data_7Y0F
#
_model_server_result.job_id            eUtBNIJx83wckjCMwg3nHA 
_model_server_result.datetime_utc      '2024-11-06 20:49:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y0f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    7Y0F 
#
_exptl.entry_id    7Y0F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.44 
_cell.angle_gamma         90 
_cell.entry_id            7Y0F 
_cell.length_a            48.045 
_cell.length_b            91.208 
_cell.length_c            90.696 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y0F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 120 1_555 A SG CYS 31 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 25 A CYS 133 1_555 A SG CYS 40 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
disulf ? disulf3 A SG CYS 64 A CYS 172 1_555 A SG CYS 123 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 A SG CYS 77 A CYS 185 1_555 A SG CYS 133 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 136 A CYS 244 1_555 B SG CYS 110 C CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 26 C CYS 281 1_555 B SG CYS 42 C CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf7 B SG CYS 155 C CYS 410 1_555 B SG CYS 171 C CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf8 B SG CYS 182 C CYS 437 1_555 B SG CYS 210 C CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 C SG CYS 5 B CYS 113 1_555 C SG CYS 18 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf10 C SG CYS 12 B CYS 120 1_555 C SG CYS 31 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 C SG CYS 25 B CYS 133 1_555 C SG CYS 40 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf12 C SG CYS 64 B CYS 172 1_555 C SG CYS 123 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf13 C SG CYS 77 B CYS 185 1_555 C SG CYS 133 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf14 C SG CYS 136 B CYS 244 1_555 D SG CYS 110 D CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 D SG CYS 26 D CYS 281 1_555 D SG CYS 42 D CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
disulf ? disulf16 D SG CYS 155 D CYS 410 1_555 D SG CYS 171 D CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 D SG CYS 182 D CYS 437 1_555 D SG CYS 210 D CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 105 A ASN 213 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale2 C ND2 ASN 105 B ASN 213 1_555 H C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
metalc ? metalc1 A O ASN 23 A ASN 131 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc2 A OD1 ASP 26 A ASP 134 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc3 A O VAL 28 A VAL 136 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc4 A OD2 ASP 36 A ASP 144 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 A OE2 GLU 37 A GLU 145 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc6 C O ASN 23 B ASN 131 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc7 C OD1 ASP 26 B ASP 134 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc8 C O VAL 28 B VAL 136 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 C OD2 ASP 36 B ASP 144 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc10 C OE2 GLU 37 B GLU 145 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 279 n n 
C1 O1 NAG sing 280 n n 
C1 O5 NAG sing 281 n n 
C1 H1 NAG sing 282 n n 
C2 C3 NAG sing 283 n n 
C2 N2 NAG sing 284 n n 
C2 H2 NAG sing 285 n n 
C3 C4 NAG sing 286 n n 
C3 O3 NAG sing 287 n n 
C3 H3 NAG sing 288 n n 
C4 C5 NAG sing 289 n n 
C4 O4 NAG sing 290 n n 
C4 H4 NAG sing 291 n n 
C5 C6 NAG sing 292 n n 
C5 O5 NAG sing 293 n n 
C5 H5 NAG sing 294 n n 
C6 O6 NAG sing 295 n n 
C6 H61 NAG sing 296 n n 
C6 H62 NAG sing 297 n n 
C7 C8 NAG sing 298 n n 
C7 N2 NAG sing 299 n n 
C7 O7 NAG doub 300 n n 
C8 H81 NAG sing 301 n n 
C8 H82 NAG sing 302 n n 
C8 H83 NAG sing 303 n n 
N2 HN2 NAG sing 304 n n 
O1 HO1 NAG sing 305 n n 
O3 HO3 NAG sing 306 n n 
O4 HO4 NAG sing 307 n n 
O6 HO6 NAG sing 308 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7Y0F 
_atom_sites.fract_transf_matrix[1][1]    0.020814 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003835 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 601 601 NAG NAG . 
F 4 CA A 1 602 602 CA CA . 
G 5 I9V C 1 601 603 I9V I9V . 
H 3 NAG B 1 601 601 NAG NAG . 
I 4 CA B 1 602 602 CA CA . 
J 5 I9V D 1 601 603 I9V I9V . 
K 6 HOH A 1 701 707 HOH HOH . 
K 6 HOH A 2 702 711 HOH HOH . 
K 6 HOH A 3 703 714 HOH HOH . 
K 6 HOH A 4 704 715 HOH HOH . 
K 6 HOH A 5 705 716 HOH HOH . 
K 6 HOH A 6 706 721 HOH HOH . 
K 6 HOH A 7 707 724 HOH HOH . 
K 6 HOH A 8 708 731 HOH HOH . 
K 6 HOH A 9 709 736 HOH HOH . 
K 6 HOH A 10 710 738 HOH HOH . 
K 6 HOH A 11 711 739 HOH HOH . 
K 6 HOH A 12 712 745 HOH HOH . 
L 6 HOH C 1 701 701 HOH HOH . 
L 6 HOH C 2 702 702 HOH HOH . 
L 6 HOH C 3 703 703 HOH HOH . 
L 6 HOH C 4 704 704 HOH HOH . 
L 6 HOH C 5 705 705 HOH HOH . 
L 6 HOH C 6 706 706 HOH HOH . 
L 6 HOH C 7 707 708 HOH HOH . 
L 6 HOH C 8 708 709 HOH HOH . 
L 6 HOH C 9 709 710 HOH HOH . 
L 6 HOH C 10 710 712 HOH HOH . 
L 6 HOH C 11 711 713 HOH HOH . 
L 6 HOH C 12 712 717 HOH HOH . 
L 6 HOH C 13 713 718 HOH HOH . 
L 6 HOH C 14 714 719 HOH HOH . 
L 6 HOH C 15 715 720 HOH HOH . 
L 6 HOH C 16 716 722 HOH HOH . 
L 6 HOH C 17 717 723 HOH HOH . 
L 6 HOH C 18 718 725 HOH HOH . 
L 6 HOH C 19 719 726 HOH HOH . 
L 6 HOH C 20 720 727 HOH HOH . 
L 6 HOH C 21 721 728 HOH HOH . 
L 6 HOH C 22 722 729 HOH HOH . 
L 6 HOH C 23 723 730 HOH HOH . 
L 6 HOH C 24 724 732 HOH HOH . 
L 6 HOH C 25 725 733 HOH HOH . 
L 6 HOH C 26 726 734 HOH HOH . 
L 6 HOH C 27 727 735 HOH HOH . 
L 6 HOH C 28 728 737 HOH HOH . 
L 6 HOH C 29 729 740 HOH HOH . 
L 6 HOH C 30 730 741 HOH HOH . 
L 6 HOH C 31 731 742 HOH HOH . 
L 6 HOH C 32 732 743 HOH HOH . 
L 6 HOH C 33 733 744 HOH HOH . 
L 6 HOH C 34 734 746 HOH HOH . 
M 6 HOH B 1 701 720 HOH HOH . 
M 6 HOH B 2 702 724 HOH HOH . 
M 6 HOH B 3 703 726 HOH HOH . 
M 6 HOH B 4 704 740 HOH HOH . 
N 6 HOH D 1 701 701 HOH HOH . 
N 6 HOH D 2 702 702 HOH HOH . 
N 6 HOH D 3 703 703 HOH HOH . 
N 6 HOH D 4 704 704 HOH HOH . 
N 6 HOH D 5 705 705 HOH HOH . 
N 6 HOH D 6 706 706 HOH HOH . 
N 6 HOH D 7 707 707 HOH HOH . 
N 6 HOH D 8 708 708 HOH HOH . 
N 6 HOH D 9 709 709 HOH HOH . 
N 6 HOH D 10 710 710 HOH HOH . 
N 6 HOH D 11 711 711 HOH HOH . 
N 6 HOH D 12 712 712 HOH HOH . 
N 6 HOH D 13 713 713 HOH HOH . 
N 6 HOH D 14 714 714 HOH HOH . 
N 6 HOH D 15 715 715 HOH HOH . 
N 6 HOH D 16 716 716 HOH HOH . 
N 6 HOH D 17 717 717 HOH HOH . 
N 6 HOH D 18 718 718 HOH HOH . 
N 6 HOH D 19 719 719 HOH HOH . 
N 6 HOH D 20 720 721 HOH HOH . 
N 6 HOH D 21 721 722 HOH HOH . 
N 6 HOH D 22 722 723 HOH HOH . 
N 6 HOH D 23 723 725 HOH HOH . 
N 6 HOH D 24 724 727 HOH HOH . 
N 6 HOH D 25 725 728 HOH HOH . 
N 6 HOH D 26 726 729 HOH HOH . 
N 6 HOH D 27 727 730 HOH HOH . 
N 6 HOH D 28 728 731 HOH HOH . 
N 6 HOH D 29 729 732 HOH HOH . 
N 6 HOH D 30 730 733 HOH HOH . 
N 6 HOH D 31 731 734 HOH HOH . 
N 6 HOH D 32 732 735 HOH HOH . 
N 6 HOH D 33 733 736 HOH HOH . 
N 6 HOH D 34 734 737 HOH HOH . 
N 6 HOH D 35 735 738 HOH HOH . 
N 6 HOH D 36 736 739 HOH HOH . 
N 6 HOH D 37 737 741 HOH HOH . 
N 6 HOH D 38 738 742 HOH HOH . 
N 6 HOH D 39 739 743 HOH HOH . 
N 6 HOH D 40 740 744 HOH HOH . 
N 6 HOH D 41 741 745 HOH HOH . 
N 6 HOH D 42 742 746 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 -12.311 40.39 34.802 1 78.64 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . E 3 -12.19 41.115 33.48 1 85.22 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . E 3 -13.286 42.17 33.382 1 80.32 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . E 3 -14.424 41.99 34.39 1 84.85 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . E 3 -14.65 40.574 34.946 1 81.63 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . E 3 -15.818 39.908 34.238 1 76.32 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . E 3 -10.217 42.06 32.354 1 75.56 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . E 3 -9.468 43.354 32.48 1 61.33 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . E 3 -10.866 41.697 33.451 1 82.53 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . E 3 -13.857 42.152 32.073 1 73.61 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . E 3 -14.248 42.926 35.463 1 82.09 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . E 3 -13.541 39.693 34.823 1 84.46 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . E 3 -15.7 38.491 34.393 1 75.59 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . E 3 -10.226 41.395 31.334 1 65.46 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#