data_7XZ5 # _model_server_result.job_id s-uddUYMeXonQUAuZkFQgw _model_server_result.datetime_utc '2025-09-01 19:21:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7XZ5 # _exptl.entry_id 7XZ5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 522.675 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,7R,18E)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XZ5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 N CYS 22 1_555 D SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 100 N CYS 99 1_555 D SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 E SG CYS 228 R CYS 78 1_555 E SG CYS 305 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 E SG CYS 401 R CYS 251 1_555 E SG CYS 404 R CYS 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C26 H53 N O7 P 1' _chem_comp.formula_weight 522.675 _chem_comp.id LSC _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,7R,18E)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 LSC sing 192 n n C1 H1 LSC sing 193 n n C1 H1A LSC sing 194 n n C1 H1B LSC sing 195 n n C3 C2 LSC sing 196 n n C2 H2 LSC sing 197 n n C2 H2A LSC sing 198 n n C4 C3 LSC sing 199 n n C3 H3 LSC sing 200 n n C3 H3A LSC sing 201 n n C5 C4 LSC sing 202 n n C4 H4 LSC sing 203 n n C4 H4A LSC sing 204 n n C6 C5 LSC sing 205 n n C5 H5 LSC sing 206 n n C5 H5A LSC sing 207 n n C7 C6 LSC sing 208 n n C6 H6 LSC sing 209 n n C6 H6A LSC sing 210 n n C8 C7 LSC sing 211 n n C7 H7 LSC sing 212 n n C7 H7A LSC sing 213 n n C9 C8 LSC sing 214 n n C8 H8 LSC sing 215 n n C8 H8A LSC sing 216 n n C10 C9 LSC doub 217 e n C9 H9 LSC sing 218 n n C11 C10 LSC sing 219 n n C10 H10 LSC sing 220 n n C11 C12 LSC sing 221 n n C11 H11 LSC sing 222 n n C11 H11A LSC sing 223 n n C13 C12 LSC sing 224 n n C12 H12 LSC sing 225 n n C12 H12A LSC sing 226 n n C14 C13 LSC sing 227 n n C13 H13 LSC sing 228 n n C13 H13A LSC sing 229 n n C15 C14 LSC sing 230 n n C14 H14 LSC sing 231 n n C14 H14A LSC sing 232 n n C16 C15 LSC sing 233 n n C15 H15 LSC sing 234 n n C15 H15A LSC sing 235 n n C17 C16 LSC sing 236 n n C16 H16 LSC sing 237 n n C16 H16A LSC sing 238 n n C18 C17 LSC sing 239 n n C17 H17 LSC sing 240 n n C17 H17A LSC sing 241 n n O19 C18 LSC sing 242 n n C18 O32 LSC doub 243 n n C20 O19 LSC sing 244 n n C21 C20 LSC sing 245 n n C20 H20 LSC sing 246 n n C20 H20A LSC sing 247 n n C22 C21 LSC sing 248 n n O33 C21 LSC sing 249 n n C21 H21 LSC sing 250 n n O23 C22 LSC sing 251 n n C22 H22 LSC sing 252 n n C22 H22A LSC sing 253 n n P24 O23 LSC sing 254 n n O35 P24 LSC sing 255 n n O34 P24 LSC doub 256 n n P24 O25 LSC sing 257 n n O25 HO25 LSC sing 258 n n C31 C30 LSC sing 259 n n C30 O35 LSC sing 260 n n C30 H30 LSC sing 261 n n C30 H30A LSC sing 262 n n N32 C31 LSC sing 263 n n C31 H31 LSC sing 264 n n C31 H31A LSC sing 265 n n C33 N32 LSC sing 266 n n C35 N32 LSC sing 267 n n N32 C34 LSC sing 268 n n C33 H33 LSC sing 269 n n C33 H33A LSC sing 270 n n C33 H33B LSC sing 271 n n O33 HO33 LSC sing 272 n n C34 H34 LSC sing 273 n n C34 H34A LSC sing 274 n n C34 H34B LSC sing 275 n n C35 H35 LSC sing 276 n n C35 H35A LSC sing 277 n n C35 H35B LSC sing 278 n n # _atom_sites.entry_id 7XZ5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id LSC _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id LSC _pdbx_nonpoly_scheme.auth_mon_id LSC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LSC . . . F 6 94.987 123.132 94.297 1 67.78 ? C1 LSC 401 R 1 HETATM 2 C C2 LSC . . . F 6 96.221 122.79 93.435 1 67.78 ? C2 LSC 401 R 1 HETATM 3 C C3 LSC . . . F 6 95.822 122.348 92.014 1 67.78 ? C3 LSC 401 R 1 HETATM 4 C C4 LSC . . . F 6 97.04 121.948 91.15 1 67.78 ? C4 LSC 401 R 1 HETATM 5 C C5 LSC . . . F 6 96.593 121.498 89.751 1 67.78 ? C5 LSC 401 R 1 HETATM 6 C C6 LSC . . . F 6 97.745 121.023 88.846 1 67.78 ? C6 LSC 401 R 1 HETATM 7 C C7 LSC . . . F 6 97.197 120.672 87.446 1 67.78 ? C7 LSC 401 R 1 HETATM 8 C C8 LSC . . . F 6 98.268 120.178 86.465 1 67.78 ? C8 LSC 401 R 1 HETATM 9 C C9 LSC . . . F 6 97.623 119.806 85.152 1 67.78 ? C9 LSC 401 R 1 HETATM 10 C C10 LSC . . . F 6 97.459 118.558 84.705 1 67.78 ? C10 LSC 401 R 1 HETATM 11 C C11 LSC . . . F 6 96.711 118.236 83.427 1 67.78 ? C11 LSC 401 R 1 HETATM 12 C C12 LSC . . . F 6 97.476 118.699 82.164 1 67.78 ? C12 LSC 401 R 1 HETATM 13 C C13 LSC . . . F 6 98.545 117.688 81.709 1 67.78 ? C13 LSC 401 R 1 HETATM 14 C C14 LSC . . . F 6 97.992 116.586 80.768 1 67.78 ? C14 LSC 401 R 1 HETATM 15 C C15 LSC . . . F 6 98.274 116.883 79.275 1 67.78 ? C15 LSC 401 R 1 HETATM 16 C C16 LSC . . . F 6 97.957 115.682 78.35 1 67.78 ? C16 LSC 401 R 1 HETATM 17 C C17 LSC . . . F 6 98.461 115.93 76.907 1 67.78 ? C17 LSC 401 R 1 HETATM 18 C C18 LSC . . . F 6 98.493 114.713 75.92 1 67.78 ? C18 LSC 401 R 1 HETATM 19 O O19 LSC . . . F 6 98.405 114.905 74.493 1 67.78 ? O19 LSC 401 R 1 HETATM 20 C C20 LSC . . . F 6 99.606 115.017 73.701 1 67.78 ? C20 LSC 401 R 1 HETATM 21 C C21 LSC . . . F 6 99.318 114.979 72.168 1 67.78 ? C21 LSC 401 R 1 HETATM 22 C C22 LSC . . . F 6 98.039 115.787 71.953 1 67.78 ? C22 LSC 401 R 1 HETATM 23 O O23 LSC . . . F 6 97.632 116.774 70.976 1 67.78 ? O23 LSC 401 R 1 HETATM 24 P P24 LSC . . . F 6 98.567 117.374 69.809 1 67.78 ? P24 LSC 401 R 1 HETATM 25 O O25 LSC . . . F 6 99.917 116.798 69.883 1 67.78 -1 O25 LSC 401 R 1 HETATM 26 C C30 LSC . . . F 6 97.265 119.656 70.068 1 67.78 ? C30 LSC 401 R 1 HETATM 27 C C31 LSC . . . F 6 96.36 119.574 71.337 1 67.78 ? C31 LSC 401 R 1 HETATM 28 N N32 LSC . . . F 6 94.825 119.597 71.11 1 67.78 ? N32 LSC 401 R 1 HETATM 29 O O32 LSC . . . F 6 98.583 113.611 76.352 1 67.78 ? O32 LSC 401 R 1 HETATM 30 C C33 LSC . . . F 6 94.7 120.324 69.833 1 67.78 ? C33 LSC 401 R 1 HETATM 31 O O33 LSC . . . F 6 99.091 113.662 71.792 1 67.78 ? O33 LSC 401 R 1 HETATM 32 C C34 LSC . . . F 6 94.343 118.268 70.707 1 67.78 ? C34 LSC 401 R 1 HETATM 33 O O34 LSC . . . F 6 97.997 117.166 68.461 1 67.78 ? O34 LSC 401 R 1 HETATM 34 C C35 LSC . . . F 6 93.949 120.455 71.862 1 67.78 ? C35 LSC 401 R 1 HETATM 35 O O35 LSC . . . F 6 98.493 118.926 70.251 1 67.78 ? O35 LSC 401 R 1 HETATM 36 H H1 LSC . . . F 6 94.468 122.214 94.568 1 67.78 ? H1 LSC 401 R 1 HETATM 37 H H1A LSC . . . F 6 94.315 123.776 93.731 1 67.78 ? H1A LSC 401 R 1 HETATM 38 H H1B LSC . . . F 6 95.307 123.647 95.2 1 67.78 ? H1B LSC 401 R 1 HETATM 39 H H2 LSC . . . F 6 96.776 121.984 93.915 1 67.78 ? H2 LSC 401 R 1 HETATM 40 H H2A LSC . . . F 6 96.861 123.67 93.366 1 67.78 ? H2A LSC 401 R 1 HETATM 41 H H3 LSC . . . F 6 95.298 123.169 91.525 1 67.78 ? H3 LSC 401 R 1 HETATM 42 H H3A LSC . . . F 6 95.148 121.496 92.088 1 67.78 ? H3A LSC 401 R 1 HETATM 43 H H4 LSC . . . F 6 97.572 121.13 91.637 1 67.78 ? H4 LSC 401 R 1 HETATM 44 H H4A LSC . . . F 6 97.708 122.804 91.055 1 67.78 ? H4A LSC 401 R 1 HETATM 45 H H5 LSC . . . F 6 96.333 122.391 89.314 1 67.78 ? H5 LSC 401 R 1 HETATM 46 H H5A LSC . . . F 6 95.761 120.795 89.78 1 67.78 ? H5A LSC 401 R 1 HETATM 47 H H6 LSC . . . F 6 98.21 120.14 89.285 1 67.78 ? H6 LSC 401 R 1 HETATM 48 H H6A LSC . . . F 6 98.486 121.817 88.756 1 67.78 ? H6A LSC 401 R 1 HETATM 49 H H7 LSC . . . F 6 96.725 121.559 87.026 1 67.78 ? H7 LSC 401 R 1 HETATM 50 H H7A LSC . . . F 6 96.441 119.893 87.554 1 67.78 ? H7A LSC 401 R 1 HETATM 51 H H8 LSC . . . F 6 98.767 119.305 86.883 1 67.78 ? H8 LSC 401 R 1 HETATM 52 H H8A LSC . . . F 6 99 120.97 86.298 1 67.78 ? H8A LSC 401 R 1 HETATM 53 H H9 LSC . . . F 6 97.934 119.13 85.943 1 67.78 ? H9 LSC 401 R 1 HETATM 54 H H10 LSC . . . F 6 97.495 117.657 85.304 1 67.78 ? H10 LSC 401 R 1 HETATM 55 H H11 LSC . . . F 6 95.74 118.731 83.453 1 67.78 ? H11 LSC 401 R 1 HETATM 56 H H11A LSC . . . F 6 96.557 117.158 83.371 