data_7XZP
#
_model_server_result.job_id            f66KlpKmj3sM9zl32kcLcA 
_model_server_result.datetime_utc      '2024-10-15 00:24:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    7XZP 
#
_exptl.entry_id    7XZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              336.361 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BERBERINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7XZP 
_cell.length_a            136.26 
_cell.length_b            205.21 
_cell.length_c            107.61 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C20 H18 N O4 1' 
_chem_comp.formula_weight    336.361 
_chem_comp.id                BER 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BERBERINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BER sing 70 n y 
C1 N1 BER doub 71 n y 
C1 C3 BER sing 72 n y 
C2 C4 BER doub 73 n y 
C2 C5 BER sing 74 n y 
N1 C6 BER sing 75 n y 
N1 C7 BER sing 76 n n 
C3 C8 BER doub 77 n y 
C3 H31 BER sing 78 n n 
C4 C9 BER sing 79 n y 
C4 C10 BER sing 80 n n 
C5 C11 BER doub 81 n y 
C5 H51 BER sing 82 n n 
C6 C12 BER doub 83 n y 
C6 H61 BER sing 84 n n 
C7 C10 BER sing 85 n n 
C7 H71 BER sing 86 n n 
C7 H72 BER sing 87 n n 
C8 C12 BER sing 88 n y 
C8 C13 BER sing 89 n y 
C9 C14 BER doub 90 n y 
C9 H91 BER sing 91 n n 
C10 H101 BER sing 92 n n 
C10 H102 BER sing 93 n n 
C11 C14 BER sing 94 n y 
C11 O1 BER sing 95 n n 
C12 C15 BER sing 96 n y 
C13 C16 BER doub 97 n y 
C13 H131 BER sing 98 n n 
C14 O2 BER sing 99 n n 
O1 C17 BER sing 100 n n 
C15 C18 BER doub 101 n y 
C15 O3 BER sing 102 n n 
C16 C18 BER sing 103 n y 
C16 H161 BER sing 104 n n 
O2 C17 BER sing 105 n n 
C17 H171 BER sing 106 n n 
C17 H172 BER sing 107 n n 
C18 O4 BER sing 108 n n 
O3 C19 BER sing 109 n n 
O4 C20 BER sing 110 n n 
C19 H191 BER sing 111 n n 
C19 H192 BER sing 112 n n 
C19 H193 BER sing 113 n n 
C20 H201 BER sing 114 n n 
C20 H202 BER sing 115 n n 
C20 H203 BER sing 116 n n 
#
_atom_sites.entry_id                     7XZP 
_atom_sites.fract_transf_matrix[1][1]    0.007339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BER A 1 601 4 BER BER . 
D 2 BER A 1 602 7 BER BER . 
E 3 SO4 A 1 603 2 SO4 SO4 . 
F 4 PRO A 1 604 3 PRO PRO . 
G 4 PRO A 1 605 5 PRO PRO . 
H 4 PRO A 1 606 6 PRO PRO . 
I 4 PRO A 1 607 8 PRO PRO . 
J 4 PRO A 1 608 10 PRO PRO . 
K 2 BER B 1 601 3 BER BER . 
L 2 BER B 1 602 6 BER BER . 
M 3 SO4 B 1 603 1 SO4 SO4 . 
N 4 PRO B 1 604 1 PRO PRO . 
O 4 PRO B 1 605 2 PRO PRO . 
P 4 PRO B 1 606 4 PRO PRO . 
Q 4 PRO B 1 607 7 PRO PRO . 
R 5 HOH A 1 701 15 HOH HOH . 
R 5 HOH A 2 702 42 HOH HOH . 
R 5 HOH A 3 703 36 HOH HOH . 
R 5 HOH A 4 704 40 HOH HOH . 
R 5 HOH A 5 705 28 HOH HOH . 
R 5 HOH A 6 706 13 HOH HOH . 
R 5 HOH A 7 707 6 HOH HOH . 
R 5 HOH A 8 708 14 HOH HOH . 
R 5 HOH A 9 709 43 HOH HOH . 
R 5 HOH A 10 710 19 HOH HOH . 
R 5 HOH A 11 711 10 HOH HOH . 
R 5 HOH A 12 712 9 HOH HOH . 
R 5 HOH A 13 713 18 HOH HOH . 
R 5 HOH A 14 714 49 HOH HOH . 
R 5 HOH A 15 715 39 HOH HOH . 
R 5 HOH A 16 716 2 HOH HOH . 
R 5 HOH A 17 717 8 HOH HOH . 
R 5 HOH A 18 718 11 HOH HOH . 
R 5 HOH A 19 719 32 HOH HOH . 
R 5 HOH A 20 720 16 HOH HOH . 
R 5 HOH A 21 721 29 HOH HOH . 
R 5 HOH A 22 722 7 HOH HOH . 
R 5 HOH A 23 723 34 HOH HOH . 
R 5 HOH A 24 724 25 HOH HOH . 
R 5 HOH A 25 725 46 HOH HOH . 
S 5 HOH B 1 701 48 HOH HOH . 
S 5 HOH B 2 702 31 HOH HOH . 
S 5 HOH B 3 703 44 HOH HOH . 
S 5 HOH B 4 704 24 HOH HOH . 
S 5 HOH B 5 705 55 HOH HOH . 
S 5 HOH B 6 706 22 HOH HOH . 
S 5 HOH B 7 707 52 HOH HOH . 
S 5 HOH B 8 708 3 HOH HOH . 
S 5 HOH B 9 709 12 HOH HOH . 
S 5 HOH B 10 710 33 HOH HOH . 
S 5 HOH B 11 711 54 HOH HOH . 
S 5 HOH B 12 712 4 HOH HOH . 
S 5 HOH B 13 713 51 HOH HOH . 
S 5 HOH B 14 714 1 HOH HOH . 
S 5 HOH B 15 715 23 HOH HOH . 
S 5 HOH B 16 716 26 HOH HOH . 
S 5 HOH B 17 717 41 HOH HOH . 
S 5 HOH B 18 718 17 HOH HOH . 
S 5 HOH B 19 719 53 HOH HOH . 
S 5 HOH B 20 720 50 HOH HOH . 
S 5 HOH B 21 721 35 HOH HOH . 
S 5 HOH B 22 722 37 HOH HOH . 
S 5 HOH B 23 723 20 HOH HOH . 
S 5 HOH B 24 724 47 HOH HOH . 
S 5 HOH B 25 725 5 HOH HOH . 
S 5 HOH B 26 726 38 HOH HOH . 
S 5 HOH B 27 727 21 HOH HOH . 
S 5 HOH B 28 728 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BER . . . D 2 70.878 54.325 -7.94 0.8 55 ? C1 BER 602 A 1 
HETATM 2 C C2 BER . . . D 2 70.98 53.306 -9.009 0.8 56.08 ? C2 BER 602 A 1 
HETATM 3 N N1 BER . . . D 2 71.6 54.133 -6.813 0.8 57.09 ? N1 BER 602 A 1 
HETATM 4 C C3 BER . . . D 2 70.121 55.476 -8.154 0.8 52.89 ? C3 BER 602 A 1 
HETATM 5 C C4 BER . . . D 2 71.432 51.941 -8.64 0.8 56.11 ? C4 BER 602 A 1 
HETATM 6 C C5 BER . . . D 2 70.75 53.658 -10.34 0.8 63.46 ? C5 BER 602 A 1 
HETATM 7 C C6 BER . . . D 2 71.6 55.033 -5.819 0.8 56.12 ? C6 BER 602 A 1 
HETATM 8 C C7 BER . . . D 2 72.406 52.913 -6.633 0.8 50.84 ? C7 BER 602 A 1 
HETATM 9 C C8 BER . . . D 2 70.076 56.442 -7.16 0.8 51.87 ? C8 BER 602 A 1 
HETATM 10 C C9 BER . . . D 2 71.593 50.95 -9.608 0.8 60.07 ? C9 BER 602 A 1 
HETATM 11 C C10 BER . . . D 2 71.686 51.682 -7.18 0.8 52.99 ? C10 BER 602 A 1 
HETATM 12 C C11 BER . . . D 2 70.928 52.662 -11.291 0.8 66.73 ? C11 BER 602 A 1 
HETATM 13 C C12 BER . . . D 2 70.86 56.2 -5.932 0.8 50.93 ? C12 BER 602 A 1 
HETATM 14 C C13 BER . . . D 2 69.329 57.608 -7.294 0.8 51.66 ? C13 BER 602 A 1 
HETATM 15 C C14 BER . . . D 2 71.346 51.314 -10.927 0.8 64.62 ? C14 BER 602 A 1 
HETATM 16 O O1 BER . . . D 2 70.761 52.698 -12.649 0.8 66.55 ? O1 BER 602 A 1 
HETATM 17 C C15 BER . . . D 2 70.829 57.22 -4.86 0.8 54.78 ? C15 BER 602 A 1 
HETATM 18 C C16 BER . . . D 2 69.298 58.572 -6.286 0.8 53.67 ? C16 BER 602 A 1 
HETATM 19 O O2 BER . . . D 2 71.419 50.574 -12.077 0.8 65.35 ? O2 BER 602 A 1 
HETATM 20 C C17 BER . . . D 2 71.002 51.385 -13.196 0.8 58.9 ? C17 BER 602 A 1 
HETATM 21 C C18 BER . . . D 2 70.007 58.431 -5.094 0.8 57.39 ? C18 BER 602 A 1 
HETATM 22 O O3 BER . . . D 2 71.532 57.048 -3.696 0.8 60.16 ? O3 BER 602 A 1 
HETATM 23 O O4 BER . . . D 2 69.949 59.396 -4.122 0.8 64.13 ? O4 BER 602 A 1 
HETATM 24 C C19 BER . . . D 2 72.853 57.57 -3.558 0.8 55.48 ? C19 BER 602 A 1 
HETATM 25 C C20 BER . . . D 2 69.852 60.775 -4.468 0.8 58.03 ? C20 BER 602 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           635 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#