data_7XZO
#
_model_server_result.job_id            5P2-Z7Sd5954WhiX-r2p7w 
_model_server_result.datetime_utc      '2024-10-15 02:13:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xzo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":603}' 
#
_entry.id    7XZO 
#
_exptl.entry_id    7XZO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.15 
_cell.angle_gamma         90 
_cell.entry_id            7XZO 
_cell.length_a            215.28 
_cell.length_b            115.1 
_cell.length_c            106.53 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XZO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,N,O,R,T 1 1 
B,D,G,H,I,J,K,L,M,P,Q,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 100 A GLU 96 1_555 E K K . A K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? 
metalc ? metalc2 A O PRO 101 A PRO 97 1_555 E K K . A K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc3 A O ILE 127 A ILE 123 1_555 E K K . A K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? 
metalc ? metalc4 A O LEU 129 A LEU 125 1_555 E K K . A K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc5 E K K . A K 601 1_555 R O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc6 B OE2 GLU 100 B GLU 96 1_555 G K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc7 B O PRO 101 B PRO 97 1_555 G K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc8 B O ILE 127 B ILE 123 1_555 G K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
metalc ? metalc9 B O LEU 129 B LEU 125 1_555 G K K . B K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc10 C OE2 GLU 100 C GLU 96 1_555 N K K . C K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? 
metalc ? metalc11 C O PRO 101 C PRO 97 1_555 N K K . C K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc12 C O ILE 127 C ILE 123 1_555 N K K . C K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc13 C O LEU 129 C LEU 125 1_555 N K K . C K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc14 D OE2 GLU 100 D GLU 96 1_555 P K K . D K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? 
metalc ? metalc15 D O PRO 101 D PRO 97 1_555 P K K . D K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc16 D O ILE 127 D ILE 123 1_555 P K K . D K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc17 D O LEU 129 D LEU 125 1_555 P K K . D K 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 119 n n 
O6 HO6 BU3 sing 120 n n 
C3 C4 BU3 sing 121 n n 
C3 C2 BU3 sing 122 n n 
C3 H3 BU3 sing 123 n n 
C4 H41 BU3 sing 124 n n 
C4 H42 BU3 sing 125 n n 
C4 H43 BU3 sing 126 n n 
C2 O5 BU3 sing 127 n n 
C2 C1 BU3 sing 128 n n 
C2 H2 BU3 sing 129 n n 
O5 HO5 BU3 sing 130 n n 
C1 H11 BU3 sing 131 n n 
C1 H12 BU3 sing 132 n n 
C1 H13 BU3 sing 133 n n 
#
_atom_sites.entry_id                     7XZO 
_atom_sites.fract_transf_matrix[1][1]    0.004645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000256 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008688 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 K A 1 601 3 K K . 
F 3 ATP A 1 602 1 ATP ATP . 
G 2 K B 1 601 1 K K . 
H 3 ATP B 1 602 2 ATP ATP . 
I 4 BU3 B 1 603 2 BU3 BU3 . 
J 4 BU3 B 1 604 3 BU3 BU3 . 
K 4 BU3 B 1 605 4 BU3 BU3 . 
L 4 BU3 B 1 606 5 BU3 BU3 . 
M 4 BU3 B 1 607 6 BU3 BU3 . 
N 2 K C 1 601 4 K K . 
O 3 ATP C 1 602 4 ATP ATP . 
P 2 K D 1 601 2 K K . 
Q 3 ATP D 1 602 3 ATP ATP . 
R 5 HOH A 1 701 26 HOH HOH . 
R 5 HOH A 2 702 55 HOH HOH . 
R 5 HOH A 3 703 34 HOH HOH . 
R 5 HOH A 4 704 33 HOH HOH . 
R 5 HOH A 5 705 43 HOH HOH . 
R 5 HOH A 6 706 16 HOH HOH . 
R 5 HOH A 7 707 56 HOH HOH . 
R 5 HOH A 8 708 14 HOH HOH . 
R 5 HOH A 9 709 66 HOH HOH . 
R 5 HOH A 10 710 62 HOH HOH . 
R 5 HOH A 11 711 31 HOH HOH . 
R 5 HOH A 12 712 7 HOH HOH . 
R 5 HOH A 13 713 40 HOH HOH . 
R 5 HOH A 14 714 24 HOH HOH . 
R 5 HOH A 15 715 69 HOH HOH . 
R 5 HOH A 16 716 63 HOH HOH . 
R 5 HOH A 17 717 1 HOH HOH . 
R 5 HOH A 18 718 65 HOH HOH . 
R 5 HOH A 19 719 48 HOH HOH . 
R 5 HOH A 20 720 35 HOH HOH . 
R 5 HOH A 21 721 68 HOH HOH . 
S 5 HOH B 1 701 72 HOH HOH . 
S 5 HOH B 2 702 27 HOH HOH . 
S 5 HOH B 3 703 42 HOH HOH . 
S 5 HOH B 4 704 32 HOH HOH . 
S 5 HOH B 5 705 59 HOH HOH . 
S 5 HOH B 6 706 47 HOH HOH . 
S 5 HOH B 7 707 17 HOH HOH . 
S 5 HOH B 8 708 67 HOH HOH . 
S 5 HOH B 9 709 50 HOH HOH . 
S 5 HOH B 10 710 46 HOH HOH . 
S 5 HOH B 11 711 44 HOH HOH . 
S 5 HOH B 12 712 6 HOH HOH . 
S 5 HOH B 13 713 22 HOH HOH . 
S 5 HOH B 14 714 2 HOH HOH . 
S 5 HOH B 15 715 29 HOH HOH . 
S 5 HOH B 16 716 19 HOH HOH . 
S 5 HOH B 17 717 18 HOH HOH . 
S 5 HOH B 18 718 74 HOH HOH . 
S 5 HOH B 19 719 75 HOH HOH . 
S 5 HOH B 20 720 76 HOH HOH . 
S 5 HOH B 21 721 73 HOH HOH . 
S 5 HOH B 22 722 20 HOH HOH . 
S 5 HOH B 23 723 30 HOH HOH . 
S 5 HOH B 24 724 37 HOH HOH . 
T 5 HOH C 1 701 51 HOH HOH . 
T 5 HOH C 2 702 57 HOH HOH . 
T 5 HOH C 3 703 4 HOH HOH . 
T 5 HOH C 4 704 41 HOH HOH . 
T 5 HOH C 5 705 9 HOH HOH . 
T 5 HOH C 6 706 61 HOH HOH . 
T 5 HOH C 7 707 21 HOH HOH . 
T 5 HOH C 8 708 8 HOH HOH . 
T 5 HOH C 9 709 15 HOH HOH . 
T 5 HOH C 10 710 28 HOH HOH . 
T 5 HOH C 11 711 64 HOH HOH . 
T 5 HOH C 12 712 54 HOH HOH . 
T 5 HOH C 13 713 58 HOH HOH . 
T 5 HOH C 14 714 38 HOH HOH . 
T 5 HOH C 15 715 70 HOH HOH . 
T 5 HOH C 16 716 39 HOH HOH . 
U 5 HOH D 1 701 77 HOH HOH . 
U 5 HOH D 2 702 11 HOH HOH . 
U 5 HOH D 3 703 3 HOH HOH . 
U 5 HOH D 4 704 49 HOH HOH . 
U 5 HOH D 5 705 71 HOH HOH . 
U 5 HOH D 6 706 10 HOH HOH . 
U 5 HOH D 7 707 5 HOH HOH . 
U 5 HOH D 8 708 45 HOH HOH . 
U 5 HOH D 9 709 25 HOH HOH . 
U 5 HOH D 10 710 52 HOH HOH . 
U 5 HOH D 11 711 36 HOH HOH . 
U 5 HOH D 12 712 13 HOH HOH . 
U 5 HOH D 13 713 12 HOH HOH . 
U 5 HOH D 14 714 60 HOH HOH . 
U 5 HOH D 15 715 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . I 4 33.377 33.046 54.629 1 56.11 ? O6 BU3 603 B 1 
HETATM 2 C C3 BU3 . . . I 4 34.27 34.029 54.091 1 50.34 ? C3 BU3 603 B 1 
HETATM 3 C C4 BU3 . . . I 4 33.487 34.966 53.178 1 40.55 ? C4 BU3 603 B 1 
HETATM 4 C C2 BU3 . . . I 4 35.392 33.335 53.329 1 50.84 ? C2 BU3 603 B 1 
HETATM 5 O O5 BU3 . . . I 4 35.39 31.937 53.641 1 61.57 ? O5 BU3 603 B 1 
HETATM 6 C C1 BU3 . . . I 4 36.75 33.929 53.688 1 50.68 ? C1 BU3 603 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#