data_7XV3
#
_model_server_result.job_id            HOhrJrmBxv5VryXVqtOXOQ 
_model_server_result.datetime_utc      '2024-11-06 03:13:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xv3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    7XV3 
#
_exptl.entry_id    7XV3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              497.391 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 91 R CYS 91 1_555 A SG CYS 168 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 D SG CYS 44 N CYS 22 1_555 D SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
#
_chem_comp.formula           'C24 H20 N O9 P' 
_chem_comp.formula_weight    497.391 
_chem_comp.id                WJS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7XV3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 WJS R 1 401 401 WJS LPS . 
G 7 HOH R 1 601 601 HOH HOH . 
G 7 HOH R 2 602 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P25 WJS . . . F 6 145.253 138.895 98.165 1 67.74 ? P25 WJS 401 R 1 
HETATM 2 C C09 WJS . . . F 6 133.596 136.403 106.805 1 67.74 ? C09 WJS 401 R 1 
HETATM 3 C C10 WJS . . . F 6 134.576 136.4 105.614 1 67.74 ? C10 WJS 401 R 1 
HETATM 4 C C11 WJS . . . F 6 133.999 136.785 104.239 1 67.74 ? C11 WJS 401 R 1 
HETATM 5 C C12 WJS . . . F 6 134.2 135.756 103.112 1 67.74 ? C12 WJS 401 R 1 
HETATM 6 C C13 WJS . . . F 6 134.72 136.303 101.785 1 67.74 ? C13 WJS 401 R 1 
HETATM 7 C C14 WJS . . . F 6 135.901 135.531 101.158 1 67.74 ? C14 WJS 401 R 1 
HETATM 8 C C15 WJS . . . F 6 136.78 136.352 100.196 1 67.74 ? C15 WJS 401 R 1 
HETATM 9 C C16 WJS . . . F 6 138.041 135.653 99.661 1 67.74 ? C16 WJS 401 R 1 
HETATM 10 C C17 WJS . . . F 6 138.973 136.549 98.826 1 67.74 ? C17 WJS 401 R 1 
HETATM 11 C C18 WJS . . . F 6 140.406 136.581 99.295 1 67.74 ? C18 WJS 401 R 1 
HETATM 12 O O19 WJS . . . F 6 141.337 136.158 98.634 1 67.74 ? O19 WJS 401 R 1 
HETATM 13 O O20 WJS . . . F 6 140.66 137.115 100.507 1 67.74 ? O20 WJS 401 R 1 
HETATM 14 C C21 WJS . . . F 6 141.941 137.702 100.684 1 67.74 ? C21 WJS 401 R 1 
HETATM 15 C C22 WJS . . . F 6 141.891 139.203 100.445 1 67.74 ? C22 WJS 401 R 1 
HETATM 16 C C23 WJS . . . F 6 143.073 139.7 99.554 1 67.74 ? C23 WJS 401 R 1 
HETATM 17 O O24 WJS . . . F 6 144.022 138.744 99.42 1 67.74 ? O24 WJS 401 R 1 
HETATM 18 O O26 WJS . . . F 6 144.906 137.794 97.228 1 67.74 -1 O26 WJS 401 R 1 
HETATM 19 O O27 WJS . . . F 6 145.201 140.335 97.814 1 67.74 ? O27 WJS 401 R 1 
HETATM 20 O O28 WJS . . . F 6 146.68 138.6 98.909 1 67.74 ? O28 WJS 401 R 1 
HETATM 21 C C29 WJS . . . F 6 146.752 137.736 99.972 1 67.74 ? C29 WJS 401 R 1 
HETATM 22 C C30 WJS . . . F 6 147.913 138.113 100.863 1 67.74 ? C30 WJS 401 R 1 
HETATM 23 C C31 WJS . . . F 6 148.26 137.015 101.836 1 67.74 ? C31 WJS 401 R 1 
HETATM 24 O O32 WJS . . . F 6 147.333 136.333 102.3 1 67.74 ? O32 WJS 401 R 1 
HETATM 25 O O33 WJS . . . F 6 149.459 136.862 102.113 1 67.74 ? O33 WJS 401 R 1 
HETATM 26 N N34 WJS . . . F 6 149.061 138.267 99.984 1 67.74 ? N34 WJS 401 R 1 
HETATM 27 O O35 WJS . . . F 6 141.904 139.735 101.688 1 67.74 ? O35 WJS 401 R 1 
HETATM 28 C C8 WJS . . . F 6 134.2 136.668 108.185 1 67.74 ? C8 WJS 401 R 1 
HETATM 29 C C7 WJS . . . F 6 134.133 135.521 109.188 1 67.74 ? C7 WJS 401 R 1 
HETATM 30 C C6 WJS . . . F 6 133.232 135.778 110.403 1 67.74 ? C6 WJS 401 R 1 
HETATM 31 C C5 WJS . . . F 6 133.861 135.546 111.788 1 67.74 ? C5 WJS 401 R 1 
HETATM 32 C C4 WJS . . . F 6 133.243 136.405 112.92 1 67.74 ? C4 WJS 401 R 1 
HETATM 33 C C3 WJS . . . F 6 134.2 136.801 114.087 1 67.74 ? C3 WJS 401 R 1 
HETATM 34 C C2 WJS . . . F 6 134.2 138.286 114.402 1 67.74 ? C2 WJS 401 R 1 
HETATM 35 C C1 WJS . . . F 6 134.192 138.598 115.872 1 67.74 ? C1 WJS 401 R 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#