1 67.78 ? H11A LSC 401 R 1 HETATM 57 H H12 LSC . . . F 6 97.962 119.652 82.377 1 67.78 ? H12 LSC 401 R 1 HETATM 58 H H12A LSC . . . F 6 96.762 118.842 81.354 1 67.78 ? H12A LSC 401 R 1 HETATM 59 H H13 LSC . . . F 6 98.972 117.211 82.592 1 67.78 ? H13 LSC 401 R 1 HETATM 60 H H13A LSC . . . F 6 99.334 118.227 81.188 1 67.78 ? H13A LSC 401 R 1 HETATM 61 H H14 LSC . . . F 6 96.914 116.508 80.914 1 67.78 ? H14 LSC 401 R 1 HETATM 62 H H14A LSC . . . F 6 98.452 115.635 81.03 1 67.78 ? H14A LSC 401 R 1 HETATM 63 H H15 LSC . . . F 6 99.327 117.145 79.162 1 67.78 ? H15 LSC 401 R 1 HETATM 64 H H15A LSC . . . F 6 97.666 117.732 78.966 1 67.78 ? H15A LSC 401 R 1 HETATM 65 H H16 LSC . . . F 6 96.88 115.524 78.329 1 67.78 ? H16 LSC 401 R 1 HETATM 66 H H16A LSC . . . F 6 98.44 114.788 78.748 1 67.78 ? H16A LSC 401 R 1 HETATM 67 H H17 LSC . . . F 6 99.481 116.302 76.969 1 67.78 ? H17 LSC 401 R 1 HETATM 68 H H17A LSC . . . F 6 97.799 116.663 76.449 1 67.78 ? H17A LSC 401 R 1 HETATM 69 H H20 LSC . . . F 6 100.282 114.202 73.959 1 67.78 ? H20 LSC 401 R 1 HETATM 70 H H20A LSC . . . F 6 100.08 115.966 73.95 1 67.78 ? H20A LSC 401 R 1 HETATM 71 H H21 LSC . . . F 6 100.137 115.354 71.58 1 67.78 ? H21 LSC 401 R 1 HETATM 72 H H22 LSC . . . F 6 97.263 115.026 71.889 1 67.78 ? H22 LSC 401 R 1 HETATM 73 H H22A LSC . . . F 6 97.886 116.289 72.909 1 67.78 ? H22A LSC 401 R 1 HETATM 74 H H30 LSC . . . F 6 97.491 120.699 69.851 1 67.78 ? H30 LSC 401 R 1 HETATM 75 H H30A LSC . . . F 6 96.765 119.208 69.212 1 67.78 ? H30A LSC 401 R 1 HETATM 76 H H31 LSC . . . F 6 96.615 120.413 71.984 1 67.78 ? H31 LSC 401 R 1 HETATM 77 H H31A LSC . . . F 6 96.607 118.653 71.865 1 67.78 ? H31A LSC 401 R 1 HETATM 78 H H33 LSC . . . F 6 95.292 121.238 69.876 1 67.78 ? H33 LSC 401 R 1 HETATM 79 H H33A LSC . . . F 6 93.655 120.575 69.659 1 67.78 ? H33A LSC 401 R 1 HETATM 80 H H33B LSC . . . F 6 95.062 119.694 69.02 1 67.78 ? H33B LSC 401 R 1 HETATM 81 H HO33 LSC . . . F 6 99.875 113.152 71.935 1 67.78 ? HO33 LSC 401 R 1 HETATM 82 H H34 LSC . . . F 6 94.928 117.909 69.862 1 67.78 ? H34 LSC 401 R 1 HETATM 83 H H34A LSC . . . F 6 93.294 118.333 70.419 1 67.78 ? H34A LSC 401 R 1 HETATM 84 H H34B LSC . . . F 6 94.448 117.575 71.539 1 67.78 ? H34B LSC 401 R 1 HETATM 85 H H35 LSC . . . F 6 93.882 119.972 72.783 1 67.78 ? H35 LSC 401 R 1 HETATM 86 H H35A LSC . . . F 6 92.971 120.515 71.388 1 67.78 ? H35A LSC 401 R 1 HETATM 87 H H35B LSC . . . F 6 94.385 121.446 71.977 1 67.78 ? H35B LSC 401 R 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 87 #