data_7XZP # _model_server_result.job_id dn_vdkR_qRLtWNYMZUw-EA _model_server_result.datetime_utc '2024-11-24 06:35:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xzp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":606}' # _entry.id 7XZP # _exptl.entry_id 7XZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 115.13 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROLINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XZP _cell.length_a 136.26 _cell.length_b 205.21 _cell.length_c 107.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id PRO _chem_comp.mon_nstd_flag y _chem_comp.name PROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PRO sing 307 n n N CD PRO sing 308 n n N H PRO sing 309 n n CA C PRO sing 310 n n CA CB PRO sing 311 n n CA HA PRO sing 312 n n C O PRO doub 313 n n C OXT PRO sing 314 n n CB CG PRO sing 315 n n CB HB2 PRO sing 316 n n CB HB3 PRO sing 317 n n CG CD PRO sing 318 n n CG HG2 PRO sing 319 n n CG HG3 PRO sing 320 n n CD HD2 PRO sing 321 n n CD HD3 PRO sing 322 n n OXT HXT PRO sing 323 n n # _atom_sites.entry_id 7XZP _atom_sites.fract_transf_matrix[1][1] 0.007339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BER A 1 601 4 BER BER . D 2 BER A 1 602 7 BER BER . E 3 SO4 A 1 603 2 SO4 SO4 . F 4 PRO A 1 604 3 PRO PRO . G 4 PRO A 1 605 5 PRO PRO . H 4 PRO A 1 606 6 PRO PRO . I 4 PRO A 1 607 8 PRO PRO . J 4 PRO A 1 608 10 PRO PRO . K 2 BER B 1 601 3 BER BER . L 2 BER B 1 602 6 BER BER . M 3 SO4 B 1 603 1 SO4 SO4 . N 4 PRO B 1 604 1 PRO PRO . O 4 PRO B 1 605 2 PRO PRO . P 4 PRO B 1 606 4 PRO PRO . Q 4 PRO B 1 607 7 PRO PRO . R 5 HOH A 1 701 15 HOH HOH . R 5 HOH A 2 702 42 HOH HOH . R 5 HOH A 3 703 36 HOH HOH . R 5 HOH A 4 704 40 HOH HOH . R 5 HOH A 5 705 28 HOH HOH . R 5 HOH A 6 706 13 HOH HOH . R 5 HOH A 7 707 6 HOH HOH . R 5 HOH A 8 708 14 HOH HOH . R 5 HOH A 9 709 43 HOH HOH . R 5 HOH A 10 710 19 HOH HOH . R 5 HOH A 11 711 10 HOH HOH . R 5 HOH A 12 712 9 HOH HOH . R 5 HOH A 13 713 18 HOH HOH . R 5 HOH A 14 714 49 HOH HOH . R 5 HOH A 15 715 39 HOH HOH . R 5 HOH A 16 716 2 HOH HOH . R 5 HOH A 17 717 8 HOH HOH . R 5 HOH A 18 718 11 HOH HOH . R 5 HOH A 19 719 32 HOH HOH . R 5 HOH A 20 720 16 HOH HOH . R 5 HOH A 21 721 29 HOH HOH . R 5 HOH A 22 722 7 HOH HOH . R 5 HOH A 23 723 34 HOH HOH . R 5 HOH A 24 724 25 HOH HOH . R 5 HOH A 25 725 46 HOH HOH . S 5 HOH B 1 701 48 HOH HOH . S 5 HOH B 2 702 31 HOH HOH . S 5 HOH B 3 703 44 HOH HOH . S 5 HOH B 4 704 24 HOH HOH . S 5 HOH B 5 705 55 HOH HOH . S 5 HOH B 6 706 22 HOH HOH . S 5 HOH B 7 707 52 HOH HOH . S 5 HOH B 8 708 3 HOH HOH . S 5 HOH B 9 709 12 HOH HOH . S 5 HOH B 10 710 33 HOH HOH . S 5 HOH B 11 711 54 HOH HOH . S 5 HOH B 12 712 4 HOH HOH . S 5 HOH B 13 713 51 HOH HOH . S 5 HOH B 14 714 1 HOH HOH . S 5 HOH B 15 715 23 HOH HOH . S 5 HOH B 16 716 26 HOH HOH . S 5 HOH B 17 717 41 HOH HOH . S 5 HOH B 18 718 17 HOH HOH . S 5 HOH B 19 719 53 HOH HOH . S 5 HOH B 20 720 50 HOH HOH . S 5 HOH B 21 721 35 HOH HOH . S 5 HOH B 22 722 37 HOH HOH . S 5 HOH B 23 723 20 HOH HOH . S 5 HOH B 24 724 47 HOH HOH . S 5 HOH B 25 725 5 HOH HOH . S 5 HOH B 26 726 38 HOH HOH . S 5 HOH B 27 727 21 HOH HOH . S 5 HOH B 28 728 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PRO . . . P 4 33.863 87.5 -35.072 1 62.25 ? N PRO 606 B 1 HETATM 2 C CA PRO . . . P 4 33.989 87.695 -36.522 1 63.99 ? CA PRO 606 B 1 HETATM 3 C C PRO . . . P 4 35.166 88.597 -36.901 1 67.14 ? C PRO 606 B 1 HETATM 4 O O PRO . . . P 4 35.742 88.466 -37.985 1 65.47 ? O PRO 606 B 1 HETATM 5 C CB PRO . . . P 4 32.654 88.339 -36.897 1 59.74 ? CB PRO 606 B 1 HETATM 6 C CG PRO . . . P 4 31.693 87.756 -35.917 1 61.96 ? CG PRO 606 B 1 HETATM 7 C CD PRO . . . P 4 32.464 87.601 -34.623 1 60.5 ? CD PRO 606 B 1 HETATM 8 O OXT PRO . . . P 4 35.578 89.47 -36.134 1 66.89 ? OXT PRO 606 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #