data_7XW5
#
_model_server_result.job_id            ylDNRj09x2YzJmCpFc7NcA 
_model_server_result.datetime_utc      '2025-08-31 12:14:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":802}' 
#
_entry.id    7XW5 
#
_exptl.entry_id    7XW5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 H N N 
? 8 I N N 
? 8 J N N 
? 8 K N N 
? 8 FA N N 
? 8 GA N N 
? 8 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf3 E SG CYS 11 R CYS 31 1_555 E SG CYS 21 R CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 E SG CYS 263 R CYS 283 1_555 E SG CYS 328 R CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 E SG CYS 264 R CYS 284 1_555 E SG CYS 338 R CYS 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 E SG CYS 424 R CYS 494 1_555 E SG CYS 499 R CYS 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 F SG CYS 7 X CYS 7 1_555 F SG CYS 31 X CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 F SG CYS 10 X CYS 10 1_555 F SG CYS 60 X CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf9 F SG CYS 28 X CYS 28 1_555 F SG CYS 82 X CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 F SG CYS 32 X CYS 32 1_555 F SG CYS 84 X CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf11 F SG CYS 59 X CYS 59 1_555 F SG CYS 87 X CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 G SG CYS 2 Y CYS 22 1_555 G SG CYS 52 Y CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 G SG CYS 16 Y CYS 36 1_555 G SG CYS 67 Y CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 G SG CYS 19 Y CYS 39 1_555 G SG CYS 105 Y CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf15 G SG CYS 27 Y CYS 47 1_555 G SG CYS 83 Y CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf16 G SG CYS 31 Y CYS 51 1_555 G SG CYS 85 Y CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf17 G SG CYS 88 Y CYS 108 1_555 G SG CYS 95 Y CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 E ND2 ASN 57 R ASN 77 1_555 K C1 NAG . R NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 E ND2 ASN 79 R ASN 99 1_555 J C1 NAG . R NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale3 E ND2 ASN 157 R ASN 177 1_555 I C1 NAG . R NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale4 E ND2 ASN 178 R ASN 198 1_555 H C1 NAG . R NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 F ND2 ASN 52 X ASN 52 1_555 GA C1 NAG . X NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 F ND2 ASN 78 X ASN 78 1_555 FA C1 NAG . X NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale7 G ND2 ASN 23 Y ASN 43 1_555 HA C1 NAG . Y NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 384 n n 
C1 O1 NAG sing 385 n n 
C1 O5 NAG sing 386 n n 
C1 H1 NAG sing 387 n n 
C2 C3 NAG sing 388 n n 
C2 N2 NAG sing 389 n n 
C2 H2 NAG sing 390 n n 
C3 C4 NAG sing 391 n n 
C3 O3 NAG sing 392 n n 
C3 H3 NAG sing 393 n n 
C4 C5 NAG sing 394 n n 
C4 O4 NAG sing 395 n n 
C4 H4 NAG sing 396 n n 
C5 C6 NAG sing 397 n n 
C5 O5 NAG sing 398 n n 
C5 H5 NAG sing 399 n n 
C6 O6 NAG sing 400 n n 
C6 H61 NAG sing 401 n n 
C6 H62 NAG sing 402 n n 
C7 C8 NAG sing 403 n n 
C7 N2 NAG sing 404 n n 
C7 O7 NAG doub 405 n n 
C8 H81 NAG sing 406 n n 
C8 H82 NAG sing 407 n n 
C8 H83 NAG sing 408 n n 
N2 HN2 NAG sing 409 n n 
O1 HO1 NAG sing 410 n n 
O3 HO3 NAG sing 411 n n 
O4 HO4 NAG sing 412 n n 
O6 HO6 NAG sing 413 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7XW5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 8 NAG R 1 801 801 NAG NAG . 
I 8 NAG R 1 802 802 NAG NAG . 
J 8 NAG R 1 803 803 NAG NAG . 
K 8 NAG R 1 804 804 NAG NAG . 
L 9 HOI R 1 805 805 HOI HOI . 
M 10 CLR R 1 806 806 CLR CLR . 
N 10 CLR R 1 807 807 CLR CLR . 
O 10 CLR R 1 808 808 CLR CLR . 
P 10 CLR R 1 809 809 CLR CLR . 
Q 10 CLR R 1 810 810 CLR CLR . 
R 10 CLR R 1 811 811 CLR CLR . 
S 10 CLR R 1 812 812 CLR CLR . 
T 10 CLR R 1 813 813 CLR CLR . 
U 10 CLR R 1 814 814 CLR CLR . 
V 10 CLR R 1 815 815 CLR CLR . 
W 10 CLR R 1 816 816 CLR CLR . 
X 10 CLR R 1 817 817 CLR CLR . 
Y 10 CLR R 1 818 818 CLR CLR . 
Z 10 CLR R 1 819 819 CLR CLR . 
AA 11 PLM R 1 820 820 PLM PLM . 
BA 11 PLM R 1 821 821 PLM PLM . 
CA 11 PLM R 1 822 822 PLM PLM . 
DA 11 PLM R 1 823 823 PLM PLM . 
EA 11 PLM R 1 824 824 PLM PLM . 
FA 8 NAG X 1 201 201 NAG NAG . 
GA 8 NAG X 1 202 202 NAG NAG . 
HA 8 NAG Y 1 201 201 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 8 133.128 155.637 224.199 1 91.32 ? C1 NAG 802 R 1 
HETATM 2 C C2 NAG . . . I 8 132.107 156.723 223.796 1 88.9 ? C2 NAG 802 R 1 
HETATM 3 C C3 NAG . . . I 8 131.796 157.56 225.045 1 89.97 ? C3 NAG 802 R 1 
HETATM 4 C C4 NAG . . . I 8 131.255 156.661 226.17 1 92.37 ? C4 NAG 802 R 1 
HETATM 5 C C5 NAG . . . I 8 132.178 155.462 226.475 1 91.84 ? C5 NAG 802 R 1 
HETATM 6 C C6 NAG . . . I 8 131.522 154.445 227.418 1 90.99 ? C6 NAG 802 R 1 
HETATM 7 C C7 NAG . . . I 8 132.28 157.346 221.434 1 90 ? C7 NAG 802 R 1 
HETATM 8 C C8 NAG . . . I 8 132.861 158.323 220.402 1 91.34 ? C8 NAG 802 R 1 
HETATM 9 N N2 NAG . . . I 8 132.617 157.553 222.701 1 87.06 ? N2 NAG 802 R 1 
HETATM 10 O O3 NAG . . . I 8 130.802 158.58 224.756 1 88.25 ? O3 NAG 802 R 1 
HETATM 11 O O4 NAG . . . I 8 131.149 157.495 227.35 1 91.14 ? O4 NAG 802 R 1 
HETATM 12 O O5 NAG . . . I 8 132.527 154.77 225.211 1 92.87 ? O5 NAG 802 R 1 
HETATM 13 O O6 NAG . . . I 8 132.474 153.425 227.766 1 90.97 ? O6 NAG 802 R 1 
HETATM 14 O O7 NAG . . . I 8 131.538 156.423 221.105 1 88.82 ? O7 NAG 802 R 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           418 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#