data_7XY6 # _model_server_result.job_id dTOtrhfqINs-GQ1sqBA1kA _model_server_result.datetime_utc '2024-11-21 23:08:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7XY6 # _exptl.entry_id 7XY6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 379.436 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[6-azanyl-3,5-dicyano-4-[4-(cyclopropylmethoxy)phenyl]pyridin-2-yl]sulfanylethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XY6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 211 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 78 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 304 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 171 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H17 N5 O2 S' _chem_comp.formula_weight 379.436 _chem_comp.id I5D _chem_comp.mon_nstd_flag . _chem_comp.name 2-[6-azanyl-3,5-dicyano-4-[4-(cyclopropylmethoxy)phenyl]pyridin-2-yl]sulfanylethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 I5D sing 150 n n C14 C13 I5D sing 151 n n C15 C13 I5D sing 152 n n C13 C12 I5D sing 153 n n OP3 C12 I5D sing 154 n n OP3 C11 I5D sing 155 n n C16 C11 I5D doub 156 n y C16 C17 I5D sing 157 n y C11 C10 I5D sing 158 n y N2 CAA I5D trip 159 n n C17 C4' I5D doub 160 n y C10 C5' I5D doub 161 n y CAA C2' I5D sing 162 n n C4' C5' I5D sing 163 n y C4' C3' I5D sing 164 n n C2' C3' I5D doub 165 n y C2' C1' I5D sing 166 n y C3' C18 I5D sing 167 n y S1 C1' I5D sing 168 n n S1 C5 I5D sing 169 n n C1' N9 I5D doub 170 n y C18 C19 I5D sing 171 n n C18 C8 I5D doub 172 n y C19 N3 I5D trip 173 n n N1 C6 I5D sing 174 n n N9 C8 I5D sing 175 n y C5 C6 I5D sing 176 n n C6 O6 I5D doub 177 n n C8 NAA I5D sing 178 n n N1 H1 I5D sing 179 n n N1 H2 I5D sing 180 n n C5 H3 I5D sing 181 n n C5 H4 I5D sing 182 n n C10 H5 I5D sing 183 n n C13 H6 I5D sing 184 n n C15 H7 I5D sing 185 n n C15 H8 I5D sing 186 n n C17 H9 I5D sing 187 n n C12 H10 I5D sing 188 n n C12 H11 I5D sing 189 n n C14 H12 I5D sing 190 n n C14 H13 I5D sing 191 n n C16 H14 I5D sing 192 n n C5' H15 I5D sing 193 n n NAA H16 I5D sing 194 n n NAA H17 I5D sing 195 n n # _atom_sites.entry_id 7XY6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id I5D _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id I5D _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 I5D . . . E 5 127.976 134.378 152.129 1 69.4 ? N1 I5D 501 R 1 HETATM 2 N N3 I5D . . . E 5 124.019 126.13 151.938 1 63.95 ? N3 I5D 501 R 1 HETATM 3 C C5 I5D . . . E 5 125.43 133.941 152.624 1 70.75 ? C5 I5D 501 R 1 HETATM 4 C C6 I5D . . . E 5 126.922 133.503 152.635 1 72.89 ? C6 I5D 501 R 1 HETATM 5 C C8 I5D . . . E 5 124.579 129.496 152.639 1 64.06 ? C8 I5D 501 R 1 HETATM 6 C C10 I5D . . . E 5 122.303 126.512 148.248 1 68.04 ? C10 I5D 501 R 1 HETATM 7 C C13 I5D . . . E 5 122.936 123.997 144.534 1 70.68 ? C13 I5D 501 R 1 HETATM 8 C C15 I5D . . . E 5 122.366 122.582 144.34 1 68.93 ? C15 I5D 501 R 1 HETATM 9 C C17 I5D . . . E 5 124.161 128.631 147.972 1 58.28 ? C17 I5D 501 R 1 HETATM 10 C C1' I5D . . . E 5 124.469 131.421 151.326 1 68.48 ? C1' I5D 501 R 1 HETATM 11 C C11 I5D . . . E 5 122.958 126.776 146.901 1 61.37 ? C11 I5D 501 R 1 HETATM 12 C C12 I5D . . . E 5 122.854 124.602 145.951 1 63.74 ? C12 I5D 501 R 1 HETATM 13 C C14 I5D . . . E 5 121.585 123.79 143.827 1 67.8 ? C14 I5D 501 R 1 HETATM 14 C C16 I5D . . . E 5 123.819 127.76 146.768 1 60.04 ? C16 I5D 501 R 1 HETATM 15 C C18 I5D . . . E 5 124.217 128.733 151.551 1 55.64 ? C18 I5D 501 R 1 HETATM 16 C C19 I5D . . . E 5 124.103 127.238 151.767 1 58.47 ? C19 I5D 501 R 1 HETATM 17 C C2' I5D . . . E 5 124.109 130.655 150.224 1 64.61 ? C2' I5D 501 R 1 HETATM 18 C C3' I5D . . . E 5 123.978 129.303 150.343 1 58.19 ? C3' I5D 501 R 1 HETATM 19 C C4' I5D . . . E 5 123.602 128.416 149.143 1 59.54 ? C4' I5D 501 R 1 HETATM 20 C C5' I5D . . . E 5 122.598 127.272 149.285 1 68.91 ? C5' I5D 501 R 1 HETATM 21 C CAA I5D . . . E 5 123.866 131.388 148.905 1 68.05 ? CAA I5D 501 R 1 HETATM 22 N N2 I5D . . . E 5 123.69 131.94 147.93 1 69.49 ? N2 I5D 501 R 1 HETATM 23 N N9 I5D . . . E 5 124.701 130.835 152.523 1 67.93 ? N9 I5D 501 R 1 HETATM 24 N NAA I5D . . . E 5 124.815 128.833 153.913 1 69.42 ? NAA I5D 501 R 1 HETATM 25 O O6 I5D . . . E 5 127.162 132.609 153.343 1 70.07 ? O6 I5D 501 R 1 HETATM 26 O OP3 I5D . . . E 5 122.637 125.979 145.793 1 62.36 ? OP3 I5D 501 R 1 HETATM 27 S S1 I5D . . . E 5 124.633 133.229 151.145 1 77.8 ? S1 I5D 501 R 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #