data_7XVE # _model_server_result.job_id Hw0kezKodQX9Wi7aR8QGXA _model_server_result.datetime_utc '2025-08-31 21:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2004}' # _entry.id 7XVE # _exptl.entry_id 7XVE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XVE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 Z N N ? 7 AA N N ? 7 BA N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2001 NAG 4 n D NAG 2 D 2 NAG A 2002 NAG 4 n E NAG 1 E 1 NAG A 2003 NAG 4 n E NAG 2 E 2 NAG A 2004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 349 A CYS 315 1_555 A SG CYS 364 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 929 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 931 A CYS 897 1_555 A SG CYS 937 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 969 A CYS 935 1_555 A SG CYS 978 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf5 A SG CYS 1384 A CYS 1350 1_555 A SG CYS 1404 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 1749 A CYS 1715 1_555 A SG CYS 1764 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 317 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 A ND2 ASN 1386 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 1400 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 A ND2 ASN 1409 A ASN 1375 1_555 F C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 MA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 NA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 OA C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 PA C1 NAG . B NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale9 C ND2 ASN 66 C ASN 66 1_555 QA C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 137 n n C1 C10 CLR sing 138 n n C1 H11 CLR sing 139 n n C1 H12 CLR sing 140 n n C2 C3 CLR sing 141 n n C2 H21 CLR sing 142 n n C2 H22 CLR sing 143 n n C3 C4 CLR sing 144 n n C3 O1 CLR sing 145 n n C3 H3 CLR sing 146 n n C4 C5 CLR sing 147 n n C4 H41 CLR sing 148 n n C4 H42 CLR sing 149 n n C5 C6 CLR doub 150 n n C5 C10 CLR sing 151 n n C6 C7 CLR sing 152 n n C6 H6 CLR sing 153 n n C7 C8 CLR sing 154 n n C7 H71 CLR sing 155 n n C7 H72 CLR sing 156 n n C8 C9 CLR sing 157 n n C8 C14 CLR sing 158 n n C8 H8 CLR sing 159 n n C9 C10 CLR sing 160 n n C9 C11 CLR sing 161 n n C9 H9 CLR sing 162 n n C10 C19 CLR sing 163 n n C11 C12 CLR sing 164 n n C11 H111 CLR sing 165 n n C11 H112 CLR sing 166 n n C12 C13 CLR sing 167 n n C12 H121 CLR sing 168 n n C12 H122 CLR sing 169 n n C13 C14 CLR sing 170 n n C13 C17 CLR sing 171 n n C13 C18 CLR sing 172 n n C14 C15 CLR sing 173 n n C14 H14 CLR sing 174 n n C15 C16 CLR sing 175 n n C15 H151 CLR sing 176 n n C15 H152 CLR sing 177 n n C16 C17 CLR sing 178 n n C16 H161 CLR sing 179 n n C16 H162 CLR sing 180 n n C17 C20 CLR sing 181 n n C17 H17 CLR sing 182 n n C18 H181 CLR sing 183 n n C18 H182 CLR sing 184 n n C18 H183 CLR sing 185 n n C19 H191 CLR sing 186 n n C19 H192 CLR sing 187 n n C19 H193 CLR sing 188 n n C20 C21 CLR sing 189 n n C20 C22 CLR sing 190 n n C20 H20 CLR sing 191 n n C21 H211 CLR sing 192 n n C21 H212 CLR sing 193 n n C21 H213 CLR sing 194 n n C22 C23 CLR sing 195 n n C22 H221 CLR sing 196 n n C22 H222 CLR sing 197 n n C23 C24 CLR sing 198 n n C23 H231 CLR sing 199 n n C23 H232 CLR sing 200 n n C24 C25 CLR sing 201 n n C24 H241 CLR sing 202 n n C24 H242 CLR sing 203 n n C25 C26 CLR sing 204 n n C25 C27 CLR sing 205 n n C25 H25 CLR sing 206 n n C26 H261 CLR sing 207 n n C26 H262 CLR sing 208 n n C26 H263 CLR sing 209 n n C27 H271 CLR sing 210 n n C27 H272 CLR sing 211 n n C27 H273 CLR sing 212 n n O1 H1 CLR sing 213 n n # _atom_sites.entry_id 7XVE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2001 2005 NAG NAG . G 5 NAG A 1 2002 2006 NAG NAG . H 6 Y01 A 1 2003 2007 Y01 Y01 . I 7 CLR A 1 2004 2008 CLR CLR . J 8 LPE A 1 2005 2009 LPE LPE . K 8 LPE A 1 2006 2010 LPE LPE . L 9 1PW A 1 2007 2011 1PW 1PW . M 8 LPE A 1 2008 2012 LPE LPE . N 10 PCW A 1 2009 2013 PCW PCW . O 8 LPE A 1 2010 2014 LPE LPE . P 8 LPE A 1 2011 2015 LPE LPE . Q 10 PCW A 1 2012 2016 PCW PCW . R 10 PCW A 1 2013 2017 PCW PCW . S 10 PCW A 1 2014 2018 PCW PCW . T 8 LPE A 1 2015 2019 LPE LPE . U 8 LPE A 1 2016 2020 LPE LPE . V 8 LPE A 1 2017 2021 LPE LPE . W 8 LPE A 1 2018 2022 LPE LPE . X 8 LPE A 1 2019 2023 LPE LPE . Y 8 LPE A 1 2020 2024 LPE LPE . Z 7 CLR A 1 2021 2027 CLR CLR . AA 7 CLR A 1 2022 2029 CLR CLR . BA 7 CLR A 1 2023 2030 CLR CLR . CA 8 LPE A 1 2024 2031 LPE LPE . DA 8 LPE A 1 2025 2032 LPE LPE . EA 8 LPE A 1 2026 2033 LPE LPE . FA 8 LPE A 1 2027 2034 LPE LPE . GA 10 PCW A 1 2028 2035 PCW PCW . HA 10 PCW A 1 2029 2036 PCW PCW . IA 8 LPE A 1 2030 2038 LPE LPE . JA 11 P5S A 1 2031 2039 P5S P5S . KA 8 LPE A 1 2032 305 LPE LPE . LA 8 LPE B 1 301 306 LPE LPE . MA 5 NAG B 1 302 301 NAG NAG . NA 5 NAG B 1 303 302 NAG NAG . OA 5 NAG B 1 304 303 NAG NAG . PA 5 NAG B 1 305 304 NAG NAG . QA 5 NAG C 1 301 301 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . I 7 192.808 180.839 153.517 1 35.3 ? C1 CLR 2004 A 1 HETATM 2 C C2 CLR . . . I 7 193.083 180.3 152.119 1 35.3 ? C2 CLR 2004 A 1 HETATM 3 C C3 CLR . . . I 7 192.284 181.075 151.082 1 35.3 ? C3 CLR 2004 A 1 HETATM 4 C C4 CLR . . . I 7 192.783 182.51 151.083 1 35.3 ? C4 CLR 2004 A 1 HETATM 5 C C5 CLR . . . I 7 192.626 183.093 152.466 1 35.3 ? C5 CLR 2004 A 1 HETATM 6 C C6 CLR . . . I 7 192.055 184.304 152.574 1 35.3 ? C6 CLR 2004 A 1 HETATM 7 C C7 CLR . . . I 7 191.654 184.922 153.889 1 35.3 ? C7 CLR 2004 A 1 HETATM 8 C C8 CLR . . . I 7 192.477 184.342 155.022 1 35.3 ? C8 CLR 2004 A 1 HETATM 9 C C9 CLR . . . I 7 192.495 182.822 154.95 1 35.3 ? C9 CLR 2004 A 1 HETATM 10 C C10 CLR . . . I 7 193.135 182.321 153.662 1 35.3 ? C10 CLR 2004 A 1 HETATM 11 C C11 CLR . . . I 7 193.21 182.218 156.16 1 35.3 ? C11 CLR 2004 A 1 HETATM 12 C C12 CLR . . . I 7 192.675 182.738 157.49 1 35.3 ? C12 CLR 2004 A 1 HETATM 13 C C13 CLR . . . I 7 192.725 184.254 157.527 1 35.3 ? C13 CLR 2004 A 1 HETATM 14 C C14 CLR . . . I 7 191.914 184.781 156.365 1 35.3 ? C14 CLR 2004 A 1 HETATM 15 C C15 CLR . . . I 7 191.847 186.278 156.627 1 35.3 ? C15 CLR 2004 A 1 HETATM 16 C C16 CLR . . . I 7 191.716 186.36 158.146 1 35.3 ? C16 CLR 2004 A 1 HETATM 17 C C17 CLR . . . I 7 192.065 184.971 158.698 1 35.3 ? C17 CLR 2004 A 1 HETATM 18 C C18 CLR . . . I 7 194.173 184.735 157.424 1 35.3 ? C18 CLR 2004 A 1 HETATM 19 C C19 CLR . . . I 7 194.65 182.502 153.734 1 35.3 ? C19 CLR 2004 A 1 HETATM 20 C C20 CLR . . . I 7 192.836 185.061 160.017 1 35.3 ? C20 CLR 2004 A 1 HETATM 21 C C21 CLR . . . I 7 192.896 183.744 160.785 1 35.3 ? C21 CLR 2004 A 1 HETATM 22 C C22 CLR . . . I 7 192.204 186.135 160.89 1 35.3 ? C22 CLR 2004 A 1 HETATM 23 C C23 CLR . . . I 7 192.596 185.992 162.353 1 35.3 ? C23 CLR 2004 A 1 HETATM 24 C C24 CLR . . . I 7 191.676 186.837 163.221 1 35.3 ? C24 CLR 2004 A 1 HETATM 25 C C25 CLR . . . I 7 191.961 186.631 164.701 1 35.3 ? C25 CLR 2004 A 1 HETATM 26 C C26 CLR . . . I 7 193.378 187.066 165.051 1 35.3 ? C26 CLR 2004 A 1 HETATM 27 C C27 CLR . . . I 7 190.933 187.367 165.551 1 35.3 ? C27 CLR 2004 A 1 HETATM 28 O O1 CLR . . . I 7 192.483 180.499 149.789 1 35.3 ? O1 CLR 2004 A 1 # _model_server_stats.io_time_ms 674 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 710 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #