data_7Y0F # _model_server_result.job_id Mf6D8brj-DQuCtkIAOzZBg _model_server_result.datetime_utc '2024-11-06 20:42:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 7Y0F # _exptl.entry_id 7Y0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.44 _cell.angle_gamma 90 _cell.entry_id 7Y0F _cell.length_a 48.045 _cell.length_b 91.208 _cell.length_c 90.696 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 120 1_555 A SG CYS 31 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 25 A CYS 133 1_555 A SG CYS 40 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf3 A SG CYS 64 A CYS 172 1_555 A SG CYS 123 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 77 A CYS 185 1_555 A SG CYS 133 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 136 A CYS 244 1_555 B SG CYS 110 C CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 26 C CYS 281 1_555 B SG CYS 42 C CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 B SG CYS 155 C CYS 410 1_555 B SG CYS 171 C CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 B SG CYS 182 C CYS 437 1_555 B SG CYS 210 C CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 C SG CYS 5 B CYS 113 1_555 C SG CYS 18 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 C SG CYS 12 B CYS 120 1_555 C SG CYS 31 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 C SG CYS 25 B CYS 133 1_555 C SG CYS 40 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 C SG CYS 64 B CYS 172 1_555 C SG CYS 123 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf13 C SG CYS 77 B CYS 185 1_555 C SG CYS 133 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 C SG CYS 136 B CYS 244 1_555 D SG CYS 110 D CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 D SG CYS 26 D CYS 281 1_555 D SG CYS 42 D CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf16 D SG CYS 155 D CYS 410 1_555 D SG CYS 171 D CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 D SG CYS 182 D CYS 437 1_555 D SG CYS 210 D CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 105 A ASN 213 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 C ND2 ASN 105 B ASN 213 1_555 H C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A O ASN 23 A ASN 131 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A OD1 ASP 26 A ASP 134 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc3 A O VAL 28 A VAL 136 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 A OD2 ASP 36 A ASP 144 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A OE2 GLU 37 A GLU 145 1_555 F CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc6 C O ASN 23 B ASN 131 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc7 C OD1 ASP 26 B ASP 134 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc8 C O VAL 28 B VAL 136 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc9 C OD2 ASP 36 B ASP 144 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 C OE2 GLU 37 B GLU 145 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y0F _atom_sites.fract_transf_matrix[1][1] 0.020814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003835 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 601 601 NAG NAG . F 4 CA A 1 602 602 CA CA . G 5 I9V C 1 601 603 I9V I9V . H 3 NAG B 1 601 601 NAG NAG . I 4 CA B 1 602 602 CA CA . J 5 I9V D 1 601 603 I9V I9V . K 6 HOH A 1 701 707 HOH HOH . K 6 HOH A 2 702 711 HOH HOH . K 6 HOH A 3 703 714 HOH HOH . K 6 HOH A 4 704 715 HOH HOH . K 6 HOH A 5 705 716 HOH HOH . K 6 HOH A 6 706 721 HOH HOH . K 6 HOH A 7 707 724 HOH HOH . K 6 HOH A 8 708 731 HOH HOH . K 6 HOH A 9 709 736 HOH HOH . K 6 HOH A 10 710 738 HOH HOH . K 6 HOH A 11 711 739 HOH HOH . K 6 HOH A 12 712 745 HOH HOH . L 6 HOH C 1 701 701 HOH HOH . L 6 HOH C 2 702 702 HOH HOH . L 6 HOH C 3 703 703 HOH HOH . L 6 HOH C 4 704 704 HOH HOH . L 6 HOH C 5 705 705 HOH HOH . L 6 HOH C 6 706 706 HOH HOH . L 6 HOH C 7 707 708 HOH HOH . L 6 HOH C 8 708 709 HOH HOH . L 6 HOH C 9 709 710 HOH HOH . L 6 HOH C 10 710 712 HOH HOH . L 6 HOH C 11 711 713 HOH HOH . L 6 HOH C 12 712 717 HOH HOH . L 6 HOH C 13 713 718 HOH HOH . L 6 HOH C 14 714 719 HOH HOH . L 6 HOH C 15 715 720 HOH HOH . L 6 HOH C 16 716 722 HOH HOH . L 6 HOH C 17 717 723 HOH HOH . L 6 HOH C 18 718 725 HOH HOH . L 6 HOH C 19 719 726 HOH HOH . L 6 HOH C 20 720 727 HOH HOH . L 6 HOH C 21 721 728 HOH HOH . L 6 HOH C 22 722 729 HOH HOH . L 6 HOH C 23 723 730 HOH HOH . L 6 HOH C 24 724 732 HOH HOH . L 6 HOH C 25 725 733 HOH HOH . L 6 HOH C 26 726 734 HOH HOH . L 6 HOH C 27 727 735 HOH HOH . L 6 HOH C 28 728 737 HOH HOH . L 6 HOH C 29 729 740 HOH HOH . L 6 HOH C 30 730 741 HOH HOH . L 6 HOH C 31 731 742 HOH HOH . L 6 HOH C 32 732 743 HOH HOH . L 6 HOH C 33 733 744 HOH HOH . L 6 HOH C 34 734 746 HOH HOH . M 6 HOH B 1 701 720 HOH HOH . M 6 HOH B 2 702 724 HOH HOH . M 6 HOH B 3 703 726 HOH HOH . M 6 HOH B 4 704 740 HOH HOH . N 6 HOH D 1 701 701 HOH HOH . N 6 HOH D 2 702 702 HOH HOH . N 6 HOH D 3 703 703 HOH HOH . N 6 HOH D 4 704 704 HOH HOH . N 6 HOH D 5 705 705 HOH HOH . N 6 HOH D 6 706 706 HOH HOH . N 6 HOH D 7 707 707 HOH HOH . N 6 HOH D 8 708 708 HOH HOH . N 6 HOH D 9 709 709 HOH HOH . N 6 HOH D 10 710 710 HOH HOH . N 6 HOH D 11 711 711 HOH HOH . N 6 HOH D 12 712 712 HOH HOH . N 6 HOH D 13 713 713 HOH HOH . N 6 HOH D 14 714 714 HOH HOH . N 6 HOH D 15 715 715 HOH HOH . N 6 HOH D 16 716 716 HOH HOH . N 6 HOH D 17 717 717 HOH HOH . N 6 HOH D 18 718 718 HOH HOH . N 6 HOH D 19 719 719 HOH HOH . N 6 HOH D 20 720 721 HOH HOH . N 6 HOH D 21 721 722 HOH HOH . N 6 HOH D 22 722 723 HOH HOH . N 6 HOH D 23 723 725 HOH HOH . N 6 HOH D 24 724 727 HOH HOH . N 6 HOH D 25 725 728 HOH HOH . N 6 HOH D 26 726 729 HOH HOH . N 6 HOH D 27 727 730 HOH HOH . N 6 HOH D 28 728 731 HOH HOH . N 6 HOH D 29 729 732 HOH HOH . N 6 HOH D 30 730 733 HOH HOH . N 6 HOH D 31 731 734 HOH HOH . N 6 HOH D 32 732 735 HOH HOH . N 6 HOH D 33 733 736 HOH HOH . N 6 HOH D 34 734 737 HOH HOH . N 6 HOH D 35 735 738 HOH HOH . N 6 HOH D 36 736 739 HOH HOH . N 6 HOH D 37 737 741 HOH HOH . N 6 HOH D 38 738 742 HOH HOH . N 6 HOH D 39 739 743 HOH HOH . N 6 HOH D 40 740 744 HOH HOH . N 6 HOH D 41 741 745 HOH HOH . N 6 HOH D 42 742 746 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.315 _atom_site.Cartn_y 22.697 _atom_site.Cartn_z 23.845 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #