data_7XWZ # _model_server_result.job_id 22gXbyY6j85sb5tauQl70g _model_server_result.datetime_utc '2024-11-21 09:11:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 7XWZ # _exptl.entry_id 7XWZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.605 _cell.angle_gamma 90 _cell.entry_id 7XWZ _cell.length_a 53.848 _cell.length_b 39.119 _cell.length_c 84.157 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,J,K,M,N 1 1 B,H,I,L 2 1 E,F,O 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_354 -x-2,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -96.558419 19.5595 -83.416755 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N3 C 1 C C 1 1_555 D N1 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 C 1 C C 1 1_555 D O6 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 C 1 C C 1 1_555 D N2 G 7 D G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 A 2 C A 2 1_555 D N3 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 A 2 C A 2 1_555 D O4 U 6 D U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 C 3 C C 3 1_555 D N1 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N4 C 3 C C 3 1_555 D O6 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O2 C 3 C C 3 1_555 D N2 G 5 D G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 U 4 C U 4 1_555 D N1 A 4 D A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O4 U 4 C U 4 1_555 D N6 A 4 D A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 G 5 C G 5 1_555 D N3 C 3 D C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N2 G 5 C G 5 1_555 D O2 C 3 D C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O6 G 5 C G 5 1_555 D N4 C 3 D C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 A 6 C A 6 1_555 D N3 U 2 D U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N6 A 6 C A 6 1_555 D O4 U 2 D U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N3 C 7 C C 7 1_555 D N1 G 1 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N4 C 7 C C 7 1_555 D O6 G 1 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O2 C 7 C C 7 1_555 D N2 G 1 D G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E N3 C 1 E C 1 1_555 F N1 G 7 F G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 E N4 C 1 E C 1 1_555 F O6 G 7 F G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 E O2 C 1 E C 1 1_555 F N2 G 7 F G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 E N1 A 2 E A 2 1_555 F N3 U 6 F U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 E N6 A 2 E A 2 1_555 F O4 U 6 F U 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 E N3 C 3 E C 3 1_555 F N1 G 5 F G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 E N4 C 3 E C 3 1_555 F O6 G 5 F G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 E O2 C 3 E C 3 1_555 F N2 G 5 F G 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 E N3 U 4 E U 4 1_555 F N1 A 4 F A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 E O4 U 4 E U 4 1_555 F N6 A 4 F A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 E N1 G 5 E G 5 1_555 F N3 C 3 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 E N2 G 5 E G 5 1_555 F O2 C 3 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 E O6 G 5 E G 5 1_555 F N4 C 3 F C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 E N1 A 6 E A 6 1_555 F N3 U 2 F U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 E N6 A 6 E A 6 1_555 F O4 U 2 F U 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 E N3 C 7 E C 7 1_555 F N1 G 1 F G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 E N4 C 7 E C 7 1_555 F O6 G 1 F G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 E O2 C 7 E C 7 1_555 F N2 G 1 F G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 145 n n C1 C2 EDO sing 146 n n C1 H11 EDO sing 147 n n C1 H12 EDO sing 148 n n O1 HO1 EDO sing 149 n n C2 O2 EDO sing 150 n n C2 H21 EDO sing 151 n n C2 H22 EDO sing 152 n n O2 HO2 EDO sing 153 n n # _atom_sites.entry_id 7XWZ _atom_sites.fract_transf_matrix[1][1] 0.018571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00248 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO A 1 201 2 EDO EDO . H 4 EDO B 1 201 3 EDO EDO . I 5 GOL B 1 202 4 GOL GOL . J 4 EDO C 1 101 1 EDO EDO . K 6 HOH A 1 301 16 HOH HOH . K 6 HOH A 2 302 47 HOH HOH . K 6 HOH A 3 303 42 HOH HOH . K 6 HOH A 4 304 18 HOH HOH . K 6 HOH A 5 305 3 HOH HOH . K 6 HOH A 6 306 36 HOH HOH . K 6 HOH A 7 307 80 HOH HOH . K 6 HOH A 8 308 11 HOH HOH . K 6 HOH A 9 309 7 HOH HOH . K 6 HOH A 10 310 24 HOH HOH . K 6 HOH A 11 311 45 HOH HOH . K 6 HOH A 12 312 21 HOH HOH . K 6 HOH A 13 313 72 HOH HOH . K 6 HOH A 14 314 1 HOH HOH . K 6 HOH A 15 315 20 HOH HOH . K 6 HOH A 16 316 40 HOH HOH . K 6 HOH A 17 317 13 HOH HOH . K 6 HOH A 18 318 37 HOH HOH . K 6 HOH A 19 319 6 HOH HOH . K 6 HOH A 20 320 44 HOH HOH . K 6 HOH A 21 321 12 HOH HOH . K 6 HOH A 22 322 5 HOH HOH . K 6 HOH A 23 323 48 HOH HOH . K 6 HOH A 24 324 33 HOH HOH . K 6 HOH A 25 325 78 HOH HOH . K 6 HOH A 26 326 70 HOH HOH . K 6 HOH A 27 327 46 HOH HOH . K 6 HOH A 28 328 2 HOH HOH . K 6 HOH A 29 329 19 HOH HOH . K 6 HOH A 30 330 41 HOH HOH . K 6 HOH A 31 331 73 HOH HOH . K 6 HOH A 32 332 85 HOH HOH . K 6 HOH A 33 333 50 HOH HOH . K 6 HOH A 34 334 34 HOH HOH . K 6 HOH A 35 335 81 HOH HOH . K 6 HOH A 36 336 71 HOH HOH . K 6 HOH A 37 337 38 HOH HOH . L 6 HOH B 1 301 31 HOH HOH . L 6 HOH B 2 302 30 HOH HOH . L 6 HOH B 3 303 22 HOH HOH . L 6 HOH B 4 304 29 HOH HOH . L 6 HOH B 5 305 39 HOH HOH . L 6 HOH B 6 306 4 HOH HOH . L 6 HOH B 7 307 83 HOH HOH . L 6 HOH B 8 308 25 HOH HOH . L 6 HOH B 9 309 17 HOH HOH . L 6 HOH B 10 310 10 HOH HOH . L 6 HOH B 11 311 55 HOH HOH . L 6 HOH B 12 312 15 HOH HOH . L 6 HOH B 13 313 9 HOH HOH . L 6 HOH B 14 314 14 HOH HOH . L 6 HOH B 15 315 64 HOH HOH . L 6 HOH B 16 316 32 HOH HOH . L 6 HOH B 17 317 8 HOH HOH . L 6 HOH B 18 318 27 HOH HOH . L 6 HOH B 19 319 23 HOH HOH . L 6 HOH B 20 320 62 HOH HOH . L 6 HOH B 21 321 58 HOH HOH . L 6 HOH B 22 322 52 HOH HOH . L 6 HOH B 23 323 54 HOH HOH . L 6 HOH B 24 324 53 HOH HOH . L 6 HOH B 25 325 28 HOH HOH . L 6 HOH B 26 326 49 HOH HOH . L 6 HOH B 27 327 35 HOH HOH . L 6 HOH B 28 328 56 HOH HOH . L 6 HOH B 29 329 75 HOH HOH . L 6 HOH B 30 330 43 HOH HOH . L 6 HOH B 31 331 79 HOH HOH . L 6 HOH B 32 332 51 HOH HOH . L 6 HOH B 33 333 63 HOH HOH . L 6 HOH B 34 334 60 HOH HOH . L 6 HOH B 35 335 82 HOH HOH . L 6 HOH B 36 336 59 HOH HOH . L 6 HOH B 37 337 74 HOH HOH . L 6 HOH B 38 338 61 HOH HOH . M 6 HOH C 1 201 67 HOH HOH . M 6 HOH C 2 202 86 HOH HOH . M 6 HOH C 3 203 68 HOH HOH . M 6 HOH C 4 204 57 HOH HOH . M 6 HOH C 5 205 69 HOH HOH . M 6 HOH C 6 206 66 HOH HOH . M 6 HOH C 7 207 65 HOH HOH . N 6 HOH D 1 101 77 HOH HOH . N 6 HOH D 2 102 76 HOH HOH . N 6 HOH D 3 103 84 HOH HOH . O 6 HOH F 1 101 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 9.873 -3.275 -5.45 1 49.06 0 C1 EDO 101 C 1 HETATM 2 O O1 EDO . . . J 4 10.483 -2.329 -4.594 1 47.32 0 O1 EDO 101 C 1 HETATM 3 C C2 EDO . . . J 4 8.462 -3.568 -5.1 1 48.46 0 C2 EDO 101 C 1 HETATM 4 O O2 EDO . . . J 4 8.299 -4.013 -3.768 1 47.69 0 O2 EDO 101 C 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #