOH F 22 422 165 HOH HOH . R 3 HOH F 23 423 55 HOH HOH . R 3 HOH F 24 424 42 HOH HOH . R 3 HOH F 25 425 239 HOH HOH . R 3 HOH F 26 426 70 HOH HOH . R 3 HOH F 27 427 231 HOH HOH . R 3 HOH F 28 428 79 HOH HOH . R 3 HOH F 29 429 132 HOH HOH . R 3 HOH F 30 430 19 HOH HOH . R 3 HOH F 31 431 268 HOH HOH . R 3 HOH F 32 432 89 HOH HOH . R 3 HOH F 33 433 171 HOH HOH . R 3 HOH F 34 434 237 HOH HOH . R 3 HOH F 35 435 98 HOH HOH . R 3 HOH F 36 436 182 HOH HOH . R 3 HOH F 37 437 100 HOH HOH . R 3 HOH F 38 438 203 HOH HOH . R 3 HOH F 39 439 108 HOH HOH . R 3 HOH F 40 440 234 HOH HOH . R 3 HOH F 41 441 167 HOH HOH . R 3 HOH F 42 442 226 HOH HOH . R 3 HOH F 43 443 115 HOH HOH . R 3 HOH F 44 444 173 HOH HOH . R 3 HOH F 45 445 152 HOH HOH . R 3 HOH F 46 446 248 HOH HOH . R 3 HOH F 47 447 257 HOH HOH . R 3 HOH F 48 448 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 1DA . . . K 2 53.401 37.88 8.408 1 30.67 ? O5' 1DA 301 E 1 HETATM 2 C C5' 1DA . . . K 2 52.996 37.191 9.589 1 37.18 ? C5' 1DA 301 E 1 HETATM 3 C C4' 1DA . . . K 2 53.883 37.537 10.759 1 29.99 ? C4' 1DA 301 E 1 HETATM 4 O O4' 1DA . . . K 2 53.083 37.798 11.919 1 53.22 ? O4' 1DA 301 E 1 HETATM 5 C C3' 1DA . . . K 2 54.856 36.451 11.196 1 33.4 ? C3' 1DA 301 E 1 HETATM 6 O O3' 1DA . . . K 2 56.12 36.661 10.569 1 36.27 ? O3' 1DA 301 E 1 HETATM 7 C C2' 1DA . . . K 2 54.991 36.668 12.719 1 47.51 ? C2' 1DA 301 E 1 HETATM 8 O O2' 1DA . . . K 2 56.276 37.069 13.146 1 35.13 ? O2' 1DA 301 E 1 HETATM 9 C C1' 1DA . . . K 2 53.925 37.733 13.039 1 39.78 ? C1' 1DA 301 E 1 HETATM 10 N N9 1DA . . . K 2 53.131 37.444 14.235 1 31.13 ? N9 1DA 301 E 1 HETATM 11 C C8 1DA . . . K 2 52.354 36.381 14.514 1 41.17 ? C8 1DA 301 E 1 HETATM 12 N N7 1DA . . . K 2 51.846 36.56 15.751 1 52.88 ? N7 1DA 301 E 1 HETATM 13 C C5 1DA . . . K 2 52.309 37.716 16.232 1 35.41 ? C5 1DA 301 E 1 HETATM 14 C C6 1DA . . . K 2 52.115 38.377 17.428 1 44.08 ? C6 1DA 301 E 1 HETATM 15 N N6 1DA . . . K 2 51.279 37.895 18.511 1 30.91 ? N6 1DA 301 E 1 HETATM 16 C C1 1DA . . . K 2 52.723 39.565 17.652 1 20.48 ? C1 1DA 301 E 1 HETATM 17 C C2 1DA . . . K 2 53.54 40.119 16.683 1 34.83 ? C2 1DA 301 E 1 HETATM 18 N N3 1DA . . . K 2 53.733 39.468 15.516 1 27.41 ? N3 1DA 301 E 1 HETATM 19 C C4 1DA . . . K 2 53.112 38.261 15.287 1 69.56 ? C4 1DA 301 E 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 915 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #