data_7XWV # _model_server_result.job_id bsuG2oLm8KPYq73GvtSDSQ _model_server_result.datetime_utc '2024-12-26 23:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xwv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":305}' # _entry.id 7XWV # _exptl.entry_id 7XWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XWV _cell.length_a 132.471 _cell.length_b 132.471 _cell.length_c 241.533 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 66.2355 -114.723251 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 132.471 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 7XWV _atom_sites.fract_transf_matrix[1][1] 0.007549 _atom_sites.fract_transf_matrix[1][2] 0.004358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V55 A 1 301 301 V55 V55 . D 3 GOL A 1 302 1 GOL GOL . E 3 GOL A 1 303 3 GOL GOL . F 4 COA A 1 304 1 COA COA . G 2 V55 B 1 301 301 V55 V55 . H 3 GOL B 1 302 2 GOL GOL . I 3 GOL B 1 303 4 GOL GOL . J 5 IMD B 1 304 1 IMD IMD . K 4 COA B 1 305 2 COA COA . L 6 HOH A 1 401 86 HOH HOH . L 6 HOH A 2 402 115 HOH HOH . L 6 HOH A 3 403 146 HOH HOH . L 6 HOH A 4 404 114 HOH HOH . L 6 HOH A 5 405 14 HOH HOH . L 6 HOH A 6 406 94 HOH HOH . L 6 HOH A 7 407 135 HOH HOH . L 6 HOH A 8 408 118 HOH HOH . L 6 HOH A 9 409 139 HOH HOH . L 6 HOH A 10 410 31 HOH HOH . L 6 HOH A 11 411 30 HOH HOH . L 6 HOH A 12 412 37 HOH HOH . L 6 HOH A 13 413 81 HOH HOH . L 6 HOH A 14 414 11 HOH HOH . L 6 HOH A 15 415 152 HOH HOH . L 6 HOH A 16 416 75 HOH HOH . L 6 HOH A 17 417 99 HOH HOH . L 6 HOH A 18 418 128 HOH HOH . L 6 HOH A 19 419 160 HOH HOH . L 6 HOH A 20 420 119 HOH HOH . L 6 HOH A 21 421 40 HOH HOH . L 6 HOH A 22 422 148 HOH HOH . L 6 HOH A 23 423 67 HOH HOH . L 6 HOH A 24 424 71 HOH HOH . L 6 HOH A 25 425 50 HOH HOH . L 6 HOH A 26 426 4 HOH HOH . L 6 HOH A 27 427 131 HOH HOH . L 6 HOH A 28 428 35 HOH HOH . L 6 HOH A 29 429 19 HOH HOH . L 6 HOH A 30 430 164 HOH HOH . L 6 HOH A 31 431 124 HOH HOH . L 6 HOH A 32 432 126 HOH HOH . L 6 HOH A 33 433 9 HOH HOH . L 6 HOH A 34 434 34 HOH HOH . L 6 HOH A 35 435 161 HOH HOH . L 6 HOH A 36 436 123 HOH HOH . L 6 HOH A 37 437 108 HOH HOH . L 6 HOH A 38 438 145 HOH HOH . L 6 HOH A 39 439 3 HOH HOH . L 6 HOH A 40 440 111 HOH HOH . L 6 HOH A 41 441 104 HOH HOH . L 6 HOH A 42 442 5 HOH HOH . L 6 HOH A 43 443 16 HOH HOH . L 6 HOH A 44 444 49 HOH HOH . L 6 HOH A 45 445 26 HOH HOH . L 6 HOH A 46 446 102 HOH HOH . L 6 HOH A 47 447 141 HOH HOH . L 6 HOH A 48 448 15 HOH HOH . L 6 HOH A 49 449 77 HOH HOH . L 6 HOH A 50 450 25 HOH HOH . L 6 HOH A 51 451 149 HOH HOH . L 6 HOH A 52 452 73 HOH HOH . L 6 HOH A 53 453 79 HOH HOH . L 6 HOH A 54 454 18 HOH HOH . L 6 HOH A 55 455 121 HOH HOH . L 6 HOH A 56 456 78 HOH HOH . L 6 HOH A 57 457 56 HOH HOH . L 6 HOH A 58 458 61 HOH HOH . L 6 HOH A 59 459 116 HOH HOH . L 6 HOH A 60 460 69 HOH HOH . L 6 HOH A 61 461 22 HOH HOH . L 6 HOH A 62 462 58 HOH HOH . L 6 HOH A 63 463 129 HOH HOH . L 6 HOH A 64 464 6 HOH HOH . L 6 HOH A 65 465 28 HOH HOH . L 6 HOH A 66 466 144 HOH HOH . L 6 HOH A 67 467 154 HOH HOH . L 6 HOH A 68 468 7 HOH HOH . L 6 HOH A 69 469 107 HOH HOH . L 6 HOH A 70 470 100 HOH HOH . L 6 HOH A 71 471 127 HOH HOH . L 6 HOH A 72 472 85 HOH HOH . L 6 HOH A 73 473 106 HOH HOH . L 6 HOH A 74 474 162 HOH HOH . L 6 HOH A 75 475 140 HOH HOH . L 6 HOH A 76 476 59 HOH HOH . L 6 HOH A 77 477 133 HOH HOH . L 6 HOH A 78 478 155 HOH HOH . L 6 HOH A 79 479 132 HOH HOH . L 6 HOH A 80 480 97 HOH HOH . L 6 HOH A 81 481 2 HOH HOH . M 6 HOH B 1 401 120 HOH HOH . M 6 HOH B 2 402 72 HOH HOH . M 6 HOH B 3 403 41 HOH HOH . M 6 HOH B 4 404 103 HOH HOH . M 6 HOH B 5 405 43 HOH HOH . M 6 HOH B 6 406 168 HOH HOH . M 6 HOH B 7 407 142 HOH HOH . M 6 HOH B 8 408 52 HOH HOH . M 6 HOH B 9 409 159 HOH HOH . M 6 HOH B 10 410 84 HOH HOH . M 6 HOH B 11 411 13 HOH HOH . M 6 HOH B 12 412 130 HOH HOH . M 6 HOH B 13 413 65 HOH HOH . M 6 HOH B 14 414 32 HOH HOH . M 6 HOH B 15 415 70 HOH HOH . M 6 HOH B 16 416 138 HOH HOH . M 6 HOH B 17 417 21 HOH HOH . M 6 HOH B 18 418 101 HOH HOH . M 6 HOH B 19 419 68 HOH HOH . M 6 HOH B 20 420 88 HOH HOH . M 6 HOH B 21 421 169 HOH HOH . M 6 HOH B 22 422 125 HOH HOH . M 6 HOH B 23 423 76 HOH HOH . M 6 HOH B 24 424 89 HOH HOH . M 6 HOH B 25 425 66 HOH HOH . M 6 HOH B 26 426 47 HOH HOH . M 6 HOH B 27 427 33 HOH HOH . M 6 HOH B 28 428 87 HOH HOH . M 6 HOH B 29 429 8 HOH HOH . M 6 HOH B 30 430 137 HOH HOH . M 6 HOH B 31 431 170 HOH HOH . M 6 HOH B 32 432 122 HOH HOH . M 6 HOH B 33 433 96 HOH HOH . M 6 HOH B 34 434 38 HOH HOH . M 6 HOH B 35 435 83 HOH HOH . M 6 HOH B 36 436 55 HOH HOH . M 6 HOH B 37 437 143 HOH HOH . M 6 HOH B 38 438 20 HOH HOH . M 6 HOH B 39 439 117 HOH HOH . M 6 HOH B 40 440 44 HOH HOH . M 6 HOH B 41 441 12 HOH HOH . M 6 HOH B 42 442 23 HOH HOH . M 6 HOH B 43 443 46 HOH HOH . M 6 HOH B 44 444 24 HOH HOH . M 6 HOH B 45 445 105 HOH HOH . M 6 HOH B 46 446 63 HOH HOH . M 6 HOH B 47 447 57 HOH HOH . M 6 HOH B 48 448 51 HOH HOH . M 6 HOH B 49 449 48 HOH HOH . M 6 HOH B 50 450 134 HOH HOH . M 6 HOH B 51 451 27 HOH HOH . M 6 HOH B 52 452 74 HOH HOH . M 6 HOH B 53 453 10 HOH HOH . M 6 HOH B 54 454 113 HOH HOH . M 6 HOH B 55 455 153 HOH HOH . M 6 HOH B 56 456 29 HOH HOH . M 6 HOH B 57 457 93 HOH HOH . M 6 HOH B 58 458 54 HOH HOH . M 6 HOH B 59 459 60 HOH HOH . M 6 HOH B 60 460 17 HOH HOH . M 6 HOH B 61 461 112 HOH HOH . M 6 HOH B 62 462 62 HOH HOH . M 6 HOH B 63 463 92 HOH HOH . M 6 HOH B 64 464 39 HOH HOH . M 6 HOH B 65 465 90 HOH HOH . M 6 HOH B 66 466 82 HOH HOH . M 6 HOH B 67 467 1 HOH HOH . M 6 HOH B 68 468 110 HOH HOH . M 6 HOH B 69 469 147 HOH HOH . M 6 HOH B 70 470 167 HOH HOH . M 6 HOH B 71 471 158 HOH HOH . M 6 HOH B 72 472 156 HOH HOH . M 6 HOH B 73 473 163 HOH HOH . M 6 HOH B 74 474 91 HOH HOH . M 6 HOH B 75 475 165 HOH HOH . M 6 HOH B 76 476 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . K 4 40.158 -19.862 -2.598 1 36.11 ? N1A COA 305 B 1 HETATM 2 C C2A COA . . . K 4 39.339 -18.827 -2.347 1 34.68 ? C2A COA 305 B 1 HETATM 3 N N3A COA . . . K 4 39.014 -18.285 -1.175 1 38.91 ? N3A COA 305 B 1 HETATM 4 C C4A COA . . . K 4 39.657 -18.901 -0.166 1 41.1 ? C4A COA 305 B 1 HETATM 5 C C5A COA . . . K 4 40.547 -19.949 -0.264 1 38.47 ? C5A COA 305 B 1 HETATM 6 C C6A COA . . . K 4 40.807 -20.446 -1.558 1 39.56 ? C6A COA 305 B 1 HETATM 7 N N6A COA . . . K 4 41.671 -21.43 -1.808 1 45.35 ? N6A COA 305 B 1 HETATM 8 N N7A COA . . . K 4 41.015 -20.299 1.002 1 38.71 ? N7A COA 305 B 1 HETATM 9 C C8A COA . . . K 4 40.417 -19.468 1.829 1 41.89 ? C8A COA 305 B 1 HETATM 10 N N9A COA . . . K 4 39.574 -18.603 1.166 1 46.53 ? N9A COA 305 B 1 HETATM 11 C C1B COA . . . K 4 38.76 -17.547 1.709 1 56.12 ? C1B COA 305 B 1 HETATM 12 C C2B COA . . . K 4 37.272 -17.771 1.438 1 62.92 ? C2B COA 305 B 1 HETATM 13 O O2B COA . . . K 4 36.875 -17.079 0.266 1 64.04 ? O2B COA 305 B 1 HETATM 14 C C3B COA . . . K 4 36.611 -17.263 2.725 1 61.12 ? C3B COA 305 B 1 HETATM 15 O O3B COA . . . K 4 36.252 -15.883 2.69 1 67.56 ? O3B COA 305 B 1 HETATM 16 P P3B COA . . . K 4 35.162 -15.469 3.831 1 61.27 ? P3B COA 305 B 1 HETATM 17 O O7A COA . . . K 4 35.937 -15.112 5.097 1 52.75 ? O7A COA 305 B 1 HETATM 18 O O8A COA . . . K 4 34.446 -14.27 3.226 1 70.27 ? O8A COA 305 B 1 HETATM 19 O O9A COA . . . K 4 34.21 -16.659 4.038 1 59.95 ? O9A COA 305 B 1 HETATM 20 C C4B COA . . . K 4 37.685 -17.485 3.784 1 63.75 ? C4B COA 305 B 1 HETATM 21 O O4B COA . . . K 4 38.963 -17.493 3.102 1 61.15 ? O4B COA 305 B 1 HETATM 22 C C5B COA . . . K 4 37.531 -18.778 4.528 1 65.55 ? C5B COA 305 B 1 HETATM 23 O O5B COA . . . K 4 38.675 -18.956 5.377 1 69.98 ? O5B COA 305 B 1 HETATM 24 P P1A COA . . . K 4 38.467 -20.137 6.432 1 76.53 ? P1A COA 305 B 1 HETATM 25 O O1A COA . . . K 4 37.441 -19.711 7.432 1 75.25 ? O1A COA 305 B 1 HETATM 26 O O2A COA . . . K 4 38.248 -21.42 5.699 1 69.84 ? O2A COA 305 B 1 HETATM 27 O O3A COA . . . K 4 39.909 -20.156 7.121 1 78.43 ? O3A COA 305 B 1 HETATM 28 P P2A COA . . . K 4 40.499 -20.91 8.402 1 83.66 ? P2A COA 305 B 1 HETATM 29 O O4A COA . . . K 4 39.43 -21.73 9.048 1 85.91 ? O4A COA 305 B 1 HETATM 30 O O5A COA . . . K 4 41.28 -19.937 9.224 1 88.18 ? O5A COA 305 B 1 HETATM 31 O O6A COA . . . K 4 41.542 -21.892 7.682 1 83.62 ? O6A COA 305 B 1 HETATM 32 C CBP COA . . . K 4 41.854 -23.502 5.886 1 67.13 ? CBP COA 305 B 1 HETATM 33 C CCP COA . . . K 4 41.076 -23.163 7.161 1 72.43 ? CCP COA 305 B 1 HETATM 34 C CDP COA . . . K 4 43.04 -22.536 5.706 1 67.98 ? CDP COA 305 B 1 HETATM 35 C CEP COA . . . K 4 42.383 -24.942 6.016 1 68.25 ? CEP COA 305 B 1 HETATM 36 C CAP COA . . . K 4 40.876 -23.357 4.702 1 59.64 ? CAP COA 305 B 1 HETATM 37 O OAP COA . . . K 4 40.722 -21.964 4.389 1 58.82 ? OAP COA 305 B 1 HETATM 38 C C9P COA . . . K 4 41.219 -24.112 3.428 1 50.96 ? C9P COA 305 B 1 HETATM 39 O O9P COA . . . K 4 41.233 -25.343 3.436 1 53.4 ? O9P COA 305 B 1 HETATM 40 N N8P COA . . . K 4 41.421 -23.388 2.333 1 47.14 ? N8P COA 305 B 1 HETATM 41 C C7P COA . . . K 4 41.627 -23.965 1.012 1 48.06 ? C7P COA 305 B 1 HETATM 42 C C6P COA . . . K 4 42.935 -24.735 0.922 1 48.6 ? C6P COA 305 B 1 HETATM 43 C C5P COA . . . K 4 43.124 -25.431 -0.413 1 49.15 ? C5P COA 305 B 1 HETATM 44 O O5P COA . . . K 4 42.376 -26.343 -0.75 1 51.78 ? O5P COA 305 B 1 HETATM 45 N N4P COA . . . K 4 44.142 -25.017 -1.183 1 45.86 ? N4P COA 305 B 1 HETATM 46 C C3P COA . . . K 4 44.503 -25.59 -2.471 1 41.94 ? C3P COA 305 B 1 HETATM 47 C C2P COA . . . K 4 43.965 -24.792 -3.633 1 43.01 ? C2P COA 305 B 1 HETATM 48 S S1P COA . . . K 4 45.013 -24.919 -5.108 1 32.44 ? S1P COA 305 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 1114 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 48 #