data_7Y0K # _model_server_result.job_id sx1K1TI7bL_FoXSqTB1OFg _model_server_result.datetime_utc '2024-10-10 10:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7Y0K # _exptl.entry_id 7Y0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.44 _cell.angle_beta 84.88 _cell.angle_gamma 68.28 _cell.entry_id 7Y0K _cell.length_a 40.046 _cell.length_b 45.454 _cell.length_c 48.921 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 222 n n PA O2A NDP sing 223 n n PA O5B NDP sing 224 n n PA O3 NDP sing 225 n n O2A HOA2 NDP sing 226 n n O5B C5B NDP sing 227 n n C5B C4B NDP sing 228 n n C5B H51A NDP sing 229 n n C5B H52A NDP sing 230 n n C4B O4B NDP sing 231 n n C4B C3B NDP sing 232 n n C4B H4B NDP sing 233 n n O4B C1B NDP sing 234 n n C3B O3B NDP sing 235 n n C3B C2B NDP sing 236 n n C3B H3B NDP sing 237 n n O3B HO3A NDP sing 238 n n C2B O2B NDP sing 239 n n C2B C1B NDP sing 240 n n C2B H2B NDP sing 241 n n O2B P2B NDP sing 242 n n C1B N9A NDP sing 243 n n C1B H1B NDP sing 244 n n N9A C8A NDP sing 245 n y N9A C4A NDP sing 246 n y C8A N7A NDP doub 247 n y C8A H8A NDP sing 248 n n N7A C5A NDP sing 249 n y C5A C6A NDP sing 250 n y C5A C4A NDP doub 251 n y C6A N6A NDP sing 252 n n C6A N1A NDP doub 253 n y N6A H61A NDP sing 254 n n N6A H62A NDP sing 255 n n N1A C2A NDP sing 256 n y C2A N3A NDP doub 257 n y C2A H2A NDP sing 258 n n N3A C4A NDP sing 259 n y O3 PN NDP sing 260 n n PN O1N NDP doub 261 n n PN O2N NDP sing 262 n n PN O5D NDP sing 263 n n O2N H21N NDP sing 264 n n O5D C5D NDP sing 265 n n C5D C4D NDP sing 266 n n C5D H51N NDP sing 267 n n C5D H52N NDP sing 268 n n C4D O4D NDP sing 269 n n C4D C3D NDP sing 270 n n C4D H4D NDP sing 271 n n O4D C1D NDP sing 272 n n C3D O3D NDP sing 273 n n C3D C2D NDP sing 274 n n C3D H3D NDP sing 275 n n O3D HO3N NDP sing 276 n n C2D O2D NDP sing 277 n n C2D C1D NDP sing 278 n n C2D H2D NDP sing 279 n n O2D HO2N NDP sing 280 n n C1D N1N NDP sing 281 n n C1D H1D NDP sing 282 n n N1N C2N NDP sing 283 n n N1N C6N NDP sing 284 n n C2N C3N NDP doub 285 n n C2N H2N NDP sing 286 n n C3N C7N NDP sing 287 n n C3N C4N NDP sing 288 n n C7N O7N NDP doub 289 n n C7N N7N NDP sing 290 n n N7N H71N NDP sing 291 n n N7N H72N NDP sing 292 n n C4N C5N NDP sing 293 n n C4N H41N NDP sing 294 n n C4N H42N NDP sing 295 n n C5N C6N NDP doub 296 n n C5N H5N NDP sing 297 n n C6N H6N NDP sing 298 n n P2B O1X NDP doub 299 n n P2B O2X NDP sing 300 n n P2B O3X NDP sing 301 n n O2X HOP2 NDP sing 302 n n O3X HOP3 NDP sing 303 n n # _atom_sites.entry_id 7Y0K _atom_sites.fract_transf_matrix[1][1] 0.024971 _atom_sites.fract_transf_matrix[1][2] -0.009946 _atom_sites.fract_transf_matrix[1][3] 0.001654 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023681 _atom_sites.fract_transf_matrix[2][3] -0.009698 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NDP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id NDP _pdbx_nonpoly_scheme.auth_mon_id NDP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 -6.96 -21.453 -13.307 1 56.64 ? PA NDP 401 A 1 HETATM 2 O O1A NDP . . . B 2 -8.182 -22.271 -13.051 1 69.97 ? O1A NDP 401 A 1 HETATM 3 O O2A NDP . . . B 2 -7.126 -19.991 -13.558 1 49.88 ? O2A NDP 401 A 1 HETATM 4 O O5B NDP . . . B 2 -6.123 -22.108 -14.508 1 65.86 ? O5B NDP 401 A 1 HETATM 5 C C5B NDP . . . B 2 -6.709 -23.212 -15.243 1 58.76 ? C5B NDP 401 A 1 HETATM 6 C C4B NDP . . . B 2 -6.14 -23.241 -16.64 1 70.03 ? C4B NDP 401 A 1 HETATM 7 O O4B NDP . . . B 2 -6.177 -24.603 -17.141 1 80.22 ? O4B NDP 401 A 1 HETATM 8 C C3B NDP . . . B 2 -6.879 -22.395 -17.686 1 71.34 ? C3B NDP 401 A 1 HETATM 9 O O3B NDP . . . B 2 -5.973 -21.827 -18.624 1 69.26 ? O3B NDP 401 A 1 HETATM 10 C C2B NDP . . . B 2 -7.816 -23.411 -18.326 1 73.71 ? C2B NDP 401 A 1 HETATM 11 O O2B NDP . . . B 2 -8.139 -23.029 -19.66 1 70.8 ? O2B NDP 401 A 1 HETATM 12 C C1B NDP . . . B 2 -6.945 -24.661 -18.32 1 80.43 ? C1B NDP 401 A 1 HETATM 13 N N9A NDP . . . B 2 -7.706 -25.905 -18.317 1 77.48 ? N9A NDP 401 A 1 HETATM 14 C C8A NDP . . . B 2 -8.301 -26.499 -17.233 1 73.07 ? C8A NDP 401 A 1 HETATM 15 N N7A NDP . . . B 2 -8.919 -27.615 -17.527 1 70.57 ? N7A NDP 401 A 1 HETATM 16 C C5A NDP . . . B 2 -8.721 -27.769 -18.891 1 76.37 ? C5A NDP 401 A 1 HETATM 17 C C6A NDP . . . B 2 -9.132 -28.762 -19.801 1 75.76 ? C6A NDP 401 A 1 HETATM 18 N N6A NDP . . . B 2 -9.854 -29.826 -19.458 1 74.31 ? N6A NDP 401 A 1 HETATM 19 N N1A NDP . . . B 2 -8.764 -28.614 -21.095 1 73.97 ? N1A NDP 401 A 1 HETATM 20 C C2A NDP . . . B 2 -8.037 -27.542 -21.434 1 75.7 ? C2A NDP 401 A 1 HETATM 21 N N3A NDP . . . B 2 -7.595 -26.548 -20.668 1 76.26 ? N3A NDP 401 A 1 HETATM 22 C C4A NDP . . . B 2 -7.974 -26.72 -19.391 1 78.77 ? C4A NDP 401 A 1 HETATM 23 O O3 NDP . . . B 2 -5.942 -21.652 -12.083 1 68.16 ? O3 NDP 401 A 1 HETATM 24 P PN NDP . . . B 2 -4.405 -21.242 -11.876 1 64.97 ? PN NDP 401 A 1 HETATM 25 O O1N NDP . . . B 2 -4.226 -20.744 -10.48 1 52.03 ? O1N NDP 401 A 1 HETATM 26 O O2N NDP . . . B 2 -3.991 -20.354 -13.003 1 51.98 ? O2N NDP 401 A 1 HETATM 27 O O5D NDP . . . B 2 -3.685 -22.667 -12.029 1 67.89 ? O5D NDP 401 A 1 HETATM 28 C C5D NDP . . . B 2 -2.38 -22.718 -12.659 1 63.77 ? C5D NDP 401 A 1 HETATM 29 C C4D NDP . . . B 2 -1.735 -24.051 -12.369 1 63.43 ? C4D NDP 401 A 1 HETATM 30 O O4D NDP . . . B 2 -0.918 -23.934 -11.176 1 71 ? O4D NDP 401 A 1 HETATM 31 C C3D NDP . . . B 2 -2.696 -25.226 -12.13 1 64.22 ? C3D NDP 401 A 1 HETATM 32 O O3D NDP . . . B 2 -2.272 -26.389 -12.831 1 64.91 ? O3D NDP 401 A 1 HETATM 33 C C2D NDP . . . B 2 -2.636 -25.406 -10.614 1 63.92 ? C2D NDP 401 A 1 HETATM 34 O O2D NDP . . . B 2 -2.869 -26.749 -10.215 1 69.72 ? O2D NDP 401 A 1 HETATM 35 C C1D NDP . . . B 2 -1.218 -24.967 -10.269 1 64.62 ? C1D NDP 401 A 1 HETATM 36 N N1N NDP . . . B 2 -1.12 -24.419 -8.885 1 64.11 ? N1N NDP 401 A 1 HETATM 37 C C2N NDP . . . B 2 -1.649 -23.197 -8.575 1 47.34 ? C2N NDP 401 A 1 HETATM 38 C C3N NDP . . . B 2 -2.043 -22.898 -7.302 1 39.75 ? C3N NDP 401 A 1 HETATM 39 C C7N NDP . . . B 2 -2.716 -21.6 -7.075 1 38.82 ? C7N NDP 401 A 1 HETATM 40 O O7N NDP . . . B 2 -3.081 -20.919 -8.039 1 47.43 ? O7N NDP 401 A 1 HETATM 41 N N7N NDP . . . B 2 -2.906 -21.207 -5.824 1 31.79 ? N7N NDP 401 A 1 HETATM 42 C C4N NDP . . . B 2 -1.77 -23.898 -6.23 1 52.68 ? C4N NDP 401 A 1 HETATM 43 C C5N NDP . . . B 2 -0.845 -24.976 -6.632 1 56.28 ? C5N NDP 401 A 1 HETATM 44 C C6N NDP . . . B 2 -0.494 -25.13 -7.89 1 61.04 ? C6N NDP 401 A 1 HETATM 45 P P2B NDP . . . B 2 -9.507 -22.172 -19.662 1 61.25 ? P2B NDP 401 A 1 HETATM 46 O O1X NDP . . . B 2 -10.646 -23.173 -19.607 1 71.66 ? O1X NDP 401 A 1 HETATM 47 O O2X NDP . . . B 2 -9.513 -21.369 -20.949 1 74.59 ? O2X NDP 401 A 1 HETATM 48 O O3X NDP . . . B 2 -9.466 -21.284 -18.433 1 72.54 ? O3X NDP 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #