data_7XVE # _model_server_result.job_id ibmctE477mPoEUZz2P4NFQ _model_server_result.datetime_utc '2025-09-01 01:06:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2007}' # _entry.id 7XVE # _exptl.entry_id 7XVE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 421.508 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XVE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2001 NAG 4 n D NAG 2 D 2 NAG A 2002 NAG 4 n E NAG 1 E 1 NAG A 2003 NAG 4 n E NAG 2 E 2 NAG A 2004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 349 A CYS 315 1_555 A SG CYS 364 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 929 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 931 A CYS 897 1_555 A SG CYS 937 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 969 A CYS 935 1_555 A SG CYS 978 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf5 A SG CYS 1384 A CYS 1350 1_555 A SG CYS 1404 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 1749 A CYS 1715 1_555 A SG CYS 1764 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 317 A ASN 283 1_555 G C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 A ND2 ASN 1386 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 1400 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 A ND2 ASN 1409 A ASN 1375 1_555 F C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 MA C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 NA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 OA C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 PA C1 NAG . B NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale9 C ND2 ASN 66 C ASN 66 1_555 QA C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C20 H40 N O6 P' _chem_comp.formula_weight 421.508 _chem_comp.id 1PW _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAG PBB 1PW doub 1 n n PBB OAF 1PW sing 2 n n PBB OAD 1PW sing 3 n n PBB OAX 1PW sing 4 n n CAV OAX 1PW sing 5 n n CAV CBA 1PW sing 6 n n OAE CAZ 1PW sing 7 n n CBA CAZ 1PW sing 8 n n CBA NAW 1PW sing 9 n n CAZ CAI 1PW sing 10 n n OAC CAY 1PW doub 11 n n NAW CAY 1PW sing 12 n n CAY CAB 1PW sing 13 n n CAI CAH 1PW doub 14 e n CAH CAK 1PW sing 15 n n CAK CAM 1PW sing 16 n n CAM CAO 1PW sing 17 n n CAO CAQ 1PW sing 18 n n CAQ CAS 1PW sing 19 n n CAS CAU 1PW sing 20 n n CAU CAT 1PW sing 21 n n CAT CAR 1PW sing 22 n n CAR CAP 1PW sing 23 n n CAP CAN 1PW sing 24 n n CAN CAL 1PW sing 25 n n CAL CAJ 1PW sing 26 n n CAJ CAA 1PW sing 27 n n CAA H1 1PW sing 28 n n CAA H2 1PW sing 29 n n CAA H3 1PW sing 30 n n CAJ H4 1PW sing 31 n n CAJ H5 1PW sing 32 n n CAL H6 1PW sing 33 n n CAL H7 1PW sing 34 n n CAN H8 1PW sing 35 n n CAN H9 1PW sing 36 n n CAP H10 1PW sing 37 n n CAP H11 1PW sing 38 n n CAR H12 1PW sing 39 n n CAR H13 1PW sing 40 n n CAT H14 1PW sing 41 n n CAT H15 1PW sing 42 n n CAU H16 1PW sing 43 n n CAU H17 1PW sing 44 n n CAS H18 1PW sing 45 n n CAS H19 1PW sing 46 n n CAQ H20 1PW sing 47 n n CAQ H21 1PW sing 48 n n CAO H22 1PW sing 49 n n CAO H23 1PW sing 50 n n CAM H24 1PW sing 51 n n CAM H25 1PW sing 52 n n CAK H26 1PW sing 53 n n CAK H27 1PW sing 54 n n CAH H28 1PW sing 55 n n CAI H29 1PW sing 56 n n CAZ H30 1PW sing 57 n n OAE H31 1PW sing 58 n n CBA H32 1PW sing 59 n n NAW H33 1PW sing 60 n n CAB H34 1PW sing 61 n n CAB H35 1PW sing 62 n n CAB H36 1PW sing 63 n n CAV H37 1PW sing 64 n n CAV H38 1PW sing 65 n n OAF H39 1PW sing 66 n n OAD H40 1PW sing 67 n n # _atom_sites.entry_id 7XVE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 2001 2005 NAG NAG . G 5 NAG A 1 2002 2006 NAG NAG . H 6 Y01 A 1 2003 2007 Y01 Y01 . I 7 CLR A 1 2004 2008 CLR CLR . J 8 LPE A 1 2005 2009 LPE LPE . K 8 LPE A 1 2006 2010 LPE LPE . L 9 1PW A 1 2007 2011 1PW 1PW . M 8 LPE A 1 2008 2012 LPE LPE . N 10 PCW A 1 2009 2013 PCW PCW . O 8 LPE A 1 2010 2014 LPE LPE . P 8 LPE A 1 2011 2015 LPE LPE . Q 10 PCW A 1 2012 2016 PCW PCW . R 10 PCW A 1 2013 2017 PCW PCW . S 10 PCW A 1 2014 2018 PCW PCW . T 8 LPE A 1 2015 2019 LPE LPE . U 8 LPE A 1 2016 2020 LPE LPE . V 8 LPE A 1 2017 2021 LPE LPE . W 8 LPE A 1 2018 2022 LPE LPE . X 8 LPE A 1 2019 2023 LPE LPE . Y 8 LPE A 1 2020 2024 LPE LPE . Z 7 CLR A 1 2021 2027 CLR CLR . AA 7 CLR A 1 2022 2029 CLR CLR . BA 7 CLR A 1 2023 2030 CLR CLR . CA 8 LPE A 1 2024 2031 LPE LPE . DA 8 LPE A 1 2025 2032 LPE LPE . EA 8 LPE A 1 2026 2033 LPE LPE . FA 8 LPE A 1 2027 2034 LPE LPE . GA 10 PCW A 1 2028 2035 PCW PCW . HA 10 PCW A 1 2029 2036 PCW PCW . IA 8 LPE A 1 2030 2038 LPE LPE . JA 11 P5S A 1 2031 2039 P5S P5S . KA 8 LPE A 1 2032 305 LPE LPE . LA 8 LPE B 1 301 306 LPE LPE . MA 5 NAG B 1 302 301 NAG NAG . NA 5 NAG B 1 303 302 NAG NAG . OA 5 NAG B 1 304 303 NAG NAG . PA 5 NAG B 1 305 304 NAG NAG . QA 5 NAG C 1 301 301 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 1PW . . . L 9 175.72 154.222 166.916 1 28.66 ? CAA 1PW 2007 A 1 HETATM 2 C CAJ 1PW . . . L 9 176.994 153.86 167.639 1 28.66 ? CAJ 1PW 2007 A 1 HETATM 3 C CAL 1PW . . . L 9 178.244 154.408 167 1 28.66 ? CAL 1PW 2007 A 1 HETATM 4 C CAN 1PW . . . L 9 178.249 155.914 166.815 1 28.66 ? CAN 1PW 2007 A 1 HETATM 5 C CAP 1PW . . . L 9 179.493 156.45 166.129 1 28.66 ? CAP 1PW 2007 A 1 HETATM 6 C CAR 1PW . . . L 9 180.701 156.588 167.038 1 28.66 ? CAR 1PW 2007 A 1 HETATM 7 C CAT 1PW . . . L 9 180.675 157.824 167.916 1 28.66 ? CAT 1PW 2007 A 1 HETATM 8 C CAU 1PW . . . L 9 180.479 159.118 167.148 1 28.66 ? CAU 1PW 2007 A 1 HETATM 9 C CAS 1PW . . . L 9 180.421 160.356 168.016 1 28.66 ? CAS 1PW 2007 A 1 HETATM 10 C CAQ 1PW . . . L 9 179.826 161.567 167.327 1 28.66 ? CAQ 1PW 2007 A 1 HETATM 11 C CAO 1PW . . . L 9 179.723 162.796 168.208 1 28.66 ? CAO 1PW 2007 A 1 HETATM 12 C CAM 1PW . . . L 9 181.047 163.269 168.774 1 28.66 ? CAM 1PW 2007 A 1 HETATM 13 C CAK 1PW . . . L 9 180.983 164.632 169.451 1 28.66 ? CAK 1PW 2007 A 1 HETATM 14 C CAH 1PW . . . L 9 180.173 164.626 170.7 1 28.66 ? CAH 1PW 2007 A 1 HETATM 15 C CAI 1PW . . . L 9 179.069 165.317 170.914 1 28.66 ? CAI 1PW 2007 A 1 HETATM 16 C CAZ 1PW . . . L 9 178.183 165.161 172.109 1 28.66 ? CAZ 1PW 2007 A 1 HETATM 17 O OAE 1PW . . . L 9 178.724 164.18 172.973 1 28.66 ? OAE 1PW 2007 A 1 HETATM 18 C CBA 1PW . . . L 9 177.959 166.46 172.906 1 28.66 ? CBA 1PW 2007 A 1 HETATM 19 C CAV 1PW . . . L 9 177.254 167.517 172.068 1 28.66 ? CAV 1PW 2007 A 1 HETATM 20 O OAX 1PW . . . L 9 176.995 168.684 172.861 1 28.66 ? OAX 1PW 2007 A 1 HETATM 21 P PBB 1PW . . . L 9 176.105 169.874 172.219 1 28.66 ? PBB 1PW 2007 A 1 HETATM 22 O OAF 1PW . . . L 9 176.041 170.957 173.279 1 28.66 ? OAF 1PW 2007 A 1 HETATM 23 O OAG 1PW . . . L 9 176.84 170.316 170.969 1 28.66 ? OAG 1PW 2007 A 1 HETATM 24 O OAD 1PW . . . L 9 174.751 169.262 171.92 1 28.66 ? OAD 1PW 2007 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #