data_7XW5
#
_model_server_result.job_id            SHYprAnieUcDa-t_2r7kiw 
_model_server_result.datetime_utc      '2025-08-31 12:14:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":805}' 
#
_entry.id    7XW5 
#
_exptl.entry_id    7XW5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.579 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[4-[[2-methoxy-5-[(2~{S})-5-oxidanyl-4-oxidanylidene-3-(phenylmethyl)-1,2-dihydroquinazolin-2-yl]phenyl]methoxy]phenyl]ethanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 N CYS 22 1_555 D SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 D SG CYS 99 N CYS 99 1_555 D SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf3 E SG CYS 11 R CYS 31 1_555 E SG CYS 21 R CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 E SG CYS 263 R CYS 283 1_555 E SG CYS 328 R CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 E SG CYS 264 R CYS 284 1_555 E SG CYS 338 R CYS 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 E SG CYS 424 R CYS 494 1_555 E SG CYS 499 R CYS 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 F SG CYS 7 X CYS 7 1_555 F SG CYS 31 X CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 F SG CYS 10 X CYS 10 1_555 F SG CYS 60 X CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf9 F SG CYS 28 X CYS 28 1_555 F SG CYS 82 X CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 F SG CYS 32 X CYS 32 1_555 F SG CYS 84 X CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf11 F SG CYS 59 X CYS 59 1_555 F SG CYS 87 X CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 G SG CYS 2 Y CYS 22 1_555 G SG CYS 52 Y CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 G SG CYS 16 Y CYS 36 1_555 G SG CYS 67 Y CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 G SG CYS 19 Y CYS 39 1_555 G SG CYS 105 Y CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf15 G SG CYS 27 Y CYS 47 1_555 G SG CYS 83 Y CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf16 G SG CYS 31 Y CYS 51 1_555 G SG CYS 85 Y CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf17 G SG CYS 88 Y CYS 108 1_555 G SG CYS 95 Y CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 E ND2 ASN 57 R ASN 77 1_555 K C1 NAG . R NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 E ND2 ASN 79 R ASN 99 1_555 J C1 NAG . R NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale3 E ND2 ASN 157 R ASN 177 1_555 I C1 NAG . R NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale4 E ND2 ASN 178 R ASN 198 1_555 H C1 NAG . R NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale5 F ND2 ASN 52 X ASN 52 1_555 GA C1 NAG . X NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 F ND2 ASN 78 X ASN 78 1_555 FA C1 NAG . X NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale7 G ND2 ASN 23 Y ASN 43 1_555 HA C1 NAG . Y NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
#
_chem_comp.formula           'C31 H29 N3 O5' 
_chem_comp.formula_weight    523.579 
_chem_comp.id                HOI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[4-[[2-methoxy-5-[(2~{S})-5-oxidanyl-4-oxidanylidene-3-(phenylmethyl)-1,2-dihydroquinazolin-2-yl]phenyl]methoxy]phenyl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C21 HOI sing 227 n y 
C20 C19 HOI doub 228 n y 
O3 C19 HOI sing 229 n n 
C21 C22 HOI doub 230 n y 
C19 C18 HOI sing 231 n y 
C12 C13 HOI doub 232 n y 
C12 C11 HOI sing 233 n y 
C31 O5 HOI sing 234 n n 
O5 C11 HOI sing 235 n n 
C22 C17 HOI sing 236 n y 
C18 C17 HOI doub 237 n y 
C18 C23 HOI sing 238 n n 
C13 C14 HOI sing 239 n y 
C11 C10 HOI doub 240 n y 
O4 C23 HOI doub 241 n n 
C17 N2 HOI sing 242 n n 
C23 N3 HOI sing 243 n n 
C10 C9 HOI sing 244 n n 
C10 C15 HOI sing 245 n y 
C14 C15 HOI doub 246 n y 
C14 C16 HOI sing 247 n n 
C9 O2 HOI sing 248 n n 
N3 C16 HOI sing 249 n n 
N3 C24 HOI sing 250 n n 
N2 C16 HOI sing 251 n n 
C24 C25 HOI sing 252 n n 
O2 C6 HOI sing 253 n n 
C6 C7 HOI doub 254 n y 
C6 C5 HOI sing 255 n y 
C25 C30 HOI doub 256 n y 
C25 C26 HOI sing 257 n y 
C7 C8 HOI sing 258 n y 
C30 C29 HOI sing 259 n y 
C5 C4 HOI doub 260 n y 
C26 C27 HOI doub 261 n y 
C8 C3 HOI doub 262 n y 
C29 C28 HOI doub 263 n y 
C4 C3 HOI sing 264 n y 
C27 C28 HOI sing 265 n y 
C3 N1 HOI sing 266 n n 
N1 C2 HOI sing 267 n n 
O1 C2 HOI doub 268 n n 
C2 C1 HOI sing 269 n n 
N1 H1 HOI sing 270 n n 
C4 H2 HOI sing 271 n n 
C5 H3 HOI sing 272 n n 
C7 H4 HOI sing 273 n n 
C8 H5 HOI sing 274 n n 
C13 H6 HOI sing 275 n n 
C15 H7 HOI sing 276 n n 
C20 H8 HOI sing 277 n n 
C21 H9 HOI sing 278 n n 
C22 H10 HOI sing 279 n n 
C24 H11 HOI sing 280 n n 
C24 H12 HOI sing 281 n n 
C26 H13 HOI sing 282 n n 
C28 H14 HOI sing 283 n n 
C1 H15 HOI sing 284 n n 
C1 H16 HOI sing 285 n n 
C1 H17 HOI sing 286 n n 
N2 H18 HOI sing 287 n n 
O3 H19 HOI sing 288 n n 
C9 H20 HOI sing 289 n n 
C9 H21 HOI sing 290 n n 
C12 H22 HOI sing 291 n n 
C16 H23 HOI sing 292 n n 
C27 H24 HOI sing 293 n n 
C29 H25 HOI sing 294 n n 
C30 H26 HOI sing 295 n n 
C31 H27 HOI sing 296 n n 
C31 H28 HOI sing 297 n n 
C31 H29 HOI sing 298 n n 
#
_atom_sites.entry_id                     7XW5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 8 NAG R 1 801 801 NAG NAG . 
I 8 NAG R 1 802 802 NAG NAG . 
J 8 NAG R 1 803 803 NAG NAG . 
K 8 NAG R 1 804 804 NAG NAG . 
L 9 HOI R 1 805 805 HOI HOI . 
M 10 CLR R 1 806 806 CLR CLR . 
N 10 CLR R 1 807 807 CLR CLR . 
O 10 CLR R 1 808 808 CLR CLR . 
P 10 CLR R 1 809 809 CLR CLR . 
Q 10 CLR R 1 810 810 CLR CLR . 
R 10 CLR R 1 811 811 CLR CLR . 
S 10 CLR R 1 812 812 CLR CLR . 
T 10 CLR R 1 813 813 CLR CLR . 
U 10 CLR R 1 814 814 CLR CLR . 
V 10 CLR R 1 815 815 CLR CLR . 
W 10 CLR R 1 816 816 CLR CLR . 
X 10 CLR R 1 817 817 CLR CLR . 
Y 10 CLR R 1 818 818 CLR CLR . 
Z 10 CLR R 1 819 819 CLR CLR . 
AA 11 PLM R 1 820 820 PLM PLM . 
BA 11 PLM R 1 821 821 PLM PLM . 
CA 11 PLM R 1 822 822 PLM PLM . 
DA 11 PLM R 1 823 823 PLM PLM . 
EA 11 PLM R 1 824 824 PLM PLM . 
FA 8 NAG X 1 201 201 NAG NAG . 
GA 8 NAG X 1 202 202 NAG NAG . 
HA 8 NAG Y 1 201 201 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 HOI . . . L 9 160.853 177.402 175.786 1 77.84 ? N1 HOI 805 R 1 
HETATM 2 N N3 HOI . . . L 9 165.674 173.227 169.678 1 82.61 ? N3 HOI 805 R 1 
HETATM 3 C C4 HOI . . . L 9 160.535 176.164 173.718 1 76.8 ? C4 HOI 805 R 1 
HETATM 4 C C5 HOI . . . L 9 160.731 175.992 172.339 1 74.69 ? C5 HOI 805 R 1 
HETATM 5 C C6 HOI . . . L 9 161.414 176.969 171.602 1 74.04 ? C6 HOI 805 R 1 
HETATM 6 C C7 HOI . . . L 9 161.894 178.108 172.255 1 75.68 ? C7 HOI 805 R 1 
HETATM 7 C C8 HOI . . . L 9 161.698 178.276 173.636 1 75.52 ? C8 HOI 805 R 1 
HETATM 8 C C10 HOI . . . L 9 161.418 174.74 168.999 1 79.31 ? C10 HOI 805 R 1 
HETATM 9 C C13 HOI . . . L 9 162.645 172.398 168.048 1 79.64 ? C13 HOI 805 R 1 
HETATM 10 C C15 HOI . . . L 9 162.61 174.273 169.579 1 79.65 ? C15 HOI 805 R 1 
HETATM 11 C C17 HOI . . . L 9 165.253 170.735 168.493 1 75.31 ? C17 HOI 805 R 1 
HETATM 12 C C20 HOI . . . L 9 166.497 170.064 166.08 1 77.36 ? C20 HOI 805 R 1 
HETATM 13 C C21 HOI . . . L 9 165.429 169.284 166.547 1 76.2 ? C21 HOI 805 R 1 
HETATM 14 C C22 HOI . . . L 9 164.819 169.621 167.765 1 73.87 ? C22 HOI 805 R 1 
HETATM 15 C C24 HOI . . . L 9 165.805 174.587 170.242 1 78.45 ? C24 HOI 805 R 1 
HETATM 16 C C26 HOI . . . L 9 166.506 174.069 172.608 1 77.25 ? C26 HOI 805 R 1 
HETATM 17 C C28 HOI . . . L 9 165.637 175.335 174.497 1 75.04 ? C28 HOI 805 R 1 
HETATM 18 C C1 HOI . . . L 9 161.132 177.909 178.151 1 76.35 ? C1 HOI 805 R 1 
HETATM 19 O O1 HOI . . . L 9 162.652 178.648 176.457 1 80.8 ? O1 HOI 805 R 1 
HETATM 20 C C2 HOI . . . L 9 161.633 178.041 176.726 1 79.18 ? C2 HOI 805 R 1 
HETATM 21 N N2 HOI . . . L 9 164.667 171.103 169.679 1 75.36 ? N2 HOI 805 R 1 
HETATM 22 O O2 HOI . . . L 9 161.622 176.855 170.247 1 76.98 ? O2 HOI 805 R 1 
HETATM 23 C C3 HOI . . . L 9 161.038 177.29 174.383 1 77.7 ? C3 HOI 805 R 1 
HETATM 24 O O3 HOI . . . L 9 167.915 171.967 166.332 1 77.4 ? O3 HOI 805 R 1 
HETATM 25 O O4 HOI . . . L 9 167.606 173.373 168.471 1 78.43 ? O4 HOI 805 R 1 
HETATM 26 O O5 HOI . . . L 9 159.489 174.213 167.715 1 79.19 ? O5 HOI 805 R 1 
HETATM 27 C C9 HOI . . . L 9 160.777 176.066 169.385 1 77.64 ? C9 HOI 805 R 1 
HETATM 28 C C11 HOI . . . L 9 160.781 173.938 168.05 1 76.78 ? C11 HOI 805 R 1 
HETATM 29 C C12 HOI . . . L 9 161.415 172.806 167.531 1 75.95 ? C12 HOI 805 R 1 
HETATM 30 C C14 HOI . . . L 9 163.228 173.082 169.139 1 81.02 ? C14 HOI 805 R 1 
HETATM 31 C C16 HOI . . . L 9 164.428 172.522 169.93 1 77.93 ? C16 HOI 805 R 1 
HETATM 32 C C18 HOI . . . L 9 166.259 171.536 167.998 1 77.62 ? C18 HOI 805 R 1 
HETATM 33 C C19 HOI . . . L 9 166.908 171.19 166.806 1 77.78 ? C19 HOI 805 R 1 
HETATM 34 C C23 HOI . . . L 9 166.582 172.773 168.736 1 80.36 ? C23 HOI 805 R 1 
HETATM 35 C C25 HOI . . . L 9 165.643 174.744 171.746 1 77.79 ? C25 HOI 805 R 1 
HETATM 36 C C27 HOI . . . L 9 166.516 174.379 173.975 1 78 ? C27 HOI 805 R 1 
HETATM 37 C C29 HOI . . . L 9 164.755 175.997 173.643 1 74.94 ? C29 HOI 805 R 1 
HETATM 38 C C30 HOI . . . L 9 164.773 175.716 172.271 1 77.16 ? C30 HOI 805 R 1 
HETATM 39 C C31 HOI . . . L 9 158.557 173.126 167.688 1 75.81 ? C31 HOI 805 R 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          51 
_model_server_stats.element_count           39 
